Basis set effects on the stability of the Cl2O3 isomers using B3P86 and B3LYP methods of density functional theory

Four Cl₂O₃ isomers have been calculated using density functional theory with B3P86 and B3LYP functionals and various basis sets. The energy hypersurfaces of Cl₂O₃ are very flat and the relative energies of the isomers which have hypervalent characters such as ClOCl(O)O and ClClO₃ are strongly dependent on the basis sets. The stability for Cl₂O₃ isomers are in the order of (1)ClOOOCl(C_s), (2)ClOOOCl(C₂), (3)ClClO₃ and (4)ClOCl(O)O with ClOCl(O)O being most stable. We suggest that at least the cc-pV6Z(-ghi) basis set for Cl and the cc-pVTZ basis set for O are required to obtain reliable relative stabilities of Cl₂O₃ isomers with hypervalent characters.     

Electron-density-dependent fused-sphere surfaces derived from pseudopotential calculations

Fused-sphere surfaces can be used to mimic a molecular boundary associated with a constant value of the electron density. The simplest of such fused-sphere models are constructed by using the atomic radii for the spherical isodensity surfaces of individual atoms. In this work, we discuss the extension of this model to molecules containing atoms beyond the second row. In these many- electron systems, the computation of electron densities is usually simplified by adopting a pseudopotential (or effective-core potential) approach. Here, we discuss the performance of large- and small-core pseudo-potential calculations as a tool to derive atomic radii. Our results provide an optimum set of variable radii that can be used to build fused-sphere surfaces. This continuum of surfaces provides a simple approximation to the low-electron-density regions around molecules with heavy atoms.     

Transition State and Catastrophe Set

The study on transition states is one of the most important pathways to understand the essence of chemical reactions. With the development of femtoseeond pulse technique, Zewail et al. have carried out a number of experimental studies on the transition states, while the theoretical chemists has a great interest in the topic. In the previous     

A B3LYP study on counterpoise-corrected geometry optimizations for hydrated complexes of [K(H2O)n] and [Na(H2O)n]

We report the basis set dependencies and the basis set superposition errors for the hydrated complexes of K⁺ and Na⁺ ions in relation to the recent studies of the KcsA potassium channel. The basis set superposition errors are estimated by the geometry optimizations at the counterpoise-corrected B3LYP level. The counterpoise optimizations alter the hydration distances by about 0.02–0.03 Å. The enthalpies and free energies for K⁺ + n(H₂O) → [K(H₂O)_n]⁺ and Na⁺ + n(H₂O) → [Na(H₂O)_n]⁺ (n = 1–6) are compared between the theoretical and experimental values. The results show that the addition of diffuse functions to K, Na, and O species are effective. However, it is also found that the counterpoise corrections using diffuse functions work so as to underestimate the free energies for the complexes with increasing the hydration number. The stabilization energies in aqueous solution are larger for a Na⁺ ion than for a K⁺ ion, suggesting the contributions of their dehydration processes to the ion selectivity of the KcsA potassium channel. The changes in coordination distance between the isolated [K(H₂O)₈]⁺ and the [K(H₂O)₈]⁺ in the KcsA potassium channel indicate the importance of hydrogen bondings between the first hydration shell and the outer hydration shells.     

Molecular Orbital Calculations on 2, 4, 6-Trinitrotoluene

Three ab initio calculations (HF/6-3IG, HF/6-3IG*, and HF/6-3IG**) on 2,4,6-trinitrotoluene were made, The results compare well with xray data, except dihedral angles of NO₂ relative to the plane of the benzene ring. The deviations are attributed to packing forces and steric effects in the crystal. The most stable structure was a torsional angle 10° of the methyl top with the benzene ring, unlike toluene. The rotational barriers of the methyl top and the 4-nitro group are small. Hydrogen bonding, dipole moments and total atomic charges arc calculated.     

