Initiation of Protein Synthesis with Non‐Canonical Amino Acids In Vivo

By transplanting identity elements into E. coli tRNA^fMet, we have engineered an orthogonal initiator tRNA (itRNA^Ty2) that is a substrate for Methanocaldococcus jannaschii TyrRS. We demonstrate that itRNA^Ty2 can initiate translation in vivo with aromatic non‐canonical amino acids (ncAAs) bearing diverse sidechains. Although the initial system suffered from low yields, deleting redundant copies of tRNA^fMet from the genome afforded an E. coli strain in which the efficiency of non‐canonical initiation equals elongation. With this improved system we produced a protein containing two distinct ncAAs at the first and second positions, an initial step towards producing completely unnatural polypeptides in vivo. This work provides a valuable tool to synthetic biology and demonstrates remarkable versatility of the E. coli translational machinery for initiation with ncAAs in vivo.     

超声心动图联合动态心电图检查对急性心肌梗死诊断和预后评估的价值

为探讨超声心动图联合动态心电图检查在急性心肌梗死(AMI)患者诊断和预后评估中的应用价值,本研究选取2016年6月~2018年6月我院收治并确诊的100例AMI患者作为观察组,另选取同期100例非冠心病患者作为对照组。以AMI患者心源性死亡为终点事件,将观察组分为死亡组(n=15)和存活组(n=85)。所有患者均采用飞利浦IU-Elite及EPIQ5彩色多普勒超声诊断仪进行超声心动图检查,采用DMS-3004A进行标准的12导联动态心电图检查。比较各组患者心率震荡指标[震荡起始(TO)、震荡斜率(TS)]、心率变异性指标[NN间期标准差(SDNN)、QT离散度(QTd)、经心率校正的QT离散度(QTcd)]及心功能指标[左心室舒张末期内径(LVEDD)、左心室射血分数(LVEF)]水平的变化。结果显示,观察组TO、QTd、QTcd、LVEDD均明显高于对照组,TS、SDNN、LVEF均明显低于对照组,差异有统计学意义(P<0.05)。死亡组TS、SDNN均明显低于存活组,差异有统计学意义(P<0.05);死亡组TO高于存活组,QTd、QTcd、LVEF、LVEDD均低于存活组,但差异无统计学意义(P>0.05)。本研究结果表明,AMI患者心率震荡(HRT)明显减弱甚至消失,HRV、LVEF明显降低,LVEDD、QTd明显增大,QT间期明显延长。超声心动图和动态心电图联合检查对AMI患者诊断及预后评估均有重要的临床应用价值。     

Recombination induced hypergraphs: A new approach to mutation-recombination isomorphism

Natural selection acts on genetic variation that comes from two principal sources: mutation and recombination. Because of the inherent differences between mutation and recombination, it is often assumed that they are qualitatively different ways to explore the genotype space. In this paper a new way of constructing recombination spaces is introduced and the topological features of the resulting hypergraphs are analyzed. It is shown that types which are neighbors in the point mutation space are also neighbors in the recombination space, i.e., mutation and recombination spaces are homomorphic. This implies that the shapes of the fitness functions explored by mutation and recombination are similar. However, the potential of one- and two-point recombination operators to explore the fitness landscape may differ dramatically from uniform recombination operators or mutation operators because of the limited number of recombinant types they can produce. © 1996 John Wiley & Sons, Inc.     

Right Spread序的若干封闭性质

§1Introductionandmotivation Itisalwaysofinteresttocomparethevariabilityoftworandomvariablesinreliability theoryandeconomics.Thecomparisonsbasedonmomentssuchasvarianceandstandard deviationarenotveryinformativealthoughsuchmeasuresaresimpletouse.Meanwhile,sincethesecomparisonsarestaticones,andhencetheirapplicationsinsomefields,e.g.,reliabilityandfinance,arerestricted.Inthesefields,however,somedynamicalcomparisons areneeded.Asaresult,severalstochasticordersthataremorerefinedhavebeen establishedi…     

一组新氨基酸描述子用于肽定量构效关系研究

用主成分分析从20种天然氨基酸0D～3D结构信息中收集到的共1369个描述子变量得到了一组新氨基酸描述子(SZOTT), 将其用于血管紧张素转化酶抑制剂和苦味二肽结构表征并以偏最小二乘法建立定量构效关系模型, 得复相关系数R_CU²分别为0.894和0.908, 留一法交互检验的复相关系数R_CV²分别为0.828和0.736, 估计均方根误差RMS分别为0.331和0.195. 研究结果表明, SZOTT描述子含信息量大, 操作简便, 结构表达能力强, 有望在多肽定量构效关系研究中得到进一步推广.     

