Application of computer algebra to Jones polynomials

In this paper we apply computer algebra (Maple) techniques to calculate Jones polynomial of graphs of K(2,q)-Torus knots. For this purpose, a computer program was developed. When a positive integer q is given, the program calculate Jones polynomial of graph of K(2,q)-Torus knots.     

Jamming and crystallization in athermal polymer packings

Dense packings of chains of hard spheres possess characteristic features that do not have a counterpart in corresponding packings of monomeric spheres especially near the maximally random jammed (MRJ) state. From the modelling perspective the additional requirement that spheres keep their connectivity while maximizing the occupied volume fraction imposes severe constraints on generation algorithms of dense chain configurations. The extremely sluggish dynamics imposed by the uncrossability of chains precludes the use of deterministic or stochastic dynamics to generate all but dilute polymer packings. As a viable alternative, especially tailored chain-connectivity-altering Monte Carlo (MC) algorithms have been developed that bypass this kinetic hindrance and have actually been able to produce packings of hard-sphere chains in a volume fraction range spanning from infinite dilution up to the MRJ state. Such very dense athermal polymer packings share a number of structural features with packings of monomeric hard spheres, but also display unique characteristics due to the constraints imposed by connectivity. We give an overview of the most relevant results of our recent modeling work on packings of freely-jointed chains of tangent hard spheres about the MRJ state, local structure, chain dimensions and their scaling with density, topological constraints in the form of entanglements and knots, contact network at jamming, and entropically driven crystallization.     

Knotted pictures of the GHZ states on the surface of a trivial torus

By means of the torus knot theory method, this paper presents the complete process of obtaining the knotted pictures of eight GHZ states on the surface of a trivial torus from the knotted pictures of eight basic three-qubit states on the surface of a trivial torus. Thus, we obtain eight knotted pictures 121 linkage on the ordinary plane.     

Entanglement complexity of lattice ribbons

We consider a discrete ribbon model for double-stranded polymers where the ribbon is constrained to lie in a three-dimensional lattice. The ribbon can be open or closed, and closed ribbons can be orientable or nonorientable. We prove some results about the asymptotic behavior of the numbers of ribbons withn plaquettes, and a theorem about the frequency of occurrence of certain patterns in these ribbons. We use this to derive results about the frequency of knots in closed ribbons, the linking of the boundary curves of orientable closed ribbons, and the twist and writhe of ribbons. We show that the centerline and boundary of a closed ribbon are both almost surely knotted in the infinite-n limit. For an orientable ribbon, the expectation of the absolute value of the linking number of the two boundary curves increases at least as fast as n, and similar results hold for the twist and writhe.     

Knot solitons in AFZ model

This paper studies the topological properties of knotted solitons in the (3+1)-dimensional Aratyn--Ferreira--Zimerman (AFZ) model. Topologically, these solitons are characterized by the Hopf invariant I, which is an integral class in the homotopy group π₃(S³)=Z. By making use of the decomposition of U(1) gauge potential theory and Duan's topological current theory, it is shown that the invariant is just the total sum of all the self-linking and linking numbers of the knot family while only linking numbers are considered in other papers. Furthermore, it is pointed out that this invariant is preserved in the branch processes (splitting, merging and intersection) of these knot vortex lines.     

Influences of flexible defect on the interplay of supercoiling and knotting of circular DNA

Knots are discovered in biophysical systems, such as DNA and proteins. Knotted portions in knotted DNA are significantly bent and their corresponding bending angles are comparable with or larger than the sharp bending angle resulting in flexible defects. The role of flexible defects in the interplay of supercoiling and knotting of circular DNA were predicted by a Monte Carlo simulation. In knotted DNA with a particular knot type, a flexible defect noticeably enhances the supercoiling of the knotted DNA and the decreasing excitation energy makes the knotted portion more compact. A reduction in twist rigidity and unwinding of flexible defects are incorporated into the numerical simulations, so that interplay of supercoiling and knotting of circular DNA is studied under torsional conditions. Increasing unwinding not only results in a wider linking number distribution, but also leads to a drift of the distribution to lower values. A flexible defect has obvious effects on knotting probability. The summation of equilibrium distribution probability for nontrivial knotted DNA with different contour length does not change with excitation energy monotonically and has a maximum at an intermediate value of excitation energy around 5 kBT. In the phase space of knot length and gyration radius of knotted DNA, knot length does not anticorrelate with its gyration radius, which is attributed to the flexible defect in the knotted portion, which leads to the release of bending energy and inhibited the competition between entropy and bending energy.     

Three-dimensional integrable models and associated tangle invariants

In this paper we show that the Boltzmann weights of the three-dimensional Baxter-Bazhanov model give representations of the braid group if some suitable spectral limits are taken. In the trigonometric case we classify all possible spectral limits which produce braid group representations. Furthermore, we prove that for some of them we get cyclotomic invariants of links and for others we obtain tangle invariants generalizing the cyclotomic ones.     

Selective Construction of Trefoil knots and a Molecular Borromean Ring Induced by Steric Hindrance of Thioether Ligands

Two Cp*−Rh^III based trefoil knots were obtained in high yield under ambient conditions via the coordination-driven self-assembly of semi-rigid thioether dipyridyl ligand 1,4-bis[(pyridin-4-ylthio)methyl]benzene ( L₁ ), ligand chloranilic acid (H₂− CA ) and 6,11-dihydroxytetracene-5,12-dione (H₂- TtDo ) with Cp*Rh^III metal corner units, respectively. Furthermore, using the bulkier 4,4′-{[(2,5-dimethyl-1,4-phenylene)bis(methylene)]bis(sulfanediyl)}dipyridine ( L₂ ) in the place of ligand L₁ in the construction process resulted in the formation of a teranuclear metallacycle and a template-free Borromean ring in high yields thanks to significantly altered intermolecular forces between the constituent ligands induced by the sterically-hindering methyl groups of L₂ , as demonstrated via a detailed X-ray crystallographic analysis and NMR spectroscopy.     

微液滴在仿蛛丝结构TiO2纤维表面的定向运动与粘附

制备了具有响应性的仿蛛丝周期纺锤节TiO₂纤维。通过改变纤维表面微观结构、紫外光照和超声波等手段,仿蛛丝结构TiO₂纤维表面浸润性会发生响应性变化。纤维表面的这种浸润性变化,不仅实现了水滴从纺锤节两端到中心处的定向运动,而且可以使得水滴被纤维纺锤节粘附。当仿蛛丝结构TiO₂纤维表面为亲水状态时,无论纺锤节光滑还是粗糙,水都是从纺锤节两端向中心方向运动;当仿蛛丝TiO₂纤维表面疏水时,水滴会被具有粗糙表面的纺锤节两端粘附。