基于SVR和k-近邻群的组合预测在QSAR中的应用

为提高定量构效关系(QSAR)研究的预测精度,发展了一种新的基于支持向量机回归(SVR)非线性筛选分子结构描述符、基于k-近邻群的非线性组合预测方法.首先以均方误差(MSE)最小为原则,以留一法通过多轮末尾淘汰实施分子结构描述符的非线性SVR汰选并给出最优核函数和相应保留描述符;其次基于待测样本与训练样本保留描述符向量的欧氏距离,以不同k-近邻群子模型双重留一法预测值反映样本集的异质性;然后基于MSE最小,以留一法通过多轮末尾淘汰实施近邻群子模型的非线性SVR汰选并给出最优核函数和相应保留子模型;最后基于保留子模型以双重留一法实施组合预测.以取代苯胺和苯酚类化合物对大型溞的QSAR实例验证表明:新方法在所有参比模型中预测精度最高,且能更精细地反映描述符与化合物毒性间的非线性关系,具结构风险最小、非线性、适于小样本,能有效克服过拟合、维数灾和局极小,非线性筛选描述符和子模型,非线性组合预测,自动选择最优核函数及其相应参数,泛化推广能力优异、预测精度高等诸多优点,在QSAR研究中有广泛应用前景.     

meso-meso-Linked corrole dimers with modified cores: synthesis, characterization, and properties

The synthesis and characterization of the first examples of core-modified corrole dimers linked through the meso positions are described. The dimers are obtained by a simple Ag(I)- or Fe(III)-catalyzed coupling reaction in near-quantitative yields. The corroles obtained are metalated with metal ions, such as Cu(II) and Ni(II). The electronic-absorption spectral studies reveal weak electronic interaction between the two subunits and the exciton coupling observed for the free-base corrole dimer (1717 cm(-1)) is lower than that for the corresponding protonated derivative (4081 cm(-1)). The solution-state structure derived from (1)H and two-dimensional NMR spectral studies reveals a noncoplanar arrangement of two corrole units. Geometry optimization at the B3LYP-631G level also confirms the noncoplanar arrangement of corroles with a dihedral angle of 64.8 degrees between two corrole planes. The electron paramagnetic resonance (EPR) and magnetic characterization studies on the paramagnetic copper-metalated dimer indicate that both copper ions behave as independent spins without any noticeable interaction. Results of fluorescence studies reveal a bathochromic shift of about 60 nm upon dimerization. The first hyperpolarizability (beta) measured by using the hyper Rayleigh scattering (HRS) method reveals doubling of the beta values on progressing from monomer to dimer, attributed to enhanced pi conjugation. The use of copper dimers in the photocleavage of DNA is also explored. It is shown that the bimetallic copper dimer selectively cleaves the nucleic acids without affecting the proteins, suggesting a possible application of the copper complex in the removal of nucleic acid contaminants from protein extracts through a simple photolytic pathway.     

Synthesis, fluorescence, and two-photon absorption of a series of elongated rodlike and banana-shaped quadrupolar fluorophores: a comprehensive study of structure-property relationships

An extensive series of push-push and pull-pull derivatives was prepared from the symmetrical functionalization of an ambivalent core with conjugated rods made from arylene-vinylene or arylene-ethynylene building blocks, bearing different acceptor or donor end-groups. Their absorption and photoluminescence, as well as their two-photon-absorption (TPA) properties in the near infrared (NIR) region, were systematically investigated to derive structure-property relationships and to lay the guidelines for both spectral tuning and amplification of molecular TPA in the target region. Whatever the nature of the core or of the connectors, push-push systems were found to be more efficient than pull-pull systems, and planarization of the core (fluorene versus biphenyl) always leads to an increase in the TPA cross sections. In contrast, increasing the conjugation length as well as replacement of a phenylene moiety by a thienylene moiety in the conjugated rods did not necessarily lead to increased TPA responses. The present study also demonstrated that the topology of the conjugated rods can dramatically influence the TPA properties. This is of particular interest in terms of molecular engineering for specific applications, as both TPA properties and photoluminescence characteristics can be considerably affected. Thus, it becomes possible to optimize the transparency/TPA and fluorescence/TPA efficiency trade-offs for optical limiting in the red-NIR region (700-900 nm) and for two-photon-excited fluorescence (TPEF) microscopy applications, respectively.     

