Hydration scheme of uracil and cytosine

The comparison of a pure electrostatic approximation and complete supermolecule SCF ab initio computations on the hydration scheme of uracil and cytosine shows that the electrostatic procedure is capable to reproduce the general aspects of the results of the supermolecule treatment provided that different distances of shortest approach be adopted for the distances between the oxygen of water and the nitrogen of NH₂ or NH groups or the oxygen of C-O groups on the one hand and the oxygen of water and pyridine-type nitrogens on the other hand.     

Complete solutions of a family of quartic Thue and index form equations

Continuing the recent work of the second author, we prove that the diophantine equation

for has exactly 12 solutions except when , when it has 16 solutions. If denotes one of the zeros of , then for we also find all with .

     

Heuristic methods for evolutionary computation techniques

Evolutionary computation techniques, which are based on a powerful principle of evolution—survival of the fittest, constitute an interesting category of heuristic search. In other words, evolutionary techniques are stochastic algorithms whose search methods model some natural phenomena: genetic inheritance and Darwinian strife for survival.Any evolutionary algorithm applied to a particular problem must address the issue of genetic representation of solutions to the problem and genetic operators that would alter the genetic composition of offspring during the reproduction process. However, additional heuristics should be incorporated in the algorithm as well; some of these heuristic rules provide guidelines for evaluating (feasible and infeasible) individuals in the population. This paper surveys such heuristics and discusses their merits and drawbacks.An abridged version of this paper appears in the volume entitled META-HEURISTICS: Theory & Application, edited by Ibrahim H. Osman and James P. Kelly, to be published by Kluwer Academic Publishers in March 1996.     

C 1 surface interpolation with constraints

Givenn pairwise distinct and arbitrarily spaced pointsP _i in a domainD of thex–y plane andn real numbersf _i, consider the problem of computing a bivariate functionf(x, y) of classC ¹ inD whose values inP _i are exactlyf _i,i=1,,n, and whose first or second order partial derivatives satisfy appropriate equality and inequality constraints on a given set ofp pointsQ _l inD.In this paper we present a method for solving the above problem, which is designed for extremely large data sets. A step of this method requires the solution of a large scale quadratic programming (QP) problem.The main purpose of this work is to analyse an iterative method for determining the solution of this QP problem: such a method is very efficient and well suited for parallel implementation on a multiprocessor system.Work supported by MURST Project of Computational Mathematics, Italy.     

Polarographic study of Tl+, Li+, Na+, K+, and Cs+ complexes with monensin anion in dipolar aprotic solvents

Summary The stability constants,K _sof monensin complexes with Li⁺, Na⁺, K⁺ and Cs⁺ ions were studied by a competitive polarographic method using the Tl⁺/Tl(Hg) redox couple as a sensitive electrochemical probe. TheK _svalues are strongly influenced by the solvents (acetonitrile, propionitrile, acetone, N,N-dimethylformamide, N-methyl pyrolidinone, N,N-dimethylacetamide, dimethylsulfoxide, N,N-diethylformamide and N,N-diethylacetamide were used in experiments) and vary inversely with the Gutmann donicity scale. Molecular mechanics computations revealed the probable structures of the complexes.

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Polarographische Untersuchung von Tl⁺-, Li⁺-, Na⁺- und Cs⁺-Komplexen mit Monesin-Anion in dipolaren aprotischen Lösungsmitteln

Zusammenfassung Es wurden die StabilitätskonstantenK _svon Monesin-Komplexen mit Li⁺-, Ma⁺- und Cs⁺-Ionen mittels einer competitiven polarographischen Methode unter Verwendung der Tl⁺/Tl(Hg)-Redoxelektrode als sensitiver elektrochemischer Sonde bestimmt. DieK _s-Werte werden stark vom Lösungsmittel (Acetonitril, Propionitril, Aceton, N,N-Dimethylformamid, N-Methylpyrrolidinon, N,N-Dimethylacetamid, Dimethylsulfoxid, N,N-Diethylformamid und N,N-Diethylacetamid) beeinflußt, wobei sie invers zurGutmann schen Donizitätsskala variieren. Die wahrscheinliche Struktur der Komplexe wurde mittels molekularmechanischer Berechnungen ermittelt.

