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11.
Omp33-36 in A. baumannii, a bacterium causing serious nosocomial infections, is a virulence factor associated with the pathogen metabolic fitness as well as its adherence and invasion to human epithelial cells. This protein is also involved in interaction of the bacteria with host cells by binding to fibronectin. Moreover, Omp33-36 renders cytotoxicity to A. baumannii in addition to inducing apoptosis and modulation of autophagy. In the present study, an integrated strategy is launched to pierce into the 3D structure of Omp33-36 protein. The signal peptide within the sequence was determined, then, topology as well as secondary and tertiary structures of the protein were predicted. The mature protein assigned as a 14-stranded barrel in which residues 1–19 is removed as signal peptide. The obtained 3D models were evaluated in terms of quality; and then, served as queries to find similar protein structures. The hits were analyzed regarding topology among which 14-stranded were considered. The most qualified model was refined and then its sequence aligned to its counterpart similar structure protein (CymA from Klebsiella oxytoca). The determined structure of Omp33-36 could justify its porin function and carbapenem-resistance associated with the loss of this protein. 相似文献
12.
Zhiyong SunGangquan Si 《Communications in Nonlinear Science & Numerical Simulation》2012,17(8):3461-3463
In this comment letter we point out that the main result of the recent paper [Xu Y, Zhou W, Fang J, Sun W. Topology identification and adaptive synchronization of uncertain complex networks with adaptive double scaling functions. Commun Nonlinear Sci Numer Simul 2011;16(18):3337-43] has certain errors. The mistakes are corrected and a correct version is presented in this letter. We further indicate that a sufficient condition has been neglected in a series of articles discussing the same topic of network topology identification; hence we hope this letter can help clarify some unclear concepts about this topic. 相似文献
13.
In this paper, the notion of almost fuzzy compactness is defined in L-fuzzy topological spaces by means of inequality, where L is a completely distributive DeMorgan algebra. Its properties are discusse... 相似文献
14.
In this paper using the concept of Felbin-type fuzzy 2-norm ‖.,.‖ on a vector space,two Ⅰ-topologies τ‖.,.‖ and τ*‖.,.‖ is constructed.After making our elementary observations on this fuzzy Ⅰ-topologie... 相似文献
15.
The concept of coverings is one of the fundamental concepts in topological spaces and plays a big part in the study of topological problems. This motivates the research of covering rough sets from topological points of view. From topological points of view, we can get a good insight into the essence of covering rough sets and make our discussions concise and profound. In this paper, we first construct a type of topology called the topology induced by the covering on a covering approximation space. This notion is indeed in the core of this paper. Then we use it to define the concepts of neighborhoods, closures, connected spaces, and components. Drawing on these concepts, we define several pairs of approximation operators. We not only investigate the relationships among them, but also give clear explanations of the concepts discussed in this paper. For a given covering approximation space, we can use the topology induced by the covering to investigate the topological properties of the space such as separation, connectedness, etc. Finally, a diagram is presented to show that the collection of all the lower and upper approximations considered in this paper constructs a lattice in terms of the inclusion relation ⊆. 相似文献
16.
This paper presents a 3D topology optimization approach for designing shell structures with a porous or void interior. It is shown that the resulting structures are significantly more robust towards load perturbations than completely solid structures optimized under the same condi-tions. The study indicates that the potential benefit of using porous structures is higher for lower total volume fractions. Compared to earlier work dealing with 2D topology opti-mization, we found several new effects in 3D problems. Most notably, the opportunity for designing closed shells signifi-cantly improves the performance of porous structures due to the sandwich effect. Furthermore, the paper introduces improved filter boundary conditions to ensure a completely uniform coating thickness at the design domain boundary. 相似文献
17.