NIR analysis of pharmaceutical samples without reference data: improving the calibration

Using an appropriate set of samples to construct the calibration set is crucial with a view to ensuring accurate multivariate calibration of NIR spectroscopic data. In this work, we developed and optimized a new methodology for incorporating physical variability in pharmaceutical production based on the NIR spectrum for the process. Such a spectrum contains the spectral changes caused by each treatment applied to the component mixture during the production process. The proposed methodology involves adding a set of process spectra (viz. difference spectra between those for production tablets and a laboratory mixture of identical nominal composition) to the set of laboratory samples, which span the wanted concentration range, in order to construct a calibration set incorporating all physical changes undergone by the samples in each step of the production process. The best calibration model among those tested was selected by establishing the influence of spectral pretreatments used to obtain the process spectrum and construct the calibration models, and also by determining the multiplying factor m to be applied to the process spectra in order to ensure incorporation of all variability sources into the calibration model. The specific samples to be included in the calibration set were selected by principal component analysis (PCA). To this end, the new methodology for constructing calibration sets for determining the Active Principle Ingredients (API) and excipients was applied to Irbesartan tablets and validated by application to the API and excipients of paracetamol tablets. The proposed methodology provides simple, robust calibration models for determining the different components of a pharmaceutical formulation.     

木犀草素与胞嘧啶相互作用的理论研究

采用密度泛函理论中的B3LYP方法,在6-31＋G＊基组水平上对木犀草素、胞嘧啶、木犀草素-胞嘧啶复合物进行结构优化和振动频率分析,得到了12种稳定复合物.并应用分子中的原子理论（AIM）分析、自然键轨道（NBO）理论分析得到复合物氢键性质和特征.通过基组重叠误差（BSSE）校正后的相互作用能、成键临界点电荷密度、二阶...     

Definition and detection of data-based uniqueness in evaluating bilinear (two-way) chemical measurements

Multivariate curve resolution methods, frequently used in analyzing bilinear data sets, result in ambiguous decomposition in general. Implementing the adequate constraints may lead to reduce the so-called rotational ambiguity drastically, and in the most favorable cases to the unique solution. However, in some special cases, non-negativity constraint as minimal information of the system is a sufficient condition to resolve profiles uniquely. Although, several studies on exploring the uniqueness of the bilinear non-negatively constrained multivariate curve resolution methods have been made in the literature, it has still remained a mysterious question. In 1995, Manne published his profile-based theorems giving the necessary and sufficient conditions of the unique resolution. In this study, a new term, i.e., data-based uniqueness is defined and investigated in details, and a general procedure is suggested for detection of uniquely recovered profile(s) on the basis of data set structure in the abstract space. Close inspection of Borgen plots of these data sets leads to realize the comprehensive information of local rank, and these argumentations furnish a basis for data-based uniqueness theorem. The reported phenomenon and its exploration is a new stage (it can be said fundament) in understanding and describing the bilinear (matrix-type) chemical data in general.     

血糖近红外光谱分析的Savitzky-Golay平滑模式与偏最小二乘法因子数的联合优选

利用偏最小二乘法(PLS)和光谱Savitzky-Golay(SG)平滑方法,建立血清葡萄糖近红外光谱分析的优化模型。基于最优单波数模型的预测效果,提出划分校正集和验证集的一种新方法。采用10000～5300cm-1和4920～4160cm-1的组合波段,光谱经过SG平滑处理,利用PLS方法建立定标预测模型。将平滑点数扩充为5,7,…,87(奇数),多项式次数扩充为n=2,3,4,5,6,得到包含582个平滑模式的14个平滑系数表。对所有平滑模式和PLS因子数(1～40)分别建立PLS模型。按照预测效果进行优选,得到最优SG平滑模式为1阶导数平滑,3、4次多项式类型,SG平滑点数为53,最优PLS因子数为7,最优RMSEP达到0.376mmol/L。所采用的划分校正集和验证集的方法、SG平滑模式的扩充、SG平滑模式和PLS因子数的联合大范围筛选能够有效地应用于近红外光谱分析的模型优化。     

DFT study on the intermolecular interactions between Aun (n = 2–4) and thymine

Density functional B3LYP method with 6-31++G** basis set is applied to optimize the geometries of the luteolin, water and luteolin–(H₂O)_n complexes. The vibrational frequencies are also studied at the same level to analyze these complexes. We obtained four steady luteolin–H₂O, nine steady luteolin–(H₂O)₂ and ten steady luteolin–(H₂O)₃, respectively. Theories of atoms in molecules (AIM) and natural bond orbital (NBO) are used to investigate the hydrogen bonds involved in all the systems. The interaction energies of all the complexes corrected by basis set superposition error, are within −13.7 to −82.5 kJ/mol. The strong hydrogen bonding mainly contribute to the interaction energies, Natural bond orbital analysis is performed to reveal the origin of the interaction. All calculations also indicate that there are strong hydrogen bonding interactions in luteolin–(H₂O)_n complexes. The OH stretching modes of complexes are red-shifted relative to those of the monomer.