The Pharmacophore Hypothesis of Novel Inhibitors for Aurora A Kinase

A three-dimensional pharmacophore model was developed from a series of inhibitors of Aurora A kinase to discover new potent anti-cancer agents using the HypoGen module in the Catalyst software. The pharmacophore model was developed based on the structure of 20 currently available inhibitors, which were carefully selected from the literature. The best hypothesis （Hypo 1） was defined by four features： one hydrogen-bond donor and three hy- drophobic points, with the best correlation coefficient of 0.909, the lowest rms deviation of 1.563, and the highest cost difference of 99.075. The Hypo 1 was then validated by a test set consisting of 24 compounds and by a cross-validation of 95% confidence level through randomizing the data using the CatScramble program, which suggested that a predictive pharmacophore model had been successfully obtained.     

超球坐标下原子、分子体系的变分计算：—氦原子和氢负离子基态

应用超球会标表示氦原子和氢负离子的薛定谔方程，将二电子原子在三维空间中的运动转化为单电子原子在六维空间中受广义库仑力作用的运动，我们给出了六维空间广义角动量算符的本征值与本征函数，并以此本征函数微基构造超球波函数，得到超球径微分方程，以广义Laguerre 多项式表示超球径波函数，运用密度矩阵和线性变分法得到非正交基下超球径波函数满足的久期方程，最后求得能量和波函数，计算结果与精确的计算符合良好。     

Photolytic oxidation of As species for determination of total As (including the ‘hidden’ As fraction) in coastal seawater by hydride generation-atomic fluorescence spectrometry

Ultraviolet irradiation (photolysis) in alkaline medium was applied for pretreatment of seawater samples so as to accurately determine total As by continuous-flow hydride generation-atomic fluorescence spectrometry. This sample pretreatment is meant to convert non-reducible As forms into inorganic As, which easily forms arsine. The optimised parameters were the treatment time and the pH of the medium. The behaviour of four hydride-reactive As species [As(III), As(V), MMA, DMA], and AsB, i.e. a typical non-hydride-reactive As species, when subjected to UV irradiation was studied. UV irradiation at pH 1 lead to conversion of all species into As(V) with the exception of AsB and DMA. Conversions of DMA and AsB into As(V) at pH 11 in less than 30 min were observed under UV irradiation. The limit of detection of As (measured as As(V)) by hydride generation-atomic fluorescence spectrometry was 0.1 μg/L and the repeatability of the oxidation procedure was about 10%. The method was applied to determination of total and directly reducible As at 11 sampling points of the Galician Coast (Atlantic Ocean, Spain). Total As concentrations were in the range 1.4-4.8 μg/L. A significant As fraction, between 20 and 44%, depending on the sampling point, corresponded to non-reducible As which was converted by UV irradiation into hydride-reactive As. This fraction should represent the sum of DMA, which yields a low sensitivity in the continuous flow-AFS system, and the hidden As fraction.     

Total synthesis of dapiramicin B

The first total synthesis of dapiramicin B, a nucleoside antibiotic, is described. The characteristic N-glycoside linkage in dapiramicin B was effectively constructed by way of the Pd-catalyzed coupling reaction of a heptopyranosylamine with a bromopyrrolopyrimidine derivative.     

Clustering of chemical databases by means of the projection of maximum overlapping sets similarity measurements onto multidimensional spaces

In this paper, we propose a new method for clustering of chemical databases based on the representation of measurements of structural similarity onto multidimensional spaces. The proposed method permits the tuning of the clustering process through the selection of the dimension of the projection space, the normal vectors and the sensibility of the projection process. The structural similarity of each element regarding to the database elements is projected onto the defined spaces generating clusters that represent the characteristics and diversity of the database and whose size and characteristics can be easily adjusted.     

Scaling in second-order electron correlation calculations using systematic sequences of even-tempered basis sets

Improved results can often be obtained from second-order Rayleigh-Schrödinger perturbation calculations of electron correlation energies using large basis sets by introducing a scaling factor in the zero-order Hamiltonian. The scaling parameter may be determined from full third-order calculations using a smaller basis set. This scaling procedure can be applied in a systematic fashion by employing a sequence of even-tempered basis sets. Calculations illustrating this approach for the beryllium atom and the neon atom are presented. The scaling procedure is also employed in conjunction with a universal systematic sequence of basis functions. Calculations illustrating this Correlation energy — Mang-body perturbation theory.Work supported in part by S.R.C. Research Grant GR/B/4738.6.S.R.C. Advanced Fellow.     

Adsorption Behavior of a Water-soluble Porphyrin at the Glass-water Interface as Studied by Synchronous Total Internal Reflection Fluorescence Spectroscopy

Total imernal reflection fluorescence spectroscopy (TIRF) and synchronous scanning technique were combined to study the adsorption behavior of the meso-tetrakis (4-sulfonatophenyl)porphyrin (TPPS) at the glass-water interface without any surfactant. The pH dependence of synchronous fluorescence signal at the interface was analyzed. Both unprotonated (TPPS^4-) and diprotonated (H2TPPS^2-) forms of TPPS were observed at the interface. But the interface favored the adsorption of. The apparent estimated pKa2 value shifted from 5.00 in the bulk solution to 2.7 at the interface. STIRF provides a good technique to study multi-component systems at the interface.     

Synthesis of [13]-membered macrocyclic stevastelins via a transesterification reaction as the key step: total synthesis of stevastelin C3

A new synthesis of stevastelin C3 (3), a [13]-membered ring component of the stevastelin family, whose structure was recently revised, is reported. Initially, a macrolactonization approach was attempted to generate the [13]-membered macrolactone but this met with failure, so a translactonization reaction was tried to obtain the targeted stevastelin C3 (3) from the corresponding [15]-membered ring counterpart. Unfortunately, this strategy did not prove successful, and, consequently, we opted to undertake a transesterification reaction from 23, as a means to accommodate the requisite aminoacid moiety at the correct position, to obtain 24. From 24, and through intermediates 25-28, the acyclic precursor of the [13]-membered ring macrolactone, compound 30, was efficiently prepared. By utilizing the synthetic course developed by Chida, we took 30 forward and completed the total synthesis of stevastelin C3 (3).     

Electron-density-dependent fused-sphere surfaces derived from pseudopotential calculations

Fused-sphere surfaces can be used to mimic a molecular boundary associated with a constant value of the electron density. The simplest of such fused-sphere models are constructed by using the atomic radii for the spherical isodensity surfaces of individual atoms. In this work, we discuss the extension of this model to molecules containing atoms beyond the second row. In these many- electron systems, the computation of electron densities is usually simplified by adopting a pseudopotential (or effective-core potential) approach. Here, we discuss the performance of large- and small-core pseudo-potential calculations as a tool to derive atomic radii. Our results provide an optimum set of variable radii that can be used to build fused-sphere surfaces. This continuum of surfaces provides a simple approximation to the low-electron-density regions around molecules with heavy atoms.     

同步辐射白光全反射XRF在痕量元素检测的初步应用研究

叙述了同步辐射白光全反射Ｘ射线荧光分析的实验装置，给出了几种标准物质ＴＸＲＦ实验的检出限，并对实验结果进行了讨论。