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101.
102.
103.
Pablo A. Molina R. Steven Sikorski Jan H. Jensen 《Theoretical chemistry accounts》2003,109(3):100-107
The relationship between hydrogen bonding and NMR chemical shifts in the catalytic triad of low-pH α-chymotrypsin is investigated
by combined use of the effective fragment potential [(2001) J Phys Chem A 105:293] and ONIOM–NMR [(2000) Chem Phys Lett 317:589] methods. Our study shows that while the His57 Nδ1−H bond is stretched by a relatively modest amount (to about 1.060 ?) this lengthening, combined with the polarization due
to the molecular environment, is sufficient to explain the experimentally observed chemical shifts of 18.2 ppm. Furthermore,
the unusual down-field shift of Hɛ1 (9.2 ppm) observed experimentally is reproduced and shown to be induced by interactions with the C=O group of Ser214 as previously
postulated. The free-energy cost of moving Hδ1 from His57 to Asp102 is predicted to be 5.5 kcal/mol.
Received: 26 September 2001 / Accepted: 6 September 2002 / Published online: 21 January 2003
Contribution to the Proceedings of the Symposium on Combined QM/MM Methods at the 222nd National Meeting of the American
Chemical Society, 2001
Correspondence to: J. H. Jensen e-mail: jan-jensen@uiowa.edu
Acknowledgements. This work was supported by a Research Innovation Award from the Research Corporation and a type G starter grant from the
Petroleum Research Fund. The calculations were performed on IBM RS/6000 workstations obtained through a CRIF grant from the
NSF (CHE-9974502) and on supercomputers at the National Center for Supercomputer Applications at Urbana-Champaign. The authors
are indebted to Visvaldas Kairys for help with the CHARMM program, and to Daniel Quinn for many helpful discussions. 相似文献
104.
Branko Stanovnik Uroš Urleb Miha Tišler 《Monatshefte für Chemie / Chemical Monthly》1987,118(5):601-606
An unequivocal synthesis of 5-chloro-7-methyl- (8) and 7-methyl-1,2,4-triazolo[1,5-a]pyrimidine (10) from 2-amino-4-chloro-6-methylpyrimidine (5) through the corresponding amidine6 and formamide oxime7 was developed. It was unambigously shown by comparison of the chemical shifts and the magnitude of coupling constants that the compounds obtained by condensation of 3-amino-1,2,4-triazole (12) and ethyl acetoacetate (13) and some further transformations are isomeric 5-methyl substituted 1,2,4-triazolo[1,5-a]pyrimidines1,9, and11.
Eine eindeutige Synthese einiger substituierter 1,2,4-Triazolo[1,5-a]pyrimidine
Zusammenfassung Es wurde ein eindeutiger Syntheseweg für 5-Chlor-7-methyl- (8) und 7-Methyl-1,2,4-triazolo[1,5-a]pyrimidin (10) ausgehend von 2-Amino-4-chlor-6-methylpyrimidin (5) über das entsprechende Amidin6 und das Formamidoxim7 entwickelt. Durch Vergleich von chemischen Verschiebungen und Kopplungskonstanten konnte eindeutig gezeigt werden, daß die Verbindungen, die bei der Kondensation von 3-Amino-1,2,4-triazol (12) and Ethylacetoacetat (13), sowie einige weitere Transformationsprodukte, isomere 5-Methylsubstituierte 1,2,4-Triazolo[1,5-a]pyrimidine sind (1,9,11).相似文献
105.
Proton relaxation time measurements are performed for 6m aqueous solutions of7LiI and6LiI in D2O containing small amounts of H2O. The measurements are done at low temperatures and yield maxima of the relaxation rate plotted against 1/T. From the maxima of the relaxation rates, proteon-I– and proton-Li+ distances in the first coordination sphere of the ions are determined, and from the knowledge of the ion-water oxygen distance it is shown that for iodide a somewhat broadened H-bonded configuration is valid and that for Li+ the electric dipole orientation deviates from the radial direction. In order to test the reliability of the method a proton-127I interaction study is also performed in KI solution in glycerol. The I-H distance obtained is in satisfactory agreement with that found in the aqueous system. 相似文献
106.
Matthias Bauer Christoph Gastl Christoph Köppl Guido Kickelbick Helmut Bertagnolli 《Monatshefte für Chemie / Chemical Monthly》2006,137(5):567-581
Summary. The molecular structure of the transition metal alkoxide Zr(OnBu)4 in toluene and its modification by addition of i-propanol, tetrahydrofurane, and the coordinating ligand pentane-1,3-dione (Hacac) were investigated by extended X-ray absorption fine structure (EXAFS) and X-ray absorption near edge structure (XANES) spectroscopy.
