Monte Carlo Simulation of Electron Transport and X-Ray Generation. II. Radiative Processes and Examples in Electron Probe Microanalysis

Theoretical models for Monte Carlo simulation of radiative processes, i.e. bremsstrahlung and characteristic x-ray emission, are presented. Possible strategies for simulating electron transport are briefly described. For mechanisms involving energy loss and angular deflections, difficulties for strict implementation of accurate numerical differential cross sections still remain due to the strong correlations between these variables. Practical solutions for the case of inelastic collisions and bremsstrahlung emission are described. Comparisons of simulation results with experimental data for several problems of interest in electron probe microanalysis are presented.     

Vibrational spectra of 2-biphenylmethanol. Spectrum simulation and molecular structure

The vibrational spectra of a solid crystalline sample of 2-biphenylmethanol have been measured at room temperature. The IR absorption spectra were recorded in the range 400 cm^–1–3600 cm^–1; Raman spectra were measured in the range 10 cm^–1–1640 cm^–1. The direct mechanical and optoelectronic problems were solved using the fragment method realized as Lev-100 software; the intensity distribution in the IR spectrum of 2-biphenylmethanol was obtained by the same method. The experimental Raman and IR absorption spectra were interpreted by analyzing the calculated data on the frequencies and forms of normal vibrations and their intensities in the IR spectra. IR absorption spectra were simulated for several models of 2-biphenylmethanol conformers that differ in the mutual orientation of fragments. Based on the results of simulation and comparison of the calculated and experimental spectra of conformers we suggested a model for the conformer realized in the solid phase under normal conditions.Original Russian Text Copyright © 2004 by L. M. Babkov, J. Baran, N. A. Davydova, J. I. Kukielskii, and S. V. TrukhachevTranslated from Zhurnal Strukturnoi Khimii, Vol. 45, No. 4, pp. 624–631, July–August, 2004.This revised version was published online in April 2005 with a corrected cover date.     

Monte‐Carlo simulation of spatial distribution of characteristic x‐rays in multi‐film targets: source size of Al Kα x‐rays in W/Al film targets

A Monte‐Carlo simulation approach has been applied to describe the spatial distribution of characteristic x‐rays in W/Al film targets of different combinations of film thicknesses for the optimal design of a small‐sized x‐ray source having a high x‐ray intensity. The result has led to optimal combinations of W and Al film targets for 100 kV electrons, e.g. W(1 µm)/Al(20 µm), W(3 µm)/Al(15 µm) and W(5 µm)/Al(8 µm). These Al/W targets could be used as x‐ray sources for a medical instrument currently under development. Copyright © 2004 John Wiley & Sons, Ltd.     

A Semi‐Microscopic Modeling for Polymer Flow Reactors

Summary: A nonisothermal plug‐flow reactor for ethylene polymerization is reexamined so as to illustrate the principle and effect of a refined, semi‐microscopic modeling. The novel feature of the current simulation is the application of a Monte Carlo scheme to exactly solve the free‐radical polymerization involved, whereas a reptation‐based molecular theory is introduced in a self‐consistent manner to simulate more accurately the reactant fluid viscosity during polymerization. The simulation is shown to capture some in‐depth consequences of reaction‐transport coupling that cannot be revealed by a traditional, macroscopic type of modeling. The principle of a future extension for dealing with more complex flow reactors is briefly discussed.

Comparison of the predicted temperature profile between Monte Carlo‐based simulation and the ones using moment equations together with two different weight distributions is shown with experimental data for LDPE.     

Accelerating molecular dynamic simulation on the cell processor and Playstation 3

Implementation of molecular dynamics (MD) calculations on novel architectures will vastly increase its power to calculate the physical properties of complex systems. Herein, we detail algorithmic advances developed to accelerate MD simulations on the Cell processor, a commodity processor found in PlayStation 3 (PS3). In particular, we discuss issues regarding memory access versus computation and the types of calculations which are best suited for streaming processors such as the Cell, focusing on implicit solvation models. We conclude with a comparison of improved performance on the PS3's Cell processor over more traditional processors.     

