Nonlocality as a feature of the physical world

Aprediction puzzle leads to a form ofnecessary realism which forces the rejection of a central tenet of the Copenhagen interpretation. This leads to reconsidering conceptual difficulties related to Bell's locality premise. It is shown that aparadox of elementary probability theory puts new light on Bell's assumption that causality and statistical independence are mutually incompatible. Nemo dat quod non habet : No one can offer more than he has ability to give; in that spirit, this paper is dedicated to the memory of J.S. Bell.     

Fractional noise

Fractional noiseN(t),t 0, is a stochastic process for every , and is defined as the fractional derivative or fractional integral of white noise. For = 1 we recover Brownian motion and for = 1/2 we findf ^–1-noise. For 1/2 1, a superposition of fractional noise is related to the fractional diffusion equation.     

Wiener distributions and white noise analysis

The paper describes the structure of a new space of generalized Wiener functionals, , called the Wiener algebra, or space of Wiener distributions, and demonstrates its use in the white noise analysis. The concepts of derivatives and integrals for multi-time parameter generalized stochastic process:^N are introduced, and a derivative version of Itô's lemma is proved. The algebraic structure of and its lattice of subspaces is elaborated, and within this framework a generalized version of the Malliavin calculus is presented.     

Assembly maps,K-theory, and hyperbolic groups

Following Connes and Moscovici, we show that the Baum-Connes assembly map forK _*(C*v) is rationally injective when is word-hyperbolic, implying the Equivariant Novikov conjecture for such groups. Using this result in topologicalK-theory and Borel-Karoubi regulators, we also show that the corresponding generalized assembly map in algebraicK-theory is rationally injective.     

Application of torsion angle molecular dynamics for efficient sampling of protein conformations

We investigate the application of torsion angle molecular dynamics (TAMD) to augment conformational sampling of peptides and proteins. Interesting conformational changes in proteins mainly involve torsional degrees of freedom. Carrying out molecular dynamics in torsion space does not only explicitly sample the most relevant degrees of freedom, but also allows larger integration time steps with elimination of the bond and angle degrees of freedom. However, the covalent geometry needs to be fixed during internal coordinate dynamics, which can introduce severe distortions to the underlying potential surface in the extensively parameterized modern Cartesian-based protein force fields. A "projection" approach (Katritch et al. J Comput Chem 2003, 24, 254-265) is extended to construct an accurate internal coordinate force field (ICFF) from a source Cartesian force field. Torsion crossterm corrections constructed from local molecular fragments, together with softened van der Waals and electrostatic interactions, are used to recover the potential surface and incorporate implicit bond and angle flexibility. MD simulations of dipeptide models demonstrate that full flexibility in both the backbone phi/psi and side chain chi1 angles are virtually restored. The efficacy of TAMD in enhancing conformational sampling is then further examined by folding simulations of small peptides and refinement experiments of protein NMR structures. The results show that an increase of several fold in conformational sampling efficiency can be reliably achieved. The current study also reveals some complicated intrinsic properties of internal coordinate dynamics, beyond energy conservation, that can limit the maximum size of the integration time step and thus the achievable gain in sampling efficiency.     

Relations between site percolation thresholds

By decomposing certain lattices into two sublattices, and examining at percolation threshold the structure of their infinite clusters, an approximate relation between p _c ⁰ , of the original lattice and p _c ¹ , of the sublattice is established: p _c ⁰ (p _c ¹ )^1/2. It is conjectured that an inequality always holds: p _c ⁰ (p _c ¹ )^1/2, and heuristic arguments are given to substantiate it. By similar considerations good estimates forp _c of certain correlated percolation problems are also obtained.     

Relativistic virial theorem for diatomic molecules. Application to H 2 +

Summary The virial theorem for a molecule in the relativistic clamped-nuclei approximation is derived. The individual energy contributionsA (momentum energy),B (mass energy),T=A+B (kinetic energy) andV (potential energy) are expressed in terms ofE, E/R (derivate w.r.t. the nuclear coordinates) and the relativistic correction E/² (derivative w.r.t. Sommerfield's fine-structure constant ). IfE and E/R are known as functions of , then all individual energy terms are also known as functions of . As an example, numerical results for H ₂ ⁺ are presented. The relativistic and nonrelativistic potential energy curves and the paradoxical behavior of their different contributions are analyzed and interpreted in both the largeR and shortR ranges.Dedicated to Professor W. Kutzelnigg on the occasion of his 60th birthday     

On the convergence of the LJ search method

The convergence of the Luus-Jaakola search method for unconstrained optimization problems is established.Notation E _n Euclideann-space - f Gradient off(x) - ² f Hessian matrix - (·) ^T Transpose of (·) - I Index set {1, 2, ...,n} - [x _i1 ^*(j) ] Point around which search is made in the (j + 1)th iteration, i.e., [x _1l ^*(j) ,x _2l ^*(j) ,...,x _n1 ^*(j) ] - r _i ⁽ⁱ⁾ Range ofx _il ^*(i) in the (j + 1)th iteration - l ₁ min_i {r _i ⁽⁰⁾ } - l ₂ min_i {r _i ⁽⁰⁾ } - A _j Region of search in thejth iteration, i.e., {x E _n:x _il ^*(j-1) –0.5r _i ^(j-1) x _ix _il ^*(j-1) +0.5r _i ^(j-1) ,i I} - S _j Closed sphere with center origin and radius _j - Reduction factor in each iteration - 1– - (·) Gamma function Many discussions with Dr. S. N. Iyer, Professor of Electrical Engineering, College of Engineering, Trivandrum, India, are gratefully acknowledged. The author has great pleasure to thank Dr. K. Surendran, Professor, Department of Electrical Engineering, P.S.G. College of Technology, Coimbatore, India, for suggesting this work.     

On the ν-dimensional one-component classical plasma: The thermodynamic limit problem revisited

We prove theH-stability property and the existence of the thermodynamic limit of the free energy density of the two-dimensional, one-component classical plasma. We give lower and upper bounds on the free energy density in any dimensionv and draw some consequences.     

An elementary proof of a converse mean-value theorem

We present a new converse mean value theorem, with a rather elementary proof.