Mildred Dresselhaus and Solid State Pedagogy at MIT

Mildred Dresselhaus is known for her influential research on the physics of carbon. Her wide‐ranging influence as a physics teacher, although well‐known to her students, has been less thoroughly examined. Exploring how Dresselhaus grew into her role teaching solid state physics at MIT reveals much about how that subfield evolved.     

每课一题教学环节的研究与实践

利用“每课一题”这个教学环节从已有知识中提取基本原理，并应用于新知识的学习；提取学生的问题编制习题，让学生暴露产生问题的根源并从根本上解决。探讨了每课一题的必要性及其基本类型。     

数学建模思想渗入大学数学课堂教学的试验研究

以高等数学课堂教学为例,通过科学试验的方法分析数学建模思想渗入大学数学课堂教学对学生学习的影响力。通过精心设计教学试验,采集大量试验数据进行建模分析,结果表明,数学建模思想渗入高等数学课堂教学会对学生的学习产生积极影响,值得推广并长期坚持。     

Continuous development of schemes for parallel computing of the electrostatics in biological systems: Implementation in DelPhi

Due to the enormous importance of electrostatics in molecular biology, calculating the electrostatic potential and corresponding energies has become a standard computational approach for the study of biomolecules and nano‐objects immersed in water and salt phase or other media. However, the electrostatics of large macromolecules and macromolecular complexes, including nano‐objects, may not be obtainable via explicit methods and even the standard continuum electrostatics methods may not be applicable due to high computational time and memory requirements. Here, we report further development of the parallelization scheme reported in our previous work (Li, et al., J. Comput. Chem. 2012, 33, 1960) to include parallelization of the molecular surface and energy calculations components of the algorithm. The parallelization scheme utilizes different approaches such as space domain parallelization, algorithmic parallelization, multithreading, and task scheduling, depending on the quantity being calculated. This allows for efficient use of the computing resources of the corresponding computer cluster. The parallelization scheme is implemented in the popular software DelPhi and results in speedup of several folds. As a demonstration of the efficiency and capability of this methodology, the electrostatic potential, and electric field distributions are calculated for the bovine mitochondrial supercomplex illustrating their complex topology, which cannot be obtained by modeling the supercomplex components alone. © 2013 Wiley Periodicals, Inc.     

VinaMPI: Facilitating multiple receptor high‐throughput virtual docking on high‐performance computers

The program VinaMPI has been developed to enable massively large virtual drug screens on leadership‐class computing resources, using a large number of cores to decrease the time‐to‐completion of the screen. VinaMPI is a massively parallel Message Passing Interface (MPI) program based on the multithreaded virtual docking program AutodockVina, and is used to distribute tasks while multithreading is used to speed‐up individual docking tasks. VinaMPI uses a distribution scheme in which tasks are evenly distributed to the workers based on the complexity of each task, as defined by the number of rotatable bonds in each chemical compound investigated. VinaMPI efficiently handles multiple proteins in a ligand screen, allowing for high‐throughput inverse docking that presents new opportunities for improving the efficiency of the drug discovery pipeline. VinaMPI successfully ran on 84,672 cores with a continual decrease in job completion time with increasing core count. The ratio of the number of tasks in a screening to the number of workers should be at least around 100 in order to have a good load balance and an optimal job completion time. The code is freely available and downloadable. Instructions for downloading and using the code are provided in the Supporting Information. © 2013 Wiley Periodicals, Inc.     

PHI: A powerful new program for the analysis of anisotropic monomeric and exchange‐coupled polynuclear d‐ and f‐block complexes

A new program, PHI, with the ability to calculate the magnetic properties of large spin systems and complex orbitally degenerate systems, such as clusters of d‐block and f‐block ions, is presented. The program can intuitively fit experimental data from multiple sources, such as magnetic and spectroscopic data, simultaneously. PHI is extensively parallelized and can operate under the symmetric multiprocessing, single process multiple data, or GPU paradigms using a threaded, MPI or GPU model, respectively. For a given problem PHI is been shown to be almost 12 times faster than the well‐known program MAGPACK, limited only by available hardware. © 2013 Wiley Periodicals, Inc.     

文化框架下多群智能优化算法的云作业调度

作业调度是一种云计算核心技术,为了获得更优的云计算作业调度方案,提出一种文化框架下多群智能优化算法的云作业调度方法。首先构建云作业调度问题的数学模型,然后借助文化算法模型,粒子群算法组成信仰空间,人工鱼群算法组成群体空间,两者之间并行演化,相互促进,对云计算作业调度数学模型进行求解,最后通过仿真实验测试算法的性能。结果表明,本文加快了算法的收敛速度,获得了更优的云计算作业调度方案,大幅度缩短少云计算作业完成时间,具有一定的实用价值。     

大学有机化学“五维度”教学新策略——以“芳烃的亲电取代和亲核取代反应”为例

介绍了大学有机化学“强理念、重思维、活课堂、共育人、乐钻研”五维度教学新策略的内涵与实践。以线下教学为主,腾讯会议和慕课为辅助,践行“有机化学是科学也是艺术”的教学理念;采用多循环“疑探式”教学方式,辨析亲电试剂和亲核试剂的多样性;注重培养学生多种科学思维的综合运用;强化“文献预习”“练习讲解”“综合作业”“师生互动”等多个教学环节,加深学生对知识的理解与应用,提升学生在课堂中的参与度,着重培养学生的科学思维和人文素养、自主学习与团队合作精神。