Variability in the noise-induced modes of climate dynamics

New features of noise-induced climate variability are revealed on the basis of the three-dimensional model derived by Saltzman and Maasch. It is shown that the climate system can be highly noise excitable and it possesses the large-amplitude fluctuations even in those regions where its akin deterministic model does not contain any self-sustained oscillations. Intermittency in small- and large amplitude climate fluctuations between different basins of attraction of a limit cycle and stable equilibria substantially influencing the climate state (from warm to cold and vice versa) are found at various noise intensities. Suddenly occurring jumps between the basins of attraction of two stable equilibria corresponding to the warm and cold climate states are statistically confirmed under a certain diapason of noise intensities. The climate system undergoes transitions between its equilibria in the presence of noise in its prognostic variables. In addition, such transitions become more likely with increasing the noise intensity.     

On the Variability of Heart Rate Variability—Evidence from Prospective Study of Healthy Young College Students

Heart rate variability (HRV) has been widely used as indices for autonomic regulation, including linear analyses, entropy and multi-scale entropy based nonlinear analyses, and however, it is strongly influenced by the conditions under which the signal is being recorded. To investigate the variability of healthy HRV under different settings, we recorded electrocardiograph (ECG) signals from 56 healthy young college students (20 h for each participant) at campus using wearable single-lead ECG device. Accurate R peak to R peak (RR) intervals were extracted by combing the advantages of five commonly used R-peak detection algorithms to eliminate data quality influence. Thorough and detailed linear and nonlinear HRV analyses were performed. Variability of HRV metrics were evaluated from five categories: (1) different states of daily activities; (2) different recording time period in the same day during free-running daily activities; (3) body postures of sitting and lying; (4) lying on the left, right and back; and (5) gender influence. For most of the analyzed HRV metrics, significant differences (p < 0.05) were found among different recording conditions within the five categories except lying on different positions. Results suggested that the standardization of ECG data collection and HRV analysis should be implemented in HRV related studies, especially for entropy and multi-scale entropy based analyses. Furthermore, this preliminary study provides reference values of HRV indices under various recording conditions of healthy young subjects that could be useful information for different applications (e.g., health monitoring and management).     

Generating Artificial Reverberation via Genetic Algorithms for Real-Time Applications

We introduce a Virtual Studio Technology (VST) 2 audio effect plugin that performs convolution reverb using synthetic Room Impulse Responses (RIRs) generated via a Genetic Algorithm (GA). The parameters of the plugin include some of those defined under the ISO 3382-1 standard (e.g., reverberation time, early decay time, and clarity), which are used to determine the fitness values of potential RIRs so that the user has some control over the shape of the resulting RIRs. In the GA, these RIRs are initially generated via a custom Gaussian noise method, and then evolve via truncation selection, random weighted average crossover, and mutation via Gaussian multiplication in order to produce RIRs that resemble real-world, recorded ones. Binaural Room Impulse Responses (BRIRs) can also be generated by assigning two different RIRs to the left and right stereo channels. With the proposed audio effect, new RIRs that represent virtual rooms, some of which may even be impossible to replicate in the physical world, can be generated and stored. Objective evaluation of the GA shows that contradictory combinations of parameter values will produce RIRs with low fitness. Additionally, through subjective evaluation, it was determined that RIRs generated by the GA were still perceptually distinguishable from similar real-world RIRs, but the perceptual differences were reduced when longer execution times were used for generating the RIRs or the unprocessed audio signals were comprised of only speech.     

人类A3腺苷受体拮抗剂1,2,4-三唑并[1,5-α]喹喔啉衍生物的QSAR研究

采用遗传算法构建了27种人类腺苷受体拮抗剂1,2,4-三唑并[1,5-α]喹喔啉衍生物与受体之间的亲和性的QSAR模型.为得到理想模型,计算了拓扑学、热力学、空间、电子拓扑状态和量子化学描述符.结合这些参数得到最终模型:ENpKi=13.407-0.027*FC-8-0.033*FC-8 0.845*Atype_C_28-19.493*Shadow_XYfrac.计算得到的统计学指标为:LOF=0.291,r2=0.766,ra2dj=0.723,F-test=17.974,PRESS=3.469,CV-r2=0.791.通过对模型进行分析,得到如下结论:降低C-8位亲电、亲核原子的前线电子密度的权重和分子在XY平面的投影分数,增加疏水性原子类型描述符Atpye_C_28的值,都对增加化合物分子与受体的亲和性有利.利用此模型合理的设计了两个新的化合物,并预测具有较高的结合活性.该研究为喹喔啉衍生物作为人类A3腺苷受体拮抗剂的结构改造提供理论指导,并为进一步研究受体与配体亲和性机理奠定理论基础.