Network analysis based on low-rank method for mining information on integrated data of multi-cancers

The noise problem of cancer sequencing data has been a problem that can’t be ignored. Utilizing considerable way to reduce noise of these cancer data is an important issue in the analysis of gene co-expression network. In this paper, we apply a sparse and low-rank method which is Robust Principal Component Analysis (RPCA) to solve the noise problem for integrated data of multi-cancers from The Cancer Genome Atlas (TCGA). And then we build the gene co-expression network based on the integrated data after noise reduction. Finally, we perform nodes and pathways mining on the denoising networks. Experiments in this paper show that after denoising by RPCA, the gene expression data tend to be orderly and neat than before, and the constructed networks contain more pathway enrichment information than unprocessed data. Moreover, learning from the betweenness centrality of the nodes in the network, we find some abnormally expressed genes and pathways proven that are associated with many cancers from the denoised network. The experimental results indicate that our method is reasonable and effective, and we also find some candidate suspicious genes that may be linked to multi-cancers.     

The influence of turbulence on noise propagation from a point source above a flat ground surface

The presence of turbulence in the atmosphere affects the interaction between an acoustic wave and the ground surface. The noise attenuation by the ground in the presence of atmospheric turbulence is smaller than in non-turbulent atmosphere.A simple engineering model of noise propagation above a flat ground surface, for stationary and moving point sources, has been proposed. The model takes into account the air absorption and ground effect in the presence of turbulence.As well as parameters for type of ground and air absorption, the model introduces two adjustable parameters which must be deduced from in situ measurements at two ranges or two heights. The model’s free parameters have been obtained as a function of the resultant sound speed gradient on the basis of the field measurements performed for a stationary noise source. Also, using field data for a vehicle moving at steady speeds up to 100 km/h, the model has been verified for a moving point source.     

Low frequency in situ metrology of absorption and dispersion of sound absorbing porous materials based on high power ultrasonic non-linearly demodulated waves

The present work is related to acoustic in situ free-field measurements of sound absorption in porous materials, such as cellular plastic foams, glass-wool or recycled felt materials. The emphasis is given towards fine metrology of absorption in view of potential industrial applications. A powerful ultrasonic array working at 40 kHz is used. It enables to measure absorption acoustical data down to 100 Hz due to the exploitation of the non-linear ultrasonic demodulation phenomenon in air. Fine measurements of acoustic absorption are compared to numerical predictions based on the “equivalent-fluid” model (when the squeleton frame is motionless), and to some measurements performed on a Brüel and Kjaer impedance tube. Dispersion curves are also measured and compared to the numerical predictions for some automotive felt materials which are compressed at various ratios. Data obtained with a dedicated portable instrument are also discussed for the same type of materials and configurations.     

Development of a highway traffic noise prediction model that considers various road surface types

A highway traffic noise prediction model has been developed for environmental assessment in South Korea. The model is based on an outdoor sound propagation method and is fully compliant with ISO 9613 and the sound power level (PWL) estimation for a road segment, as suggested in the ASJ Model-1998 that is based on PWLs. Due to that model’s selection of two pavement types, such as asphalt or concrete pavement, an unacceptable traffic noise prediction is made in cases where the road surface is different from that on which the model is based. In order to address this problem, several road surface types are categorized, and the PWL of each surface type is determined and modeled by measuring the noise levels obtained from newly developed methods. An evaluation of the traffic noise prediction model using field measurements finds good agreement between predicted and measured noise levels.     

Effect of the Noise Correlation Time on the Stationary Current of Brownian Particle in a Spatially Symmetric Periodic Potential

We investigate the noise-induced transport of Brownian particle in a deterministic spatial symmetrical periodic potential driven by colored cross correlation between a multiplicative white noise and an additive white noise. We derive the general formula of the stationary current. Based on numerical computation, we found that directed motion of the Brownian particles can be induced by the correlation time τ of cross correlation between the multiplicative noise and the additive noise and the current reversal and the direction of the current is controlled by the τ.     

A Geometric Analysis of the Effects of Noise on Berry Phase

In this work we describe the effect of classical and quantum noise on the Berry phase. It is not a topical review article but rather an overview of our work in this field aiming at giving a simple pictorial intuition of our results.     

Performance of T-shape barriers with top surface covered with absorptive quadratic residue diffusers

A previous paper [Applied Acoustics 66 (2005) 709-730] has shown that adding a quadratic residue diffuser (QRD) to the top of a T-shape barrier can provide better barrier performance than an equivalent purely absorptive barrier. In here, we extend the study to look at the performance when a QRD is made absorptive. This paper presents an investigation on the acoustic performance of a few welled-diffusers with different absorption ability on top of a T-shape noise barrier. The absorption properties of the diffusers are modified with different sequences, by filling the wells with fiberglass, by covering the well entrance with wire meshes, and by putting perforated sheet either on the top surface or inside the wells. A 2D Boundary Element Method (BEM) is used to calculate the barrier insertion loss. The numerical and experimental results on diffuser barriers with rigid and absorptive covers are compared. Among the tested models the best method of treating diffuser barriers with absorbent agents in the QRD is found to be a perorated sheet on top or inside the diffuser wells. It is found that increasing the absorption ability of QRD by fiberglass or high resistance wire meshes has negative effect on the efficiency of a QRD barrier. It is shown that, if the increase in absorption destroys the effect of resonance in wells, it will also have negative effect on the insertion loss performance of the QRD edge barrier.     

Noise induced intercellular propagation of calcium waves

In this paper, we investigate the spatiotemporal dynamics of a bidirectional coupled chain of cells, in which a cell is subjected to an external noise. Noisy oscillations of calcium (Ca²⁺), that is, a bursting-like phenomenon induced by noise with fluctuations in the baseline values of calcium, are induced in the first cell and propagated along the chain with noise suppression. This phenomenon of noise suppression is further investigated by computing the normalized fluctuation of pulse durations. It is therefore found that the noise induced coherence resonance phenomenon occurs at the cellular level. Coherence biresonance behaviour appears in the transmission of noise induced oscillations at appropriate noise intensity or noise coupling (for low noise intensity) and the information flow in each cell can be simultaneously optimized at the optimal value of noise or coupling.     

On some properties of nearly conservative dynamics of Ikeda map and its relation with the conservative case

The behavior of the well-known Ikeda map with very weak dissipation (so-called nearly conservative case) is investigated. The changes in the bifurcation structure of the parameter plane while decreasing the dissipation are revealed. It is shown that when the dissipation is very weak the system demonstrates an “intermediate” type of dynamics combining the peculiarities of conservative and dissipative dynamics. The correspondence between the trajectories in the phase space in the conservative case and the transformations of the set of initial conditions in the nearly conservative case has been obtained. The dramatic increase of the number of coexisting low-period attractors and the extraordinary growth of the transient time while the dissipation decreases have been revealed. The method of plotting a bifurcation tree for the set of initial conditions has been used to classify the existing attractors by their structure. Also it was shown that most of the coexisting attractors are destroyed by rather small external noise, and the transient time in noisy driven systems increases still more. The new method of two-parameter analysis for conservative systems was proposed.