     

A Robust and Efficient Method for the Computation of Equilibrium Composition in Gaseous Mixtures

This paper presents in detail a robust, efficient and accurate methodology for the computation of equilibrium composition in gaseous mixtures. The methodology is founded on the concept of the chemical basis, which is defined and formalized using a powerful matricial approach. The method is specially designed to be general, thus providing basic thermodynamic data in several areas, such as combustion, plasma chemistry and, more generally speaking, computational fluid dynamics. The performance of the method is given in terms of CPU usage and the computed results are compared with those in the published literature. The method is shown to yield results of very high quality in terms of accuracy and smoothness.     

线粒体和亚线粒体体外代谢及漆酶影响的微量热研究

首次将微量热用于亚细胞层次的研究，测定了鲤鱼肝脏线粒体和亚线粒体代谢的热谱及其漆树漆酶的影响，并用ＭＴＤ方程和演化计算技术对它们的代谢热动力学参数进行了全局优化。     

Synthesis and Asymmetric Enantioselective Addition of Chiral Polybinaphthyl and Polybinaphthol I.igands

Four chiral polymers P-1, P-2, P-3 and P-4 were synthesized by the polymerization of （S）-2,2＇-dioctoxy-1,1＇- binaphthyl-6,6＇-boronic acid （S-M-3） with （S）-6,6＇-dibromo-1,1＇-binaphthol （S-M-1）, （R）-6,6＇-dibromo-1,1＇- binaphthol （R-M-1）, （S）-3,3＇-diiodo-1,1＇-binaphthol （S-M-2） and （R）-3,3＇-diiodo-1,1＇-binaphthol （R-M-2） under Pd-catalyzed Suzuki reaction, respectively. All four polymers can show good solubility in some common solvents due to the nonplanarity of the polymers in the main chain backbone and flexible alkyl groups in the side chain. The analysis results indicate that specific rotation and circular dichroism （CD） spectral signals of the alternative S-S chiral polymers P-1 and P-3 are larger than those of S-R chiral polymers P-2 and P-4, but their UV-Vis and fluorescence spectra are almost similar. The results of asymmetric enantioselectivity of four polymers for diethylzinc addition to benzaldehyde indicate that catalytically active center is （R） or （S）-1, 1＇-binaphthol moieties.     

Synthesis and Electrospray Ionization Mass Spectra of N-（1,3, 2-Dioxaphosphorinan-2-ylmethyl）thiophosphoramidates

N-（1,3,2-Dioxaphosphorinan-2-ylmethyl）thiophosphoramidates were synthesized and determined by NMR spectra and positive ion electrospray ionization mass spectrometry （ESI-MS） in conjunction with tandem mass spectrometry （MS/MS）. The fragmentation pathways were investigated. The results show that these characteristic ions in ESI mass spectra are useful in the structural determination of N-（1,3,2-dioxaphosphorinan-2-ylmethyl）- thiophosphoramidates.     

GROMACS: fast, flexible, and free

This article describes the software suite GROMACS (Groningen MAchine for Chemical Simulation) that was developed at the University of Groningen, The Netherlands, in the early 1990s. The software, written in ANSI C, originates from a parallel hardware project, and is well suited for parallelization on processor clusters. By careful optimization of neighbor searching and of inner loop performance, GROMACS is a very fast program for molecular dynamics simulation. It does not have a force field of its own, but is compatible with GROMOS, OPLS, AMBER, and ENCAD force fields. In addition, it can handle polarizable shell models and flexible constraints. The program is versatile, as force routines can be added by the user, tabulated functions can be specified, and analyses can be easily customized. Nonequilibrium dynamics and free energy determinations are incorporated. Interfaces with popular quantum-chemical packages (MOPAC, GAMES-UK, GAUSSIAN) are provided to perform mixed MM/QM simulations. The package includes about 100 utility and analysis programs. GROMACS is in the public domain and distributed (with source code and documentation) under the GNU General Public License. It is maintained by a group of developers from the Universities of Groningen, Uppsala, and Stockholm, and the Max Planck Institute for Polymer Research in Mainz. Its Web site is http://www.gromacs.org.