Performance of revised STO(1M)-3G basis set for prediction of 5-fluorocytosine chemical shifts

Nuclear shieldings and chemical shifts of 5-fluorocytosine (5FC) were predicted in the gas phase and DMSO solution modeled by polarizable continuum model using B3LYP density functional and revised STO(1M)-3G basis set. For comparison, eight arbitrary selected basis sets including STO-3G and medium-size Pople-type and larger dedicated Jensen-type ones were applied. The former basis sets were significantly smaller, but the calculated structural parameters, harmonic vibrational frequencies, were very accurate and close to those obtained with larger, polarization-consistent ones. The predicted ¹³C and ¹H chemical shieldings of 5FC and cytosine, selected as parent molecule, were acceptable (root mean square for ¹³C chemical shifts in DMSO of about 5 ppm and less) though less accurate than those calculated with large basis sets, dedicated for prediction of nuclear magnetic resonance parameters.     

Systematic studies on the computation of nuclear magnetic resonance shielding constants and chemical shifts: the density functional models

We present a systematic density functional investigation on the prediction of the 13C, 15N, 17O, and 19F NMR properties of 23 molecules with 21 density functionals. Extensive comparisons are made for both 13C magnetic shieldings and chemical shifts with respect to the gas phase experimental data and the best CCSD(T) results. We find that the OPBE and OPW91 exchange-correlation functionals perform significantly better than some popular functionals such as B3LYP and PBE1PBE, even surpassing, in many cases, the standard wavefunction-based method MP2. Further analysis has been performed to explore the individual role played by various exchange and correlation functionals. We find that the B88 and PBE exchange functionals have a too strong tendency of deshielding, leading to too deshielded magnetic shielding constants; whereas the OPTX exchange functional performs remarkably well. We claim that the main source of error arises from the exchange functional, but correlation functional also makes important contribution. We find that the correlation functionals may be grouped into two classes. class A, such as LYP and B98, leads to deshielded NMR values, deteriorating the overall performance; whereas class B, such as PW91 and PBE, generally increases the absolute shieldings, which complements the exchange functionals, leading to improved results in the calculation of NMR data.     

Theoretical and experimental 13C and 15N NMR investigation of guanylhydrazones in solution

Experimental and theoretical ¹⁵N and ¹³C NMR data for the three nitrobenzaldehyde guanylhydrazones are reported. The theoretical data were obtained using sequential molecular dynamics/quantum mechanics methodology for the calculation of flexible molecules in a condensed phase, followed by the use of the GIAO/DFT method with the 6–311G** basis set. The experimental ¹⁵N chemical shifts for the guanylhydrazones are compared with the calculated shifts. Copyright © 2003 John Wiley & Sons, Ltd.     

A study of the tautomerism of β-dicarbonyl compounds with special emphasis on curcuminoids

Six β-diketones related to curcumin and curcumin itself have been studied by ¹³C NMR spectroscopy in chloroform in order to determine the equilibrium constant between the two keto/enol tautomers. In order to do this GIAO/B3LYP/6-31G^∗∗ calculations of absolute shieldings (σ, ppm) were carried out. To establish relationships between σ and experimental chemical shifts (δ, ppm), three simple β-diketones (acetylacetone, dibenzoylmethane and benzoylacetone) have been studied. The preference for different groups to be conjugated with the CO has been determined.     

NMR property calculations and experimental study of the 1,6-epoxycarvone and α-epoxypinene: a comparison of models

This work aims at using theoretical calculations of shielding tensors (σ) through different methods [gauge-independent atomic orbital (GIAO), continuous set of gauge transformations (CSGT) and individual gauges for atoms in molecules (IGAIM)] and spin-spin coupling constants J using GIAO method to compare these methods and to corroborate the data obtained with the assignment of all of (1)H and (13)C NMR signals and the relative stereochemistry of the 1,6-epoxycarvone and the α-epoxypinene. All the (1)H and (13)C NMR signals were assigned unequivocally. The stereochemistry for the epoxides is trans and the B3LYP theory level with CSGT and IGAIM methods is the best choice to evaluate theoretical chemical shifts for compounds studied.     

NMR assignment in regioisomeric hydroquinones

A set of regioisomeric pairs of tricyclic hydroquinones, analogues of antitumor 9,10-dihydroxy-4,4-dimethyl-5,8-dihydroanthracen-1(4H)-one (1) and other derivatives, were synthesized and their regiochemistry and NMR spectra assigned by using (1)H-detected one-bond (C-H) HMQC and long-range C-H HMBC, in good agreement with theoretical O3LYP/Alhrichs-pVTZ calculations. The 5-hydroxymethyl derivatives (11, 15, 19) showed a (3)J(H, H) coupling constant of methylene protons evidencing the presence of a seven-membered intramolecular hydrogen bonded ring, not observed for the 8-hydroxymethyl isomers.     

