Defective Continuous Hydrogen‐Bond Networks: An Alternative Interpretation of IR Spectroscopy

We apply our previously developed deconvolution method and interpretation to analyze changes in the OH stretching band [ν(OH) band] of low‐concentration (≤0.2 m) aqueous solutions of NaCl and KCl. We treat these simple, monovalent ions as defects in the hydrogen‐bond network of pure water and quantify the changes in the spectra at low defect concentration with an “order parameter”. Order‐parameter analysis of difference spectra of the two solutions leads to hydration numbers of 7.0±1.0 and 5.9±0.3 for K⁺ and Na⁺, respectively. Additionally, we find that changes in the ν(OH) band due to low concentrations of ions result from changes in the topology of the hydrogen‐bond network.     

How Does a Membrane Protein Achieve a Vectorial Proton Transfer Via Water Molecules?

We present a detailed mechanism for the proton transfer from a protein‐bound protonated water cluster to the bulk water directed by protein side chains in the membrane protein bacteriorhodopsin. We use a combined approach of time‐resolved Fourier transform infrared spectroscopy, molecular dynamics simulations, and X‐ray structure analysis to elucidate the functional role of a hydrogen bond between Ser193 and Glu204. These two residues seal the internal protonated water cluster from the bulk water and the protein surface. During the photocycle of bacteriorhodopsin, a transient protonation of Glu204 leads to a breaking of this hydrogen bond. This breaking opens the gate to the extracellular bulk water, leading to a subsequent proton release from the protonated water cluster. We show in detail how the protein achieves vectorial proton transfer via protonated water clusters in contrast to random proton transfer in liquid water.     

Intermolecular interactions and the structure of near-surface layers in heterogeneous two-component systems based on nanocystallites of titanium dioxide

This contribution provides the theoretical background for the structure-determining role of hydrogen bonding in the formation of a near-surface layer of titania nanocrystallites, previously revealed by the authors in the investigation of IR experimental spectra of two-component solid mixtures of nanocrystalline titanium dioxide with benzophenone or 4-pentyl-4′-cyanobiphenyl. DFT calculations (B3LYP) in 6-31+G(d) basis set is used to simulate the structure and IR spectra of free molecules of water, 4-pentyl-4′-cyanobiphenyl, benzophenone and their H-complexes formed in the near-surface layers of titania nanocrystallites due to presence of water adsorbed on their surfaces. Using the results of simulation and analysis of IR spectrum bands corresponding to stretching vibrations of polar bonds O-H, C=O, C≡N, the formation mechanism of near-surface layers of titania nanocrystallites in the considered heterogeneous two-component systems is theoretically substantiated: they are formed by hydrogen-bonded complexes involving components of the mixture and water.     

Study of the temperature effect on IR spectra of crystalline amino acids,dipeptids, and polyamino acids. III. α-Glycylglycine

The IR spectra of α-glycylglycine (H₃ ⁺N-CH₂-CO-NH-CH₂-COO^?) are studied in the temperature range of 93 to 413 K. Changes in the spectra due to temperature variation are correlated with the previously obtained X-ray diffraction data on anisotropic compression of the structure and changes in the parameters of hydrogen bonding. Changes in the vibrational frequencies of NH ₃ ⁺ and COO groups in the IR spectrum of α-glycylglycine are compared to changes in the vibrational frequencies of the same groups in the IR spectra of polymorphs of glycine, L- and DL-serine.     

Composition of heteroassociates formed in a binary liquid system HF-Et<Subscript>2</Subscript>O

IR spectra and densities of solutions in a binary liquid system (BLS) HF-Et₂O were measured for the first time for the molar ratios of the components ranging from 1: 12 to 14: 1 and 31: 1, respectively. An analysis of the concentration dependences of the normalized (to the total number of moles of the BLS components in 1 L) absorbance and excess density of the studied solutions revealed that they contained heteroassociates with stoichiometric ratios of the molecules of 1: 2, 2: 1, 4: 1, and 11–12: 1. The concentration range in which each associate is formed in the binary mixture HF-Et₂O was estimated for all the associates. The results obtained were compared with the data on the HF: Solv ratios (Solv is solvent) in molecular complexes that prevail in the seven BLS HF-organic solvent studied earlier. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1833–1839, September, 2008.     