Zr(OnBu)4 dissolved in toluene forms dimers. It was proved that cluster size is a function of the number of added equivalents ligand.
In contrast, the addition of i-propanol or tetrahydrofurane caused no structural changes observable by EXAFS spectroscopy. A detailed discussion of the
structural models is given in terms of possible alternatives and errors within the EXAFS analysis. 相似文献
107.
Preparation, 11B NMR, Vibrational Spectra, and Crystal Structure of [(C5H5N)2CH2][1-(O2N)B10H9] By reaction of [B10H10]2? in aqueous acetonitrile with a saturated solution of NO2 in dichloromethane [1-(O2N) · B10H9]2? and [B10H9(NO)B10H9]3? are formed which can be separated by ion exchange chromatography on diethylaminoethyl(DEAE) cellulose from the starting compound. The X-ray structure determination of [(C5H5N)2CH2][1-(O2N)B10H9] (triclinic, space group P1 , a = 7.1530(9), b = 8.3753(8), c = 15.198(2) Å, α = 96.00(1), β = 95.48(1), γ = 95.60(1)°, Z = 2) reveals the coordination of the NO2 group via N with a B1? N distance of 1.535(5) Å and an O2? N? O1 angle of 119.3(3)°. The 11B NMR spectrum exhibits the characteristic feature (1 : 1 : 4 : 4) of an apical monosubstituted B10 cluster with a strong downfield shift of the ipso-B atom at +13.4 ppm. The IR and Raman spectra show strong NO stretching vibrations at 1381 und 1420 cm?1. 相似文献
108.
Phosphoraneiminato Complexes of Iodine. Syntheses and Crystal Structures of Ph3PNIO2 and Ph3PNSiMe3 · I2 Ph3PNIO2 has been prepared as yellow crystals by the reaction of Ph3PNSiMe3 with I2O5 in boiling acetonitrile, whereas the molecular complex Ph3PNSiMe3 · I2 is formed as brown crystals by the reaction of Ph3PNSiMe3 with iodine in acetonitrile solution. Both complexes were characterized by crystal structure determinations. Ph3PNIO2: Space group P21/n, Z = 4, 2 858 observed unique reflections, R = 0.039. Lattice dimensions at 19°C: a = 972.8(2), b = 1 743.4(3), c = 1 073.7(2) pm, β = 115.46(3)°. The compound forms monomeric molecules with pyramidal geometry at the iodine atom. The bond angle PNI (126.9°) is unusually small; the PN bond length of 159.2 pm corresponds with a double bond. Ph3PNSiMe3 · I2: Space group P1 , Z = 2, 3 560 observed unique reflections, R = 0.033. Lattice dimensions at 19°C: a = 941.2(2), b = 1 041.7(2), c = 1 287.4(3) pm, α = 78.34(1)°, β = 72.00(2)°, γ = 86.08(2)°. The compound forms monomeric molecules, in which the I2 molecule and the nitrogen atom of the phosphoraneimine molecule realize a linear N? I? I axis with a bond length N? I of 243.2 pm. 相似文献
109.
Cs3[Tb10(C2)2]Cl21, A New Formula and Structure Type with Isolated Dimeric Clusters Cs3[Tb10(C2)2]Cl21 is obtained via the metallothermic reduction of TbCl3 with caesium in the presence of graphite as black single crystals. The crystal structure (monoclinic, C2/c, Z = 4; a = 2318.72(13); b = 1245.8(9); c = 1502.0(13) pm; β = 98.13(6)°; R = 0.089; Rw = 0.049) contains dimeric clusters that are built from two octahedra connected via one common edge and filled with C2 units. These isolated [Tb10(C2)2] clusters are surrounded by 26 chloride ligands which are then connected via i—a and a—a bridges in a way that voids for Cs+ of coordination number 10 are formed. 相似文献
110.
Sc2Ni2In was prepared by a reaction of the elemental components in an are furnace and subsequent annealing at 1070 K. Sc2Ni2In is a Pauli paramagnet and a poor metallic conductor with a specific resistivity of 224 mΩcm at room temperature. Its crystal structure was refined from X-ray powder data: P4/mbm, a = 716.79(1) pm, c = 333.154(8) pm, Z = 2, Rwp = 0.040, and RB(I) = 0.026. Sc2Ni2In crystallizes with a ternary ordered version of the U3Si2-type structure. The nickel and indium atoms occupy [NiSc6] trigonal prisms and [InSc8] square prisms, respectively. These structural fragments are derived from the AlB2 and CsCl-type structures. Semi-empirical band structure calculations reveal Sc2Ni2In to be a nickelide, and the strongest bonding interactions are found for the Sc? Ni contacts, followed by Sc? In and Ni? In. A rigidband model suggests the existence of the isotypic phase Sc2Ni2Sb. 相似文献