Application of the ABEEM/MM model in studying the properties of the water clusters(H_2O)_n(n=7-10)

ABEEM/MM model has been applied to compute the various properties characterizing water clusters(H2O) n(n = 7-10) ,such as optimized geometries,the hydrogen bonds number,cluster interaction en-ergies,stabilities,ABEEM charge distributions,dipole moments,structural parameters,and so on,and to describe the transition reflected by the hexamer region from two-dimensional(from dimer to pen-tamer) to three-dimensional structures(for clusters larger than the hexamer) .     

金属—血清白蛋白的结构研究——Ⅵ.等离子点附近HSA和BSA中Cu(Ⅱ)和Ni(Ⅱ)金属中心的结构

本文用紫外光谱研究了等离子点附近HSA或BSA (?)Cu(Ⅱ)或Ni(Ⅱ)金属中心的结构。结果表明:在pH4.0～5.3时,Cu(Ⅱ)—HSA配合物在低浓度时独具五配位的四方锥构型,高浓度时(>10~(-4)mol·1~(-1))为四配位的四方平面构型,Cu(Ⅱ)—BSA、Ni(Ⅱ)—BSA在上述pH范围内均只存在四方平面构型。Cu(Ⅱ)、Ni(Ⅱ)结合位置与生理pH下的相同,均在白蛋白的N端三肽段上,与Asp~1的α-NH_2、His~3的咪唑基N及两个去质子肽氮配位,Cu(Ⅱ)在HSA中的第五结合基团为Asp~1的羧基。本文还对上述pH效应进行了讨论。     

预测环加成反应区域选择性的一个简易方法

长期以来,我们一直在研究化合物的性能与结构关系的定量化问题,其目的是为了寻求一个定量确定反应物反应活性的简易方法。本文研究了一种确定环加成反应区域选择性的新方法。早在七十年代初期,对于环加成反应的区域选择性问题就有报导,可以通过分子轨道法等加以确定。但是,应用分子轨道法的计算程序过于繁琐,所以应用并不广泛。1989年,S.K.Pal提出了处理这个问题的一个方程,即可以通过活性中心原有的电负性进行推算。这种原有的电负性可以用Huheey方法计算,但是这种计算方法在应用中仍然是相当复杂     

MEDV—13 for QSRR of 62 Polychlorinated Naphthalenes

A molecular electronegativity distance vector based on 13 atomic types (MEDV-13) is used to describe the structures of 62 polychlorinated naphthalene (PCN) congeners and related to the gas chromatographic relative retention indices (RIs) of PCNs. Using multiple linear regression,a 4-variable quantitative structure-retention relationship (QSRR) with the correlation coefficient of estimations(r) being 0.9912 and the root mean square error of estimations (RMSEE) being 31.4 and the correlation coefficient of prediction (q) and the root mean square error of predictions (RMSEP) in the leave-one-out procedure are 0.9898 and 33.76,respectively.     

应用ABEEM/MM模型研究水分子团簇(H2O)n (n=11～16)的性质

应用ABEEM/MM 模型计算了较大的水分子团簇(H2O)n (n=11~16)的各种性质,如：优化的几何构型, 氢键个数, 结合能, 稳定性, ABEEM 电荷分布, 偶极矩, 以及结构参数、平均氢键个数和强度, 增加的团簇结合能等.结果表明,从立方体结构到笼状结构的过渡出现在n=12的水分子团簇中,随着类似于笼状结构特点的不断增强,五元环的富集程度有所增加.     

Calculation of molecular energies by atom-bond electronegativity equalization method

The atom-bond electronegativity equalization method (ABEEM), based on the equalization of the “effective electronegativity” of an atom or a bond in a molecule, allows the direct calculation of the charge distribution and the molecular electronegativity of a large molecule. We now demonstrate how the another important quantity, the total molecular energy, can be computed directly and rapidly. It is shown that, based on the ABEEM, the corresponding ab initio values of the total molecular energy can be reproduced with very satisfactory accuracy. In addition, it has been found that in the expression of the energy functional E[ρ] of the ABEEM, the charge-dependent term C correlates quite well with the total molecular bonding energy.     

Ab initio calculations, electronegativity equalisation and group electronegativity

A correspondence betweenab initio calculations, the principle of electronegativity equalisation and group electronegativity has been established within the framework of Mulliken population analysis. Using this we have calculated electronegativities of some 37 groups/atoms. These electronegativities show excellent linear correlation with¹ J _CC coupling constants in monosubstituted benzenes and Inamoto’si scale and a satisfactory one with Wells’ group electronegativity data. The correspondence however required a scaling of charge (obtained byab initio calculations) and a proportionality between the electronegativity of the neutral group and its hardness. It is shown that using these electronegativity values it is possible to calculate group charges in molecules where groups under consideration interact with each other through σ bond only.     

Tautomerism and the maximum hardness principle

Through the application of the atom–bond electronegativity equalization method (ABEEM) to the calculation of the hardnesses of more than 300 tautomers, it can be seen that the maximum hardness principle is nearly useless to account for their relative stabilities. Moreover, by calculating the energies of these tautomers with the HF, B3LYP, B3PW91, and MP2 methods at the 6‐31G, 6‐31G*, 6‐31G**, 6‐31+G**, 6‐311G**, or 6‐311++G** level, it is found that all these methods may not be always reliable in predicting their relative stabilities. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2006     

Dependence of surface-enhanced Raman scattering from Calf thymus DNA on anions

Dependence of surface-enhanced Raman scattering (SERS) from Calf thymus DNA on anions is investigated.With the silver colloid,the bands at 732,960 and 1333 cm-1 for adenine (A),1466 cm-1 for deoxyribose,and 1652 cm-1 for the C=O group of thymine (T) are observably enhanced.With the presence of the Cl- or SO42- anions,the bands at 732 and 1326/1329 cm-1 for the symmetric stretching and skeletal vibrational modes of adenine (A) are dramatically enhanced,and the enhancement effect with the SO24- ion is more than that with the Cl- ion.The experimental results show that the DNA molecule can be adsorbed on the silver colloid particles through the C6N and N7 of adenine (A),the C=O of thymine (T) and deoxyribose.Moreover,the formed hydrogen bonding of the Cl- or S2O4- ions to the C6NH2 group of adenine (A) can induce larger C6N electronegativity,which is favor for the C6N/N7 cooperative adsorption on the (Ag) n colloid particles.     

锌-牛血清白蛋白的电荷转移谱带研究

研究了1：1锌－牛血清白蛋白体系的差示吸收光谱,使用文献数据计算了组氨酸咪唑基的三个π轨道的光学电负性,利用这些数据归属了Zn^2 离子与牛血清白蛋白所形成的配合物的两条电荷转移谱带,推测它们分别为白蛋白组氨酸咪唑基的π2,π3,轨道向Zn(Ⅱ)离子的LMCT跃迁。