Chemical structure and surface properties of the polyurethane cationomers

Polyurethane cationomers were synthesised in the reaction of various diisocyanates with polyoxypropylene glycol and two N-alkyldiethanolamines. The obtained isocyanate prepolymers were then extended in the aqueous medium by means of 1,6-hexamethylenediamine; stable aqueous dispersions were thus obtained, which were applied to and distributed over the poly(tetrafluoroethylene) surface. After evaporation of water from those dispersions, thin polymer coatings were produced. The analyses with the use of ¹H, carbon-13 nuclear magnetic resonance and infrared spectroscopy methods confirmed chemical structures of synthesised cationomers. Also, attempts were made to quantitatively characterise polarities of those structures by means of factors that were defined especially for that purpose. Moreover, the physical model of van Oss–Good and wetting angles for coatings obtained from the polyurethane cationomers in question, measured with the use of standard liquids with various polarity specifications, were utilised to determine the surface free energy values for the obtained ionomers.     

The basicity of unsaturated hydrocarbons as probed by hydrogen-bond-acceptor ability: bifurcated N-H+ ...pi hydrogen bonding

The competitive substitution of the anion (A(-)) in contact ion pairs of the type [Oct3NH+]B(C6F5)4 (-) by unsaturated hydrocarbons (L) in accordance with the equilibrium Oct3NH+...A(-) + nL right arrow over left arrow [Oct3NH+...Ln]A(-) has been studied in CCl4. On the basis of equilibrium constants, K, and shifts of nuNH to low frequency, it has been established that complexed Oct3NH...+Ln cations with n=1 and 2 are formed and have unidentate and bifurcated N--H+...pi hydrogen bonds, respectively. Bifurcated hydrogen bonds to unsaturated hydrocarbons have not been observed previously. The unsaturated hydrocarbons studied include benzene and methylbenzenes, fused-ring aromatics, alkenes, conjugated dienes, and alkynes. From the magnitude of the redshifts in the N--H stretching frequencies, Delta nuNH, a new scale for ranking the pi basicity of unsaturated hydrocarbons is proposed: fused-ring aromatics相似文献   

Simultaneous two color image capture for sub-diffraction localization fluorescence microscopy

A sub-diffraction limit fluorescence localization microscope was constructed using a standard cooled 1.4 mega-pixel fluorescence charge-coupled device (CCD) camera to simultaneously resolve closely adjacent paired quantum dots on a flat surface with emissions of 540 and 630 nm. The images of the overlapping Airy discs were analyzed to determine the center of the point spread function after noise reduction using Fourier transformation analysis. The Cartesian coordinates of the centers of the point spread functions were compared in serial images. Histograms constructed from serial images fit well to Gaussian functions for resolving two quantum dots separated by as little as 10 nm in the x–y coordinates. Statistical analysis of multiple pairs validated discrimination of inter-fluorophore distances that vary by 10 nm. The method is simple and developed for x–y resolution of dilute fluorophores on a flat surface, not serial z sectioning.     

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通过红外可见内窥镜诊断系统对EAST等离子体芯部逃逸电子的同步辐射功率谱进行了分析,得出低能段逃逸电子同步辐射主要在红外波段,随着逃逸电子能量的增加,同步辐射向短波方向移动进入可见光波段。在欧姆放电条件下,对逃逸电子同步辐射所产生的的红外可见光进行了成像分析,同时研究了EAST等离子体在低杂波和中性束注入加热条件下的逃逸电子行为。实验结果显示,低杂波和 NBI 的投入总体抑制电子的逃逸,但低杂波投入初期产生的快电子对逃逸电子的产生具有促进作用。