The structure of the anti‐aging agent J147 used for treating Alzheimer's disease

The molecular structure of the anti‐aging agent J147 [systematic name: (E)‐N‐(2,4‐dimethylphenyl)‐2,2,2‐trifluoro‐N′‐(3‐methoxybenzylidene)acetohydrazide], C₁₈H₁₇F₃N₂O₂, has been determined at 150 K. The crystal structure corresponds to the minimum‐energy conformation in the gas phase calculated by density functional theory (DFT). 15 other conformations have been calculated and compared with the minimum, denoted 1111 . NMR spectroscopic data have been obtained and compared with those from Gauge Independent Atomic Orbital (GIAO) calculations. DFT calculations allow the reduction of the 16 possible rotamers to the four most stable (i.e. 1111 , 1112 , 1121 and 1222 ); in addition, the calculated barriers connecting these minima are low enough to permit their interconversion. Comparison of the NMR spectroscopic results, both experimental and calculated, point to the 1121 isomer being present in chloroform solution.     

Transmission of polar substituent effects across the cubane ring system: 19F substituent chemical shifts (SCS) of 4‐substituted (X) cub‐1‐yl fluorides revisited

¹⁹F NMR shieldings of 4‐substituted (X) cub‐1‐yl fluorides ( 4 ) for a set of substituents (X?H, NO₂, CN, NC, CF₃, COOH, F, Cl, HO, NH₂, CH₃, Si(CH₃)₃, Li, O^? and NH) covering a wide range of electronic substituent effects were calculated using the DFT‐GIAO theoretical model. The level of theory, B3LYP/6‐311+G(2d,p), provided ¹⁹F substituent chemical shifts (SCS) in good agreement with experimental values where known. By means of NBO analysis, various molecular parameters were obtained from the optimized geometries. Linear regression analysis was employed to explore the relationship between the calculated ¹⁹F SCS and polar field, resonance and group electronegativity substituent constants (σ_F, σ_R and σ_x, respectively) and also the NBO derived molecular parameters (fluorine natural charges (Q_n), electron occupancies on fluorine of lone pairs (n_F) and occupation number of the C? F antibonding orbital (σ_CF*)). The key determining parameters appear to be n_F and σ_CF*(occup). Both factors are a function of the electrostatic field influence of the substituent (σ_F effect) but are counteractive in their influence on the shifts. No evidence for a significant resonance effect influence on the shifts could be identified. Copyright © 2009 John Wiley & Sons, Ltd.     

Modeling of the Response of Hydrogen Bond Properties on an External Electric Field: Geometry,NMR Chemical Shift,Spin-Spin Scalar Coupling

The response of the geometric and NMR properties of molecular systems to an external electric field has been studied theoretically in a wide field range. It has been shown that this adduct under field approach can be used to model the geometric and spectral changes experienced by molecular systems in polar media if the system in question has one and only one bond, the polarizability of which significantly exceeds the polarizability of other bonds. If this requirement is met, then it becomes possible to model even extreme cases, for example, proton dissociation in hydrogen halides. This requirement is fulfilled for many complexes with one hydrogen bond. For such complexes, this approach can be used to facilitate a detailed analysis of spectral changes associated with geometric changes in the hydrogen bond. For example, in hydrogen-bonded complexes of isocyanide C≡¹⁵N-¹H⋯X, ¹J(¹⁵N¹H) depends exclusively on the N-H distance, while δ(¹⁵N) is also slightly influenced by the nature of X.     

Is it possible to use the 31P chemical shifts of phosphines to measure hydrogen bond acidities (HBA)? A comparative study with the use of the 15N chemical shifts of amines for measuring HBA

The geometries, energies, and nuclear magnetic resonance (NMR) chemical shifts of 3 bases (trimethylphosphine, trimethylamine, and trimethylphosphine oxide), their 3 protonated cations, and 15 hydrogen‐bonded complexes (corresponding to the HF, HNC, HCN, HCCH, H₂O, and CH₃OH Brønsted acids) have been calculated at the B3LYP/6‐311++G(d,p) level. The determination of hydrogen bond acidities by NMR is classically performed using the ³¹P chemical shifts Me₃PO. This method is more reliable than the use of the ¹⁵N NMR chemical shifts of Me₃N. This work shows that the ³¹P NMR chemical shifts of Me₃P cannot be used. The raison of the difference between Me₃P on one hand and Me₃PO and Me₃N on the other will be discussed.