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81.
ISMO-CDCI方法点群理论,特别是不可约张量方法,在量子化学理论方法发展以及简化概念与计算方面,发挥了重要作用.但在国外的量子化学计算程序(如G94)中,在后自洽场(opt-SCF)计算方面,很少用到对称约化.在文献中,只见有关hbeltah群(DZh与它的子群)对称约化用于组态相关计算的报导.由于多重耦合系数的计算复杂,蜕化不可约表示多体问题的对称约化难于得到解决.我们提出了一个统一与普遍的方法,它能解决所有分子体系多体相关的点群对称约化问题[‘-6],这个方法的核心是群对称轨道(SMO)概念的提出.SMO的基本特… 相似文献
82.
Summary The calculation of vibrational states using a gradient extremal path is discussed. Gradient extremal paths are defined by local criteria, which lead to stable solutions. This has certain advantages in comparison with a steepest-descent path, which is often difficult to determine accurately. For cases where a reaction path formalism is applicable, a path based on the gradient extremal concept gives results in close agreement with those obtained using traditional steepest-descent methods. We present algorithms for carrying out such calculations and also give some numerical results. 相似文献
83.
Andrew R. Leach Keith Prout Daniel P. Dolata 《Journal of computer-aided molecular design》1988,2(2):107-123
Summary The results of a wide-ranging investigation into some of the different methods available for performing the joining of templates to build molecular models show that the choice of algorithm can significantly affect the quality of the results obtained, and different algorithms are most suited to particular categories of join. 相似文献
84.
Summary A set of algorithms designed to enhance the display of protein binding cavities is presented. These algorithms, collectively entitled CAVITY SEARCH, allow the user to isolate and fully define the extent of a particular cavity. Solid modeling techniques are employed to produce a detailed cast of the active site region, which can then be color-coded to show electrostatic and steric interactions between the protein cavity and a bound ligand. 相似文献
85.
Structures and energetics of reactants, transition states and cycloadducts of cycloadditions of nitrone with three-fluorinated dipolarophiles have been investigated with the density functional theory method B3LYP/6-31G*. Analysis of the results on the different reaction pathways shows that the reaction takes place along a concerted mechanism and proceeds more or less synchronously. The FMO analysis shows a strong HOMOdipole-LUMOdipolarophile interaction as the principal reason for the reactivity in these 1,3-dipolar cycloaddition reactions. Regioselectivity of the products of the reaction is predicted reliably by our calculations, the results provide a good prediction of the relatives rates observed experimentally as the dipolarophiles are varied. 相似文献
86.
Juan Manuel Benito David Rodríguez-Lucena José Luis Jiménez Blanco Carmen Ortiz Mellet José Manuel García Fernández 《Journal of inclusion phenomena and macrocyclic chemistry》2007,57(1-4):147-150
A new concept for the de novo synthesis of artificial glyconanocavities is presented. The use of alternating α,α′-trehalose building blocks and (thio)urea segments allows the efficient synthesis of a new family of cyclooligosaccharides,
namely cyclotrehalans (CTs), featuring a convex-shaped cavity with an apolar environment. CTs are designed to exhibit molecular inclusion abilities
similar to that of cyclodextrins (CDs). Contrary to CDs, CTs expose the monosaccharide β-face to the inner cavity, while the (thio)urea tethers provides some conformational adaptability. High-yielding syntheses
of a series of CTs and a preliminary evaluation of their inclusion properties are reported. 相似文献
87.
Summary. A formalism has been developed that describes spin crossover equilibrium in the solid state by taking into account the effects
of n nearest neighbours of a given molecule on its partition function. In this way binary and many-body interactions of the order
n + 1 are included into the theoretical model and represented by non-ideality parameters connected with the splitting of free
energy levels. Binary interactions are characterised by the main splittings whereas higher order interactions manifest themselves
in asymmetries of splittings within multiplets. The contribution of molecular interactions can also be written in terms of
formal excess free energies of the second, third, fourth and higher orders. Simple relationships between excess free energies
and parameters of multiplets have been found for binary, ternary and quaternary interactions. This formalism is reduced to
that of the model of binary interactions when effects of surroundings are additive leading to equidistant free energy multiplets.
Higher order interactions may cause an abrupt spin crossover but in a limited range of compositions around the transition
point. The regression of experimental transition curves of one-step spin crossover may yield estimates of excess energies
up to the fifth order. 相似文献
88.
Milton Medeiros 《Theoretical chemistry accounts》2005,113(3):178-182
An early rejection scheme for trial moves in adiabatic nuclear and electronic sampling Monte Carlo simulation (ANES-MC) of polarizable intermolecular potential models is presented. The proposed algorithm is based on Swendsen–Wang filter functions for prediction of success or failure of trial moves in Monte Carlo simulations. The goal was to reduce the amount of calculations involved in ANES-MC electronic moves, by foreseeing the success of an attempt before making those moves. The new method was employed in Gibbs ensemble Monte Carlo (GEMC) simulations of the polarizable simple point charge-fluctuating charge (SPC-FQ) model of water. The overall improvement in GEMC depends on the number of swap attempts (transfer molecules between phases) in one Monte Carlo cycle. The proposed method allows this number to increase, enhancing the chemical potential equalization. For a system with 300 SPC-FQ water molecules, for example, the fractions of early rejected transfers were about 0.9998 and 0.9994 at 373 and 423 K, respectively. This means that the transfer moves consume only a very small part of the overall computing effort, making GEMC almost equivalent to a simulation in the canonical ensemble. 相似文献
89.
Godehard Sutmann 《Journal of Electroanalytical Chemistry》1998,450(2):1946
We have performed molecular dynamics computer simulations of water in homogeneous external electric fields which were varied in a wide range of field strengths. The dielectric response is found to be linear up to fields E0≈0.01 V/Å from where dielectric saturation effects become important. At fields of E0≈3 V/Å a phase transition into an ordered, ice-like structure is observed, which is stabilized through hydrogen-bonds. With an increasing external electric field, the frequency spectrum of the water dynamics shows a remarkable red shift of the intramolecular modes and a blue shift of the librational motions, where the frequency varies quadratically with the field strength. A simple analytical model is discussed which reproduces the observed behavior. 相似文献
90.
Michael A. Collins 《Theoretical chemistry accounts》2002,108(6):313-324
This paper reviews the construction of molecular potential-energy surfaces by an interpolation method which has been developed
over the last several years. The method uses ab initio quantum chemistry calculations of the molecular electronic energy in
an automated procedure to construct global potential- energy surfaces which can be used to simulate chemical reactions with
either classical or quantum dynamics. The methodology is explained and several applications are presented to illustrate the
approach.
Received: 22 February 2002 / Accepted: 2 May 2002 / Published online: 6 November 2002
Correspondence to: M. A. Collins e-mail: collins@rsc.anu.edu.au
Acknowledgements. The methods described in this overview are the result of collaborations with former members of my group, in particular with
Josef Ischtwan, Meredith Jordon, Keiran Thompson and Ryan Bettens. I am also indebted for inspiration gained from many discussions
with my colleagues Leo Radom and Donghui Zhang (National University of Singapore). This work has been supported by the Supercomputer
Facility of the Australian National University and the Australian Partnership for Advanced Computing. 相似文献