Use of headspace capillary GC to study the development of volatile compounds in fresh fruit

The composition of volatile compounds produced by fruit during growth and post-harvest storage and ripening has been studied and the different headspace methods compared. Static and dynamic headspace sampling have been compared and evaluated according to their capacity to collect and concentrate volatiles from the atmosphere surrounding the fruits, and FID, MSD, and organoleptic detection have been compared. The results emphasize that the headspace sampling procedure selected is crucial to the performance of subsequent analysis.     

对在建标技术报告中正确贯彻《测量不确定度表示指南》的理解

针对计量人员在贯彻《测量不确定表示指南》,尤其是在撰写“建标技术报告”时遇到的一些体问题,进行了探讨。     

Improving the lower detection limit of potentiometric sensors by covalently binding the ionophore to a polymer backbone

The lower detection limit of polymeric membrane ion-selective electrodes (ISEs) is impaired by zero-current ion fluxes through the organic phase. This adverse effect is largely eliminated by covalently attaching the ionophore to a polymer backbone. To this purpose, the Pb²⁺-selective ligand, 4-tert-butylcalix[4] arene-tetrakis(N,N′-dimethylthioacetamide) is substituted on its upper rim by a diol derivative which is subsequently copolymerized with poly(tetrahydrofuran)diol and 2,2,4-trimethylhexamethylene diisocyanate to the corresponding polyurethane. By measurements on sandwich membranes, it is shown that through binding the ionophore to the polymer, the mobility of Pb²⁺ in the ISE membrane is strongly reduced. As a consequence, the response range of such an ISE is extended by several orders of magnitude. This is the case even when using an internal electrolyte that with an ISE based on a mobile ionophore leads to strong deviations from the linear response because of ion uptake from the sample into the membrane or ion release from the membrane into the sample. With a conventional inner filling solution of 10⁻¹ M Pb(NO₃)₂, a lower detection limit of 1.7×10⁻⁹ M Pb²⁺ has been achieved in the presence of 10⁻⁴ M Na⁺.     

A two-color-change, nanoparticle-based method for DNA detection

Herein, we describe the detailed synthesis of Ag/Au core-shell nanoparticles, the surface-functionalization of these particles with thiolated oligonucleotides, and their subsequent use as probes for DNA detection. The Ag/Au core-shell nanoparticles retain the optical properties of the silver core and are easily functionalized with thiolated oligonucleotides due to the presence of the gold shell. As such, the Ag/Au core-shell nanoparticles have optical properties different from their pure gold counterparts and provide another “color” option for target DNA-directed colorimetric detection. Size-matched Ag/Au core-shell and pure gold nanoparticles perform nearly identically in DNA detection and melting experiments, but with distinct optical signatures. Based on this observation, we report the development of a two-color-change method for the detection and simultaneous validation of single-nucleotide polymorphisms in a DNA target using Ag/Au core-shell and pure gold nanoparticle probes.     

Some aspects of quality assessment of the k0-based method of NAA

Neutron activation analysis is one of the analytical techniques often used for certification of reference materials. The k₀-based method of instrumental neutron activation analysis can also be applied in intercomparison runs in the certification process and therefore it is desirable to know its accuracy in advance. Possible systematic errors related to the application of nuclear data at given neutron flux rate parameters, that can affect the uncertainties of the results obtained by this specific method, are elucidated and error propagation factors calculated for a typical irradiation position in the TRIGA Mark II reactor of the Jozef Stefan Institute. It was found that these uncertainties are at the level of 1–2% on the average.     