Two new potassium coordination supramolecular compounds (2D and 1D), [K(H3L)(H2L)(H2O)]n·H2O (1) and [K(H2L′)(HL′)(H2O)2]·H2O (2), (L = 1,3,5-tricarboxylic acid, L′ = 2,6-pyridinedicarboxylic acid), have been synthesized under different experimental conditions. Micrometric crystals (bulk) or nano-sized materials have been obtained depending on using the branch tube method or sonochemical irradiation. All materials have been characterized by field emission scanning electron microscopy (FE-SEM), scanning electron microscopy (SEM), powder X-ray diffraction (PXRD), FT-IR spectroscopy and elemental analyses. Single crystal X-ray analyses on compounds 1 and 2 show that K+ ions are 3- and 7-coordinated, respectively. Additionally, H-bonds incorporate the layers and chains in 1 and 2 into 3D and 2D (along (0,0,1) direction) frameworks. Topological analysis shows that the compound 1 and 2 are 3,6-coordinated kgd and 2,4-coordinated 2,4C4 net. The thermal stability of compounds 1 and 2 in bulk and nano-size has been studied by thermal gravimetric (TG) and differential thermal analyses (DTA) and compared each other. The role of different parameters like temperature, reaction time and ultrasound irradiation power on the growth and morphology of the nano-structures are studied. Results suggest that an increase of temperature, sonication power and reduction of reaction time led to a particle size decrease. 相似文献
18.
Yao Huang Long‐Jiang Liu Ming‐Shan Zhou Xiao‐Jun Zhou Chao Zhu Fei‐E Fu Yong‐Ming Zhang 《无机化学与普通化学杂志》2013,639(10):1884-1887
Two metal‐organic frameworks, [Zn(dmtrz)(btrc)1/3]n ( 1 ) and [Zn2(dmtrz)2(btec)(H2O)2]n ( 2 ) (dmtrz = 3, 5‐dimethyl‐1‐H‐1, 2,4‐triazole, btrc = 1, 3,5‐benzenetricarboxylate, btec = 1, 2,4, 5‐benzenetetracarboxylate), were synthesized by hydrothermal reaction. The crystal structure analysis reveals that compound 1 is a dense 3D framework with Schläfli symbols of {43}2{46 · 66 · 83}3, which is a loh1 structure. Compound 2 is a 2D network. In addition, the photoluminescence of two compounds were studied in solid state at room temperature, together with their thermal analysis. 相似文献
19.
Yan‐Xue Chen Kang‐Kang Tang Xin Wang Bing‐Yi Chen Guo‐Qiang Qin Jin‐Hui Yang 《无机化学与普通化学杂志》2014,640(11):2292-2295
The zinc(II) coordination polymer [Zn3(BPT)2(μ2‐H2O)2(H2O)2]n · n(DMA) ( 1 ) (H3BPT = biphenyl‐3,4′,5‐tricarboxylic acid, DMA = N,N′‐dimethylactamide) was obtained by the solvothermal reaction of H3BPT with Zn(NO3)2 in DMA/H2O mixed solvent. Single crystal X‐ray analysis reveals that compound 1 has a complicated 3D framework containing linear trinuclear [Zn3(COO)4(μ2‐H2O)2] clusters as building subunits, which can be simplified into a (3,6)‐connected rtl topological network with the Schläfli symbol {4.62}2{42.610.83}. The calculated results of total and partial density of states (DOS) indicate that the luminescence of 1 mainly originates from intraligand charge transfer. 相似文献
20.
《Comptes Rendus Physique》2016,17(8):934-945
Microcavity polaritons are mixed light–matter quasiparticles with extraordinary nonlinear properties, which can be easily accessed in photoluminescence experiments. Thanks to the possibility of designing the potential landscape of polaritons, this system provides a versatile photonic platform to emulate 1D and 2D Hamiltonians. Polaritons allow transposing to the photonic world some of the properties of electrons in solid-state systems, and to engineer Hamiltonians for photons with novel transport properties. Here we review some experimental implementations of polariton Hamiltonians using lattice geometries. 相似文献