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71.
2D difference gel electrophoresis reference map of a Fusarium graminearum nivalenol producing strain
Matias Pasquali Tommaso Serchi Jenny Renaut Lucien Hoffmann Torsten Bohn 《Electrophoresis》2013,34(4):505-509
Fusarium graminearum is widely studied as a model for toxin production among plant pathogenic fungi. A 2D DIGE reference map for the nivalenol‐producing strain 453 was established. Based on a whole protein extract, all reproducible spots were systematically picked and analyzed by MALDI‐TOF/TOF, leading to the identification of 1102 protein species. The obtained map contributes to the annotation of the genome by identifying previously nondescribed hypothetical proteins and will serve as a reference for future studies aiming at deciphering F. graminearum biology and chemotype diversity. 相似文献
72.
Water is an important component in living systems and deserves better understanding in chemistry and biology. However, due to the difficulty of investigating the water functions in protein structures, it is usually ignored in computational modeling, especially in the field of computer‐aided drug design. Here, using the potential of mean forces (PMFs) approach, we constructed a water PMF (wPMF) based on 3946 non‐redundant high resolution crystal structures. The extracted wPMF potential was first used to investigate the structure pattern of water and analyze the residue hydrophilicity. Then, the relationship between wPMF score and the B factor value of crystal waters was studied. It was found that wPMF agrees well with some previously reported experimental observations. In addition, the wPMF score was also tested in parallel with 3D‐RISM to measure the ability of retrieving experimentally observed waters, and showed comparable performance but with much less computational cost. In the end, we proposed a grid‐based clustering scheme together with a distance weighted wPMF score to further extend wPMF to predict the potential hydration sites of protein structure. From the test, this approach can predict the hydration site at the accuracy about 80% when the calculated score lower than ?4.0. It also allows the assessment of whether or not a given water molecule should be targeted for displacement in ligand design. Overall, the wPMF presented here provides an optional solution to many water related computational modeling problems, some of which can be highly valuable as part of a rational drug design strategy. © 2012 Wiley Periodicals, Inc. 相似文献
73.
T. Shinonaga J. Casta K. Mück M. H. Gerzabek 《International journal of environmental analytical chemistry》2013,93(2):175-184
Abstract Trace amounts of iodine in thirty-eight cereal grain samples cultivated at different locations in Austria were determined for the first time in this study by radiochemical neutron activation analysis. For the dissolution of cereal grain samples and standard reference materials, two different procedures, alkaline and acidic dissolution, were applied in the presence of an iodine carrier. Rapid and simple dissolution procedure with acidic solution was demonstrated in this study. The analytical values in the cereal grain as well as in the standard reference materials obtained by the different dissolution procedures were in good agreement within one standard deviation. The iodine in cereal grains and the standard reference materials ranged from 0.002 to 0.03 μg g?-1 and 0.0015 to 0.30 μg g?-1, respectively. The distribution of relative standard deviation (RSD) for iodine concentration below 0.01 μg g?-1 were 21% and 24% of all data for the range 1–10% RSD and 11–20% RSD, respectively. The RSD for 0.1 μg g?1 of iodine concentrations were around 10% 相似文献
74.
A detailed statistical examination of replicated data used to certify platinum-group elements (PGEs) in environmental reference material BCR-723 is presented. Certification of Pt, Pd, and Rh concentrations in BCR-723 was based on 16, eight, and nine accepted data sets, respectively. Each accepted data set contained six replicated measurements for each PGE, and the statistical properties of these concentration data were examined, i.e. 96 for Pt, 48 for Pd, and 54 for Rh. This level of investigation has received limited attention but is critical in furthering our understanding of PGE variability and representativeness. Concentrations of Pt, Pd, and Rh were shown to differ significantly between accepted data sets. Palladium and Pt differed in their quantification between detection techniques. Additionally, Pd and Pt concentrations varied significantly between laboratories using a similar definitive method (inductively coupled plasma-isotope dilution mass spectrometry). The distribution of Pd concentrations was found to be bimodal, with a secondary population exhibiting a contamination signal of about 15%. The secondary population, not previously reported in BCR-723, is likely a measurement artifact and not due to a nugget effect. Comparisons of BCR-723 with other environmental media from Europe, i.e. airborne particulate matter, tunnel dust, and road-deposited sediment, indicated that Pd is uncommonly low in BCR-723 (6.0?ng?g?1) and is generally not representative in terms of its distribution relative to Pt and Rh. Serious consideration should be given to developing a new PGE certified environmental reference material. 相似文献
75.
Gonçalo A. S. Dias Juha H. Videman 《Mathematical Methods in the Applied Sciences》2015,38(17):4038-4051
We consider the coupled problem describing the motion of a linear array of three‐dimensional obstacles floating freely in a homogeneous fluid layer of finite depth. The interaction of time‐harmonic waves with the floating objects is analyzed under the usual assumptions of linear water‐wave theory. Quasi‐periodic boundary conditions and a simplified reduction scheme turn the system into a linear spectral problem for a self‐adjoint operator in Hilbert space. Based upon the operator formulation, we derive a sufficient condition for the nonemptiness of its discrete spectrum. Various examples of obstacles that generate trapped modes are given. Copyright © 2014 John Wiley & Sons, Ltd. 相似文献
76.