Synthesis, Structure and Secondorder Nonlinear Optical Activities of a New Tungsten（0） Compound with Pyridine-2-thiolato Ligand, [Et4N][W（pyS）（CO）4] （pys = C5H4NS^-）

The reaction of W(CO)6 with pyOSNa (C5-H4NOSNa) and Et4NCl in MeCN affords a new tungsten(0) complex [Et4N][W(pyS)(CO)4] 1 (Mr.= 536.29).The crystal and molecular structures have been determined by X-ray single-crystal diffraction.Complex 1 crystallizes in the orthorhombic system,space group P212121 with a = 8.2429(5),b = 9.1045(4),c =26.8851(14) (A),β = 90.00°,V= 2017.66(18) (A)3,Z = 4,Dc.= 1.765 g/cm3,μ = 58.51 cm-1,F(000) =1048,the final R = 0.0204 and wR = 0.0400 for 4432 observed reflections with I ＞ 2σ(I).X-ray structure analysis revealed that the molecule is acentric and has large first-order hyperpolarizability (7.2 × 10-30 esu),so it could be an IR second-order nonlinear optical candidate material.     

苯并[b]萘并[2'''',3'''':5,6][1,4]二噻英并[2,3-i]噻蒽-5,7,9,14,16,18-六酮的合成及其三阶非线性光学性能

以1,4-萘醌为原料,合成了含硫的醌构稠杂环化合物苯并[b]萘并[2',3':5,6][1,4]二噻英并[2,3-i]噻蒽-5,7,9,14,16,18-六酮(4),其结构经1H NMR和IR确证.采用波长为800 nm,脉宽为80 fs的Ti:Sapphire飞秒激光,运用双光束简并四波混频法测定了4的三阶非线性光学性能,结果表明,4的三阶非线性光学极化率χ(3),非线性折射率n2,分子二阶超极化率γ和响应时间分别为2.89×10-13 esu, 5.31×10-12 esu, 3.14×10-31 esu和101 fs.并分析了4的分子结构对其三阶非线性光学性能的影响.     

The W algorithm and the D transformation for the numerical evaluation of three‐center nuclear attraction integrals

Three‐center nuclear attraction integrals over exponential‐type functions are required for ab initio molecular structure calculations and density functional theory (DFT). These integrals occur in many millions of terms, even for small molecules, and they require rapid and accurate numerical evaluation. The use of a basis set of B functions to represent atomic orbitals, combined with the Fourier transform method, led to the development of analytic expressions for these molecular integrals. Unfortunately, the numerical evaluation of the analytic expressions obtained turned out to be extremely difficult due to the presence of two‐dimensional integral representations, involving spherical Bessel integral functions. % The present work concerns the development of an extremely accurate and rapid algorithm for the numerical evaluation of these spherical Bessel integrals. This algorithm, which is based on the nonlinear D transformation and the W algorithm of Sidi, can be computed recursively, allowing the control of the degree of accuracy. Numerical analysis tests were performed to further improve the efficiency of our algorithm. The numerical results section demonstrates the efficiency of this new algorithm for the numerical evaluation of three‐center nuclear attraction integrals. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Theoretical Study of the Substituent Effects on the Nonlinear Optical Properties of a Room‐Temperature‐Stable Organic Electride

Excess‐electron compounds can be considered as novel candidates for nonlinear optical (NLO) materials because of their large static first hyperpolarizabilities (β₀). A room‐temperature‐stable, excess‐electron compound, that is, the organic electride Na@(TriPip222), was successfully synthesized by the Dye group (J. Am. Chem. Soc. 2005 , 127, 12416). In this work, the β₀ of this electride was first evaluated to be 1.13×10⁶ au, which revealed its potential as a high‐performance NLO material. In particular, the substituent effects of different substituents on the structure, electride character, and NLO response of this electride were systemically studied for the first time by density functional theory calculations. The results revealed that the β₀ of Na@(TriPip222) could be further increased to 8.30×10⁶ au by introducing a fluoro substituent, whereas its NLO response completely disappeared if one nitryl group was introduced because the nitro‐group substitution deprived the material of its electride identity. Moreover, herein the dependence of the NLO properties on the number of substituents and their relative positions was also detected in multifluoro‐substituted Na@(TriPip222) compounds.     

