Competition between Hydrophilic and Argyrophilic Interactions in Surface Enhanced Raman Spectroscopy

The competition for binding and charge‐transfer (CT) from the nitrogen containing heterocycle pyrimidine to either silver or to water in surface enhanced Raman spectroscopy (SERS) is discussed. The correlation between the shifting observed for vibrational normal modes and CT is analyzed both experimentally using Raman spectroscopy and theoretically using electronic structure theory. Discrete features in the Raman spectrum correspond to the binding of either water or silver to each of pyrimidine's nitrogen atoms with comparable frequency shifts. Natural bond orbital (NBO) calculations in each chemical environment reveal that the magnitude of charge transfer from pyrimidine to adjacent silver atoms is only about twice that for water alone. These results suggest that the choice of solvent plays a role in determining the vibrational frequencies of nitrogen containing molecules in SERS experiments.     

Binding energies and electronic structures of Cu(OH2)n and Cu(NH3)n (n=1–4): anomaly of the two ligand Cu complexes

Ab initio calculations up to MP4(SDTQ) level and density functional theory have been used to estimate binding energies and electronic structures of Cu⁺(L)_n (L=OH₂, NH₃, n=1–4) complexes using TZP basis set types. The computed binding energies agree well with experimental values. General trends in structures and energetics are recorded for both Cu⁺(OH₂)_n and Cu⁺(NH₃)_n systems. The first two ligands are more strongly bound to Cu⁺ than the third and fourth molecules. The 4s–3dσ hybridization and electrostatic interactions are the main factors behind the higher binding energies for the first two ligands. Analysis of HOMO mixed orbitals in the copper ion as well as in complexes indicates shrinking of the orbital lobes directed to the ligand with shrinking more effective in the two ligand system. The lower binding energies for the third and fourth ligands were attributed to the attenuation of sdσ hybridization and decreasing of Cu–L attraction at long separation which is necessary to relieve Cu–L and L–L exchange repulsions. NBO analysis and charge-model calculations support the presence of sdσ hybridization and electron transfer to the copper ion in case of the first two ligands.     

Theoretical investigation to characterize the inclusion complex of α-lipoic acid and β-cyclodextrin

We simulated the docking of α-lipoic acid (α-LA) in β-cyclodextrin (β-CD) using two models. We considered in this study complexes formed by 1:1 host–guest stoichiometry in vacuo and in aqueous phase, using PM6, DFT and ONIOM2 hybrid calculations. The results obtained with PM6 method clearly indicate that the complexes formed are energetically favored with or without solvent, model 2 (α-LA entering the cavity of β-CD from its wide side by COOH group) is found more favored than model 1 (α-LA entering into the cavity of β-CD from its wide side by cyclic group), the preference being greater in the case of ONIOM2 calculations. In addition, NBO analysis gives that mutual interactions between the donor and acceptor orbitals of α-lipoic acid and β-CD plays an important role to the stabilization of such a complex. Finally, ¹H nuclear magnetic resonance (NMR) chemical shifts of free and complexed α-LA were calculated by the Gauge-Including Atomic Orbital (GIAO) method and compared with available experimental data. The results of GIAO calculations were analyzed and discussed.     

2，7′-(乙烯基)-二-8-羟基喹啉及其金属有机配合物的密度泛函和自然键轨道理论计算

采用密度泛函理论(DFT),在B3LYP/6-31G水平上对2,7′-(乙烯基)-二-8-羟基喹啉(2,7′-Ethq₂)及其3种金属M(M=Zn,Mg,Be)有机配合物M(2,7′-Ethq₂)₂的结构进行了全优化,并用ZINDO和TDDFT方法计算了它们的吸收光谱。同时,利用自然键轨道理论(NBO)对分子内氢键进行了分析。结果表明,光谱计算值与实验值基本符合,该类化合物均具有较大的电子亲和能,改变中心金属原子对配合物吸收光谱性质影响不大。和2,7′-Ethq₂相比,M(2,7′-Ethq₂)₂的吸收光谱产生明显红移。2,7′-Ethq₂及其M(2,7′-Ethq₂)₂分子内存在较强的氢键,氢键与环上的碳原子形成五元环,分子内氢键的存在使分子的稳定性增加。     