A new multireference perturbation series is derived based on the Rayleigh–Schrödinger perturbation theory. It is orbitally invariant. Its computational cost is comparable to the single reference Møller–Plesset perturbation theory. It is demonstrated numerically that the present multireference second‐ and third‐order energies are size extensive by two types of supermolecules composed of H2 and BH monomers. Spectroscopic constants of as well as the ground state energies of H2O, NH2, and CH2 at three bond lengths have been calculated with the second multireference perturbation theory. The dissociation behaviors of CH4 and HF have also been investigated. Comparisons with other approximate theoretical models as well as the experimental data have been carried out to show their relative performances. © 2013 Wiley Periodicals, Inc. 相似文献
77.
Determination of fungicides in sediments using a dispersive liquid–liquid microextraction procedure based on solidification of floating organic drop
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Sheying Dong Guiqi Huang Jinsuo Lu Tinglin Huang 《Journal of separation science》2014,37(11):1337-1342
A dispersive liquid–liquid microextraction procedure based on solidification of floating organic droplet has been investigated for the determination of fungicides (cyprodinil, difenoconazole, myclobutanil, and spiroxamine) in sediments by HPLC with diode array detection. In the overall extraction process, the extraction solvents can be separated easily from the sample solution, and the experiment time was shortened. Moreover, several parameters such as the type and volume of the extraction solvent and dispersive solvent, centrifugal speed, extraction time, and salt effect that affect the extraction efficiencies of the target fungicides were studied and optimized. Under the optimized conditions, the LOD for the target analytes were in the range of 0.1–0.5 μg/g. Satisfactory recoveries of the target analytes in the sediment samples were 81.00–99.00%, with RSDs (n = 5) that ranged from 1.8 to 6.5%. Finally, the simple, sensitive, and environmentally friendly method was successfully applied to determine the target fungicides in actual sediment samples. 相似文献
78.
The voluminous utilization and application of plate and frame heat exchangers (PFHE) in many industries has accelerated the consumer and designer both to optimize exchanger total cost. Over the last few years, several old and new generation algorithms were employed and exploited to optimize PFHE cost. This study explores the application and performance of three new-generation algorithms Big Bang-Big Crunch (BBBC), Grey Wolf Optimizer (GWO), and Water Evaporation Optimization (WEO) in designing optimally PFHE. Besides, this study also compares the performance of three well-established old generations algorithms namely genetic algorithm (genetics and natural selection), particle swarm optimization (animals behaviour), and differential evolution (population-based) with the above three new algorithms in the optimization of PFHE.Seven design factors are chosen for PFHE optimization: exchanger length on hot and cold sides, height and thickness of fin, length of the fin-strip, fin frequency, and the number of hot side layers. The applicability of the suggested algorithms is assessed using a case study based on published research. Though DE performs the best in this study of design optimization concerning total cost and computational time, the three new-generation meta-heuristic algorithms BBBC, GWO, and WEO also provide the novel scope of application in heat exchanger design optimization and successfully finding the cost of the heat exchanger. According to this study, capital costs increase by 19.5% for BBBC, 24% for GWO, and 7.6% for GWO, but operational costs fall by 9.5% for BBBC and GWO when compared to the best performing algorithm (DE). On the other hand, WEO shows an increase of 32.6% in operational costs. Aside from that, a full analysis of the computing time for each algorithm is also provided. The DE has the quickest run time of 0.09 ?s, while the PSO takes the longest at 33.97 ?s. The rest of the algorithms have nearly identical values. As a result, a good comparison is established in this study, offering an excellent platform for designers and customers to make selections. Additionally, the three new generations algorithms mentioned here were not used earlier for optimization of PFHE and the comparative study illustrates that each of them possesses eat potential for cost optimization and also solving other complex problems. 相似文献
79.
Xue Chen Kunchao Lu Donghai Lin Yan Li Shiyu Yin Zhiyi Zhang Meihua Tang Guosong Chen 《Electroanalysis》2021,33(2):473-482
Hierarchical porous tubular biochar (PTBC) was prepared by selectively removing lignin simply according to reverse the pyrolysis sequence of cellulose. The properties of the PTBC sample were characterized by XRD, SEM, TEM, Raman spectra, cyclic voltammetry and electrochemical impedance spectroscopy. The electrochemical performances of PTBC modified on the screen-printing electrode illustrated excellent detection of lead ions (lead (II)) in water with the linear range (0.5–120 μg/L) and the detection limit (0.02 μg/L) by in-situ bismuth film square wave anode stripping voltammetry. 相似文献
80.