Anomalous diffusion in a random velocity field

We construct diffusions in random velocity fields which present anomalous superdiffusive behavior. The mean square displacement can be made to have any power lawt for 1<2. Higher moments and characteristic functions are also investigated.     

空间展布体系中由化学反应-扩散-热传导耦合导致的温度场对称破缺

分析了由于化学反应-扩散-热传导耦合而导致的非等温非均匀体系中温度场对称破缺.研究结果表明,在一定的边界条件下,甚至是单组分化学反应-扩散-热传导体系,温度场的这种自组织进程也不可避免.作为温度场结构的一个范例,进一步从解析解及计算机模拟两个方面研究了小展布非等温的Lindeman模型;结果表明,温度场出现时空自组织的阈值不仅与本征参数有关,而且与体系的边界条件及外控约束相关,揭示出了诱发或避免这种温度场时空自组织之途径.     

Normal coordinate treatment of actinide(IV)-hexabromides

Molecular force field studies of hexabromo-thorates(IV) and-uranates(IV) have been carried out using four different force field models. Weighted least square adjustment has been used to fit the observed frequencies. Mean amplitudes of vibration have also been calculated at 0°K and 298°K. The trends of force constants and mean amplitudes have also been discussed.

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Normal-Koordinaten Berechnungen an Actiniden(IV)-hexabromiden

Zusammenfassung Es wurden für die Rechnungen an Hexabromo-thoraten(IV) und-uranaten(IV) vier verschiedene Modelle herangezogen. Die beobachteten Frequenzen wurden mittels gewichteter Kleinster-Fehlerquadrat-Methode angepaßt. Die Trends bei den Kraftkonstanten und den mittleren Amplituden der einzelnen Verbindungen werden diskutiert.

     

Modified AutoDock for accurate docking of protein kinase inhibitors

Protein kinases are an important class of enzymes controlling virtually all cellular signaling pathways. Consequently, selective inhibitors of protein kinases have attracted significant interest as potential new drugs for many diseases. Computational methods, including molecular docking, have increasingly been used in the inhibitor design process [1]. We have considered several docking packages in order to strengthen our kinase inhibitor work with computational capabilities. In our experience, AutoDock offered a reasonable combination of accuracy and speed, as opposed to methods that specialize either in fast database searches or detailed and computationally intensive calculations.However, AutoDock did not perform well in cases where extensive hydrophobic contacts were involved, such as docking of SB203580 to its target protein kinase p38. Another shortcoming was a hydrogen bonding energy function, which underestimated the attraction component and, thus, did not allow for sufficiently accurate modeling of the key hydrogen bonds in the kinase-inhibitor complexes.We have modified the parameter set used to model hydrogen bonds, which increased the accuracy of AutoDock and appeared to be generally applicable to many kinase-inhibitor pairs without customization. Binding to largely hydrophobic sites, such as the active site of p38, was significantly improved by introducing a correction factor selectively affecting only carbon and hydrogen energy grids, thus, providing an effective, although approximate, treatment of solvation.     

Magnetic field effects on the crystal orientation and surface morphology of electrodeposited iron films

The effects of a magnetic field (5 T) on crystal orientation and surface morphology were investigated for iron films electrodeposited in ferrous aqueous solution. XRD measurements for the iron films showed that the preferred orientation parallel to the substrate was determined by the current density and not influenced by the magnetic field. By X-ray pole figure measurements, however, the crystal texture of the iron films electrodeposited at 10 mA cm^–2 and 30 mA cm^–2 was found to be controlled by the magnetic field. That is, the (110) planes were orientated in same direction of the magnetic field vector at angles of 30° and 35° to the direction normal to the substrate plane at 10 mA cm^–2 and 30 mA cm^–2, respectively. When the morphology was observed by SEM, iron grains at 30 mA cm^–2 changed from a triangular pyramid shape at 0 T to a complex star-like shape at 5 T.Presented at the 3rd International Symposium on Electrochemical Processing of Tailored Materials held at the 53rd Annual Meeting of the International Society of Electrochemistry, 15–20 September 2002, Düsseldorf, Germany     

Application of HPLC to measure vanadium in environmental,biological and clinical matrices

Vanadate and vanadium compounds exist in many environmental, biological and clinical matrices, and despite the need only limited progress has been made on the analysis of vanadium compounds. The vanadium coordination chemistry of different oxidation states is known, and the result of the characterization and speciation analysis depends on the subsequent chemistry and the methods of analysis. Many studies have used a range of methods for the characterization and determination of metal ions in a variety of materials. One successful technique is high performance liquid chromatography (HPLC) that has been used mainly for measuring total vanadium level and metal speciation. Some cases have been reported where complexes of different oxidation states of vanadium have been separated by HPLC. Specifically reversed phase (RP) HPLC has frequently been used for the measurement of vanadium. Other HPLC methods such as normal phase, anion-exchange, cation-exchange, size exclusion and other RP-HPLC modes such as, ion-pair and micellar have been used to separate selected vanadium compounds. We will present a review that summarizes and critically analyzes the reported methods for analysis of vanadium salts and vanadium compounds in different sample matrices. We will compare various HPLC methods and modes including sample preparation, chelating reagents, mobile phase and detection methods. The comparison will allow us to identify the best analytical HPLC method and mode for measuring vanadium levels and what information such methods provide with regard to speciation and quantitation of the vanadium compounds.     