PHASE SEPARATION IN BIMODAL MOLECULAR WEIGHT HIGH DENSITY POLYETHYLENE WITH DIFFERING BRANCH CONTENTS BY MOLECULAR DYNAMICS AND MESODYN SIMULATION

The phase behavior of bimodal molecular weight high density polyethylene(BHDPE) in solid state was investigated.Hildebrand solubility parameters(δ) were calculated for the models of blends of higher molecular weight branch polyethylene(HBPE) with different branch contents and lower molecular weight linear polyethylene(LLPE),by using molecular dynamics(MD) simulations.These 3 values were then used to calculate the corresponding Flory-Huggins interaction parameter(x) between HBPE and LLPE models.In order t...     

十二烷基苯磺酸钠在SiO2表面聚集的分子动力学模拟

采用分子动力学方法研究了阴离子表面活性剂十二烷基苯磺酸钠(SDBS)在无定形SiO2固体表面的吸附. 设置不同的水层厚度, 观察固液界面和气液界面吸附的差异. 模拟发现表面活性剂分子能够在短时间内吸附到SiO2表面, 受碳链和固体表面之间相互作用的影响形成表面活性剂分子层, 并依据吸附量的大小形成不同的聚集结构; 在水层足够厚的情况下, 由于有较多的表面活性剂分子吸附在固体表面,从而形成带有疏水核心的半胶束结构; 计算得到的成对势表明极性头与钠离子或水分子之间的结合或解离与二者之间的能垒有关, 解离能垒远大于结合能垒, 引起更多Na+聚集在极性头周围而只有少数Na+存在于溶液中; 无论气液还是固液界面, 极性头均伸向水相, 与水分子形成不同类型的氢键. 模拟表明, 分子动力学方法可以作为实验的一种补充, 为实验提供必要的微观结构信息.     

氧气在聚丙烯内吸附和扩散的分子模拟

采用巨正则Monte Carlo和分子动力学模拟相结合的方法研究了氧气在不同聚合度的聚丙烯内的吸附和扩散. 模拟结果表明, 随聚丙烯聚合度的增加, 聚丙烯对氧气的吸附量逐渐增加, 而氧气在聚丙烯内的扩散系数减小; 当聚合度增大到一定程度时, 吸附量和扩散系数都趋于一稳定值. 随温度的升高, 氧气在聚丙烯内的吸附量减少, 而扩散系数增大. 本文还应用自由体积理论探讨了氧气在聚合物内扩散的机理, 发现氧气在聚丙烯内以空穴形式存在的自由体积之间扩散, 即氧气先在一个空穴内不停振动, 然后通过聚丙烯链段运动形成的通道跳跃到下一个空穴来完成扩散. 结果表明, 较高聚合度的聚合物材料在常温及低温下使用对于其在食品包装材料中的应用是有利的, 这为食品包装材料行业相关产品的应用开发提供了一定的指导和依据.     

拟南芥TIR1与生长素IAA相互作用的分子对接及分子动力学研究

基于最新得到的拟南芥运输抑制剂响应蛋白质1(TIR1)与吲哚乙酸(IAA)复合物的晶体结构, 使用分子对接方法和分子动力学方法对TIR1与生长素IAA相互作用的方式进行了研究. 分子对接结果表明, 通过逐级考察辅酶InsP₆和中心水分子的影响, 发现辅酶InsP₆和中心水分子对生长素IAA正确结合到活性位点有重要作用. 分子动力学结果表明, 复合物体系在整个模拟过程中较为稳定, 2个水分子相继作为中心水分子与生长素IAA形成了稳定的氢键作用, IAA与活性位点处残基的相互作用与晶体结构相比略有差异.     

Fine pore mouth structure of molecular sieve carbon with GCMC-assisted supercritical gas adsorption analysis

N₂ adsorption isotherms of molecular sieve carbon were measured at 77 K and 303 K. The Ar adsorption isotherms of molecular sieve carbon samples were also measured at 303 K. The grand canonical Monte Carlo (GCMC) simulation technique was applied to calculate the N₂ and Ar adsorption isotherms at 303 K using the ultramicropore volume determined by H₂O adsorption. The comparative method of experimental and simulated isotherms of supercritical N₂ and Ar at 303 K gave the width of the micropore mouth of the molecular sieve carbon, which can be applied to the ultramicropore width determination for other noncrystalline porous solids.