(CH3)2S与HOCl分子间的卤键和氢键相互作用

在DFT-B3LYP/6-311++G**水平上分别求得(CH3)2S…ClOH卤键复合物和(CH3)2S…HOCl氢键复合物势能面上的稳定构型. 频率分析表明, 与单体HOCl相比, 在两种复合物中, 10Cl—11O和12H—11O键伸缩振动频率发生显著的红移. 经MP2/6-311++G**水平计算的含基组重叠误差(BSSE)校正的气相中相互作用能分别为-11.69和-24.16 kJ·mol-1. 自然键轨道理论(NBO)分析表明, 在(CH3)2S…ClOH卤键复合物中, 引起10Cl—11O键变长的因素包括两种电荷转移: (i) 孤对电子LP(1S)1→σ*(10Cl—11O); (ii) 孤对电子LP(1S)2→σ*(10Cl—11O), 其中孤对电子LP(1S)2→σ*(10Cl—11O)转移占主要作用, 总的结果是使σ*(10Cl—11O)的自然布居数增加0.14035e, 同时11O原子的再杂化使其与10Cl成键时s成分增加, 即具有与电荷转移作用同样的“拉长效应”; 在(CH3)2S…HOCl氢键复合物中也存在类似的电荷转移, 但是11O原子的再杂化不同于前者. 自然键共振理论(NRT)进行键序分析表明, 在卤键复合物和氢键复合物中, 10Cl—11O和12H—11O键的键序都减小. 通过分子中原子理论(AIM)分析了复合物中卤键和氢键的电子密度拓扑性质.     

UV filter 2‐ethylhexyl 4‐methoxycinnamate: a structure,energetic and UV–vis spectral analysis based on density functional theory

2‐Ethylhexyl 4‐methoxycinnamate (EHMC) is a very commonly used UVB filter that is known to isomerize from the (E) to the (Z) isomer in the presence of light. In this study, we have performed high level quantum chemical calculations using density functional theory (DFT) with the B3LYP density functional and extended basis sets to study the gas‐phase molecular structure of EHMC and its energetic stability. Calculations were also performed for related smaller molecules cinnamic acid and 4‐methoxycinnamic acid. Charge delocalization has been analyzed using natural charges and Wiberg bond indexes within the natural bond orbital analysis and using nucleus independent chemical shifts. Density functional theory calculations reveal that the (E) isomer of EHMC is more stable than the (Z) by about 20 kJ mol^?1 in both the gas and aqueous phases. The enthalpy of formation in the gas phase of (E)‐EHMC was derived from an isodesmic bond separation reaction. Long‐range corrected DFT calculations in implicit water were made in order to understand the excited state properties of the (E) and (Z) isomers of EHMC. Copyright © 2013 John Wiley & Sons, Ltd.     

CX2(X=F, Cl, Br)与CH3CHO中C－C键插入和环加成的理论模拟

采用密度泛函[DFT]和自然键轨道理论[NBO]及高级电子耦合簇[CCSD(T)]和电子密度拓扑分析[AIM]方法, 研究了单重态二卤卡宾CX2(X=F, Cl, Br)与乙醛CH3CHO 中C—C键的插入反应及其环加成的反应机理. 在B3LYP/6-31G(d)水平上优化了各驻点构型, 用频率分析和内禀反应坐标法(IRC)对过渡态进行了验证, 计算了各物种的CCSD(T)/6-31G(d, p)单点能量. 用经Wigner校正的Eyring过渡态理论分别计算了1大气压下主反应通道的热力学与动力学性质, 并对反应通道中构型进行了自然键轨道及电子密度拓扑分析. 结果表明, CF2与CH3CHO反应的主产物是P2F[CH3CF2CHO: 插入CH3CHO中C-C键, 反应I(2)], 而CCl2及CBr2与CH3CHO反应的主产物是P1Cl[Cl2COCHCH3: 成环反应II(1)]及P1Br[Br2COCHCH3: 成环反应III(1)], 1大气压下, 反应I(2)和II(1)及III(1)进行的适宜温度范围分别为400~1300K和400~1000K.     

Crystal structure and DFT analyses of a pentacoordinated PCP pincer nickel(II) complex

The reaction of NiCl₂ with 1,3‐bis[(diphenylphosphanyl)methyl]hexahydropyrimidine in the presence of 2,6‐dimethylphenyl isocyanide and KPF₆ afforded a new pentacoordinated PCP pincer Ni^II complex, namely {1,3‐bis[(diphenylphosphanyl)methyl]hexahydropyrimidin‐2‐yl‐κN²}(2,6‐dimethylphenyl isocyanide‐κC)nickel(II) hexafluoridophosphate 0.70‐hydrate, [Ni(C₉H₉N)(C₃₀H₃₀ClN₂P₂)]PF₆·0.7H₂O or [NiCl{C(NCH₂PPh₂)₂(CH₂)₃‐κ³P,C,P′}(Xylyl‐NC)]PF₆·0.7H₂O, in very good yield. Its X‐ray structure showed a distorted square‐pyramidal geometry and the compound does not undergo dissociation in solution, as shown by variable‐temperature NMR and UV–Vis studies. Density functional theory (DFT) calculations provided an insight into the bonding; the nickel dsp²‐hybridized orbitals form the basal plane and the nearly pure p orbital forms the axial bond. This is consistent with the NBO (natural bond orbital) analysis of analogous nickel(II) complexes.