An Algorithm Framework for Drug-Induced Liver Injury Prediction Based on Genetic Algorithm and Ensemble Learning

In the process of drug discovery, drug-induced liver injury (DILI) is still an active research field and is one of the most common and important issues in toxicity evaluation research. It directly leads to the high wear attrition of the drug. At present, there are a variety of computer algorithms based on molecular representations to predict DILI. It is found that a single molecular representation method is insufficient to complete the task of toxicity prediction, and multiple molecular fingerprint fusion methods have been used as model input. In order to solve the problem of high dimensional and unbalanced DILI prediction data, this paper integrates existing datasets and designs a new algorithm framework, Rotation-Ensemble-GA (R-E-GA). The main idea is to find a feature subset with better predictive performance after rotating the fusion vector of high-dimensional molecular representation in the feature space. Then, an Adaboost-type ensemble learning method is integrated into R-E-GA to improve the prediction accuracy. The experimental results show that the performance of R-E-GA is better than other state-of-art algorithms including ensemble learning-based and graph neural network-based methods. Through five-fold cross-validation, the R-E-GA obtains an ACC of 0.77, an F1 score of 0.769, and an AUC of 0.842.     

遗传算法优化变分模态分解提取舰船辐射噪声特征线谱方法

特征线谱提取是舰船目标识别的一个重要研究环节,常采用传统的DEMON谱分析方法,处理过程中,一般对舰船噪声时域信号未予抑噪,低信噪比情况下,传统DEMON谱分析性能差。对此,提出一种采用遗传算法优化变分模态分解方法,用于分解舰船噪声原时域信号,获得抑制噪声后的舰船噪声重构信号,进而有效提取了舰船目标噪声幅度调制特征线谱。该方法首先采用遗传算法优化变分模态分解的两个关键输入参数(分解所取模态个数和惩罚因子),对变分模态分解得到的各阶固有模态分量加以判别,去除噪声主导分量,保留信号主导分量,使重构舰船噪声信号显著抑制了干扰噪声,然后对降噪后的重构信号进行频谱分析,获得目标噪声调制特征线谱。理论分析、仿真和实验数据处理结果表明,相比传统DEMON谱分析法,基于遗传算法优化变分模态分解的舰船噪声特征线谱提取方法具有更好的噪声抑制能力,所获取的舰船噪声幅度调制特征线谱信噪比明显高于传统DEMON方法,具有一定优势,前景良好。     

Phase Transitions Induced by Top-Priority of Randomization

We study the characteristics of phase transition to take the top-priority of randomization in the rules of NaSch model (i.e.noise-first model) into account via computing the relaxation time and the order parameter.The scaling exponents of the relaxation time and the scaling relation of order parameter,respectively,axe obtained.     

The Classification of Rice Blast Resistant Seed Based on Ranman Spectroscopy and SVM

Rice blast is a serious threat to rice yield. Breeding disease-resistant varieties is one of the most economical and effective ways to prevent damage from rice blast. The traditional identification of resistant rice seeds has some shortcoming, such as long possession time, high cost and complex operation. The purpose of this study was to develop an optimal prediction model for determining resistant rice seeds using Ranman spectroscopy. First, the support vector machine (SVM), BP neural network (BP) and probabilistic neural network (PNN) models were initially established on the original spectral data. Second, due to the recognition accuracy of the Raw-SVM model, the running time was fast. The support vector machine model was selected for optimization, and four improved support vector machine models (ABC-SVM (artificial bee colony algorithm, ABC), IABC-SVM (improving the artificial bee colony algorithm, IABC), GSA-SVM (gravity search algorithm, GSA) and GWO-SVM (gray wolf algorithm, GWO)) were used to identify resistant rice seeds. The difference in modeling accuracy and running time between the improved support vector machine model established in feature wavelengths and full wavelengths (200–3202 cm⁻¹) was compared. Finally, five spectral preproccessing algorithms, Savitzky–Golay 1-Der (SGD), Savitzky–Golay Smoothing (SGS), baseline (Base), multivariate scatter correction (MSC) and standard normal variable (SNV), were used to preprocess the original spectra. The random forest algorithm (RF) was used to extract the characteristic wavelengths. After different spectral preproccessing algorithms and the RF feature extraction, the improved support vector machine models were established. The results show that the recognition accuracy of the optimal IABC-SVM model based on the original data was 71%. Among the five spectral preproccessing algorithms, the SNV algorithm’s accuracy was the best. The accuracy of the test set in the IABC-SVM model was 100%, and the running time was 13 s. After SNV algorithms and the RF feature extraction, the classification accuracy of the IABC-SVM model did not decrease, and the running time was shortened to 9 s. This demonstrates the feasibility and effectiveness of IABC in SVM parameter optimization, with higher prediction accuracy and better stability. Therefore, the improved support vector machine model based on Ranman spectroscopy can be applied to the fast and non-destructive identification of resistant rice seeds.     