Synthetic,Optical and Theoretical Study of Alternating Ethylenedioxythiophene–Pyridine Oligomers: Evolution from Planar Conjugated to Helicoidal Structure towards a Chiral Configuration

A series of alternating 3,4‐ethylenedioxythiophene–alkynylpyridine oligomers (DA)_n with increased solubility are synthesized and their photophysical properties and nonlinear optical properties are investigated. Their quadratic polarizabilities are determined from hyper‐Rayleigh scattering experiments to obtain information on their conformations in solution. These chromophores, based on the alternation of electron‐rich (D) and electron‐deficient (A) moieties, exhibit optical properties that arise from the combination of dipolar and helicoidal features in the (DA)_n homologue series where n=1–4. The transition from dipolar conjugated planar structures (n=1, 2) to helicoidal structures (n=3, 4) is clearly evidenced by results from symmetry‐sensitive second‐order nonlinear optical experiments. This suggests an approach towards highly efficient chiral chromophores for second‐order nonlinear optics. Interestingly, this structural evolution also has significant impact on the photophysical properties: both absorption and fluorescence emission show bathochromic and hyperchromic shifts with increasing number of repeating units in the dipolar planar derivatives (n=1–2) but show saturation effects in the helicoidal structures (n=2–4). In addition, the helicoidal structures show sizeable two‐photon absorption at 700–750 nm (40–100 GM) for compounds lacking either electron‐donating or electron‐withdrawing substituents.     

芳香查尔酮衍生物的合成、理论计算及三阶非线性光学性质

合成了2种新的具有潜在应用价值的非线性光学(NLO)有机材料芳香查尔酮衍生物1-(呋喃-2-基)-3-(4-甲氧基苯基)丙烯酮(1)和1-(噻吩-2-基)-3-(4-甲氧基苯基)丙烯酮(2),并对其进行了NMR、IR和HR-MS结构表征。 采用4f相位相干成像技术测定了化合物1和2的三阶NLO性质并确定了相关参数:脉冲宽度4 nm,激光波长440 nm,化合物1:非线性吸收系数β=5.5×10^-10 m/W,非线性折射系数n₂=-2.1×10^-17 m²/W,三阶非线性极化率χ⁽³⁾=1.58×10^-11 esu;化合物2:β=-2.4×10^-10 m/W,n₂=0.3×10^-17 m²/W,χ⁽³⁾=0.50×10^-11 esu;并测定了紫外光谱和DSC曲线。 采用密度泛函方法计算了化合物1和2的轨道能量和极化率,结果表明电子转移能在分子内部进行,说明比较易于极化,展示了良好的非线性光学性质。     

基于二茂铁的两个查尔酮衍生物的合成及超快三阶非线性光学响应

二茂铁是合成新颖有机功能材料的基本单元之一。 本文设计并合成了两个基于二茂铁的同分异构查尔酮衍生物:1-二茂铁基-3-(噻吩-2-基)丙烯酮(a)和1-二茂铁基-3-(噻吩-3-基)丙烯酮(b)。 采用超快激光Z-扫描技术(脉宽180 fs,波长532 nm)测定了化合物a和b的三阶非线性光学性质。 结果表明,化合物a吸收系数β=-2.1×10^-12 m/W,折射率n₂=1.9×10^-19 m²/W,分子超极化率γ=5.37×10^-32 esu;化合物b:β=-1.2×10^-13 m/W,n₂=2.0×10^-19 m²/W,γ=4.48×10^-32 esu。 说明在飞秒激光激发下,电荷转移能够在化合物a和b分子内部快速进行,二者均具有优异的超快三阶非线性光学响应。 在B3LYP/6-311+G(d,p)理论水平下,计算了化合物a和b分子轨道能量、极化率和各基团在前线分子轨道中的占有率。 理论计算结果显示,二茂铁基团在化合物a和b前线分子轨道中占有率分别为97%和98%,对两化合物的非线性光学性能起主导作用。