Improving (Q)SAR predictions by examining bias in the selection of compounds for experimental testing

ABSTRACT

Existing data on structures and biological activities are limited and distributed unevenly across distinct molecular targets and chemical compounds. The question arises if these data represent an unbiased sample of the general population of chemical-biological interactions. To answer this question, we analyzed ChEMBL data for 87,583 molecules tested against 919 protein targets using supervised and unsupervised approaches. Hierarchical clustering of the Murcko frameworks generated using Chemistry Development Toolkit showed that the available data form a big diffuse cloud without apparent structure. In contrast hereto, PASS-based classifiers allowed prediction whether the compound had been tested against the particular molecular target, despite whether it was active or not. Thus, one may conclude that the selection of chemical compounds for testing against specific targets is biased, probably due to the influence of prior knowledge. We assessed the possibility to improve (Q)SAR predictions using this fact: PASS prediction of the interaction with the particular target for compounds predicted as tested against the target has significantly higher accuracy than for those predicted as untested (average ROC AUC are about 0.87 and 0.75, respectively). Thus, considering the existing bias in the data of the training set may increase the performance of virtual screening.     

Simultaneous operation of plural separation modes in capillary electrophoresis with a chemiluminescence detector possessing a micro-space area for reaction/detection

Analysis of alpha-amino acids, proteins, and phenolic compounds was simultaneously performed using three capillaries in capillary electrophoresis with chemiluminescence detection, taking advantage of the micro-space area for reaction/detection at the tip of the capillary. The three capillaries included usual, polymer-containing, and sodium docley sulfate (SDS)-containing migration buffers for separation. The eluted samples from the capillaries, which were inserted into the chemiluminescence detection cell, were mixed with chemiluminescence reagent at the tips of the capillaries to generate visible light. The specific micro-space area for reaction/detection at the tips of the capillaries enabled the simultaneous operation of the three separation modes in the present system.     

Dynamics of gel isoelectric focusing with ampholytic dyes monitored by camera in real-time

The dynamics of gel isoelectric focusing were studied by using amphoteric low-molecular-mass colored substances (isoelectric point markers). The polyacrylamide gel in slab format was in direct contact with the electrodes. In addition to isoelectric focusing with a pH gradient composed of synthetic carrier ampholytes, pH gradients created by simple buffers of acetic acid, 2-(N-morpholino)ethanesulfonic acid, histidine and N,N,N',N'-tetramethylethylenediamine were applied. The progress of the electrofocusing process was monitored by a charge-coupled device camera and video recording. The gradient profile and dynamics were approximated from the positions of isoelectric point markers, which were focused both on boundaries between individual zones of simple buffers and within the zones themselves. The obtained animated records enabled the observation of the entire real focusing run within fractions of a minute, which is useful both for the understanding and optimization of the focusing.     

Electrochemical Detection of Protons Produced in an Electrode Reaction Using Interdigitated Microarray Electrodes

This work describes the use of interdigitated array electrodes (IDAE) for proton detection. Methanol electrooxidation in sulfuric acid solution was exemplified. Reduction currents originating in the reaction product generated by methanol electrooxidation on a Pt generator electrode were observed at the Pt collector electrode, the potential of which was fixed in the hydrogen evolution region. In order to reduce the background current of hydrogen evolution, an Hg‐plated Pt collector electrode was fabricated. Compared to the Pt collector electrode, the reduction current observed at the Hg collector electrode was extremely small. The product detected was found to be a proton from the current responses observed at Pt and Hg collector electrodes.     

Linear stability of WENO schemes coupled with explicit Runge–Kutta schemes

This paper focuses on the results of the linear stability analysis of the finite‐difference weighted essentially non‐oscillatory (WENO) schemes with optimal weights. The standard WENO schemes between the third and 11th order, the order‐optimised WENO schemes of the sixth and eighth order and the bandwidth‐optimised WENO schemes of the third and fourth order are considered. Several explicit Runge–Kutta schemes including the recently published strong stability‐preserving explicit Runge–Kutta schemes are considered for time discretisation. The stability limits as well as dissipation and dispersion properties dependent on the Courant–Friedrichs–Lewy number are presented for a hyperbolic model equation. The different combinations of space and time discretisation schemes are compared in terms of their accuracy and efficiency. For a parabolic model equation, the viscous term is discretised with high‐order central differences. The stability limits for the parabolic problem are presented as well. Numerical results of linear test cases are shown. Copyright © 2011 John Wiley & Sons, Ltd.