免疫算法在双闭环直流调速系统中的应用

文中对双闭环直流调速系统控制器的选择进行了分析,并借鉴免疫算法强大的寻优能力,提出了基于免疫算法的调速系统控制器参数整定方法.为了分析比较,实际应用中采用了三种控制器参数整定方法,比较结果说明,免疫算法在调速系统控制器参数整定中的应用是更加有效的.通过在单晶炉拉晶过程的应用,证明该方法可行性和正确性.     

EGFAFS: A Novel Feature Selection Algorithm Based on Explosion Gravitation Field Algorithm

Feature selection (FS) is a vital step in data mining and machine learning, especially for analyzing the data in high-dimensional feature space. Gene expression data usually consist of a few samples characterized by high-dimensional feature space. As a result, they are not suitable to be processed by simple methods, such as the filter-based method. In this study, we propose a novel feature selection algorithm based on the Explosion Gravitation Field Algorithm, called EGFAFS. To reduce the dimensions of the feature space to acceptable dimensions, we constructed a recommended feature pool by a series of Random Forests based on the Gini index. Furthermore, by paying more attention to the features in the recommended feature pool, we can find the best subset more efficiently. To verify the performance of EGFAFS for FS, we tested EGFAFS on eight gene expression datasets compared with four heuristic-based FS methods (GA, PSO, SA, and DE) and four other FS methods (Boruta, HSICLasso, DNN-FS, and EGSG). The results show that EGFAFS has better performance for FS on gene expression data in terms of evaluation metrics, having more than the other eight FS algorithms. The genes selected by EGFAGS play an essential role in the differential co-expression network and some biological functions further demonstrate the success of EGFAFS for solving FS problems on gene expression data.     

Water Status and Predictive Models of Moisture Content during Drying of Soybean Dregs Based on LF-NMR

To explore the drying characteristics of soybean dregs and a nondestructive moisture content test method, in this study, soybean dregs were dried with hot air (80 °C), the moisture content was measured using the drying method, water status was analyzed using low-field nuclear magnetic resonance (LF-NMR) and the moisture content prediction models were built and validated. The results revealed that the moisture contents of the soybean dregs were 0.57 and 0.01 g/g(w.b.), respectively, after drying for 5 and 7 h. The effective moisture diffusivity increased with the decrease in moisture content; it ranged from 5.27 × 10⁻⁹ to 6.96 × 10⁻⁸ m²·s⁻¹. Soybean dregs contained bound water (T₂₁), immobilized water (T₂₂) and free water (T₂₃ and T₂₃’). With the proceeding of drying, all of the relaxation peaks shifted left until a new peak (T₂₃’) appeared; then, the structure of soybean dregs changed, and the relaxation peaks reformed, and the peak shifted left again. The peak area may predict the moisture content of soybean dregs, and the gray values of images predict the moisture contents mainly composed of free water or immobilized water. The results may provide a reference for drying of soybean dregs and a new moisture detection method.     

一种求解混合整数非线性规划问题的演化算法--搜索空间自动收缩法

提出一种求解混合整数非线性规划问题的新的演化算法 -搜索空间自动收缩法 (ACSSOS) .在这种算法中 ,演化算法既用来定位最优解区域 ,实现搜索空间自动向全局最优解收缩 ,又用来最终求得最优解 .由于在遗传算子中引用了舍入操作 ,它不仅可用来求解混合非线性整数规划问题 ,也可求解纯整型或纯实型变量非线性函数优化问题 .数值试验结果表明本文的算法在解的质量、稳定性和收敛速度等方面优于一般的演化算法 .     

高阶常微分方程的动态演化建模

提出了采用高阶常微分方程模型代替传统时序分析中所用的ARMA模型来实现一维时间序列的建模和预报．设计的将遗传程序设计与遗传算法相嵌套的动态演化建模算法,用遗传程序设计优化模型结构,以遗传算法优化模型参数,边收集数据边建模边预报,首次成功地实现了时间序列实时预报的程序自动化．两个时间序列的应用实例表明采用此算法可获得较好的实时预报效果．     

辐射在CH泡沫中传输的数值模拟

利用一维多群辐射输运程序对辐射在CH泡沫中的传输过程进行了数值模拟,给出一些细致的物理图像和定量结果。在一定的入射辐射流条件下,密度变化对辐射传输特征、辐射加热介质的热力学平衡弛豫过程有重要影响。随着密度下降,辐射由亚声速传输转变为超声速传输,辐射在传输过程中的能谱形状也不同。