A new GROMOS force field for hexopyranose-based carbohydrates

A new parameter set (referred to as 45A4) is developed for the explicit-solvent simulation of hexopyranose-based carbohydrates. This set is compatible with the most recent version of the GROMOS force field for proteins, nucleic acids, and lipids, and the SPC water model. The parametrization procedure relies on: (1) reassigning the atomic partial charges based on a fit to the quantum-mechanical electrostatic potential around a trisaccharide; (2) refining the torsional potential parameters associated with the rotations of the hydroxymethyl, hydroxyl, and anomeric alkoxy groups by fitting to corresponding quantum-mechanical profiles for hexopyranosides; (3) adapting the torsional potential parameters determining the ring conformation so as to stabilize the (experimentally predominant) (4)C(1) chair conformation. The other (van der Waals and nontorsional covalent) parameters and the rules for third and excluded neighbors are taken directly from the most recent version of the GROMOS force field (except for one additional exclusion). The new set is general enough to define parameters for any (unbranched) hexopyranose-based mono-, di-, oligo- or polysaccharide. In the present article, this force field is validated for a limited set of monosaccharides (alpha- and beta-D-glucose, alpha- and beta-D-galactose) and disaccharides (trehalose, maltose, and cellobiose) in solution, by comparing the results of simulations to available experimental data. More extensive validation will be the scope of a forthcoming article. (c) 2005 Wiley Periodicals, Inc. J Comput Chem 26: 1400-1412, 2005.     

Metal complexes of the diuretic drug furosemide

New complexes of the formulaeM(fur)₂·2H₂O (M = Mn, Cu, Zn),M(fur)₂·3H₂O (M = Co, Ni, Cd), Hg₂(fur)₃Cl₂·2H₂O, Pd(fur)Cl·H₂O and Rh(fur)₃·3H₂O, wherefurH = 4-chloro-N-(2-furfuryl)-5-sulfamoylanthranilic acid, have been prepared and characterized by conductivity measurements, X-ray powder patterns, thermal methods, effective magnetic moments as well as by IR, ligand field,¹H-NMR and ESR spectroscopic studies. The anionfur ^– shows a chelated bidentate O(carboxylato), N(imino)-coordinating behaviour.

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Metallkomplexe der diuretischen Droge Furosemid

Zusammenfassung Neue Komplexe der Verbindungen:M(fur)₂·2H₂O (M = Mn, Cu, Zn),M(fur)₂·3H₂O (M = Co, Ni, Cd), Hg₂(fur)₃Cl₂·2H₂O, Pd(fur)Cl·H₂O und Rh(fur)₃·3H₂O, wobeifurH 4-chlor-N-(2-furfuryl)-5-sulfamoylanthanilsäure ist, wurden dargestellt. Die Komplexe wurden durch Leitfähigkeitsmessungen, Röntgen-Pulver-Aufnahmen, thermogravimetrische Analysen, Messungen des effektiven magnetischen Dipolemomentes sowie durch spektroskopische Untersuchungen (IR,¹H-NMR und ESR) charakterisiert. Das Anionfur ^– zeigt das Verhalten einer Chelat-bidentat-O(carboxylato),N(imino)-Koordination.

     

Ising-like field theory

A field theory model onR ² in which the basic fields are Ising spins instead of Gaussian spins is examined. Using statistical mechanics techniques we discuss the ultraviolet and the infrared problems. In particular we discuss a technique yielding the asymptotic expansion in of the ground state energy, as 0, without using the cluster expansion.Supported in part by Consiglio Nazionale delle Ricerche.     

Redox and Conformational Equilibria and Dynamics of Cytochrome c at High Electric Fields

Cytochrome c (Cyt‐c) adsorbed in the electrical double layer of the Ag electrode/electrolyte interface has been studied by stationary and time‐resolved surface‐enhanced resonance Raman spectroscopy to analyse the effect of strong electric fields on structure and reaction equilibria and dynamics of the protein. In the potential range between +0.1 and ?0.55 V (versus saturated calomel electrode), the adsorbed Cyt‐c forms a potential‐dependent reversible equilibrium between the native state B1 and a conformational state B2. The redox potentials of the bis‐histidine‐coordinated six‐coordinated low‐spin and five‐coordinated high‐spin substates of B2 were determined to be ?0.425 and ?0.385 V, respectively, whereas the additional six‐coordinated aquo‐histidine‐coordinated high‐spin substate was found to be redox‐inactive. The redox potential for the conformational state B1 was found to be the same as in solution in agreement with the structural identity of the adsorbed B1 and the native Cyt‐c. For all three redox‐active species, the formal heterogeneous electron transfer rate constants are small and of the same order of magnitude (3–13 s^?1), which implies that the rate‐limiting step is largely independent of the redox‐site structure. These findings, as well as the slow and potential‐dependent transitions between the various conformational (sub‐)states, can be rationalized in terms of an electric field‐induced increase of the activation energy for proton‐transfer steps linked to protein structural reorganisation. Further increasing the electric field strength by shifting the electrode potential above +0.1 V leads to irreversible structural changes that are attributed to an unfolding of the polypeptide chain.