Influence of cooperativity on the frequency shift of the Ar–H stretch vibration in HArF complexes

CH₃Li–FArH–X (X?=?H₂, OC, N₂, P₂, CO₂, CO, BeH₂) trimers have been investigated using quantum chemical calculations at the QCISD/6-311++G(2d,2p) level. The results show that the lithium bonding has a prominent effect on the strength and properties of the hydrogen bonding. The hydrogen-bonding interaction energy is increased by 160–340% due to the presence of lithium bonding. The Ar–H stretch vibration shows a blue shift in the FArH–X (X?=?H₂, OC, N₂, CO₂, CO) dimer, but a red shift in the FArH–X (X?=?P₂, BeH₂) dimer. The red shift is increased in the corresponding trimer, while the blue shift shows a different change. The blue shift is also increased in CH₃Li–FArH–X (X?=?H₂, OC, N₂, CO₂) trimers, but it changes to a red shift in the CH₃Li–FArH–CO trimer. The shift change is consistent with the explanation given by Joseph and Jemmis.     

DFT study on the mechanism of trimolecular radical reactions: isomerisation in small clusters

ABSTRACT

Structural and thermodynamic properties of 48 trimolecular clusters containing one radicl and two protic molecules (H₂O, NH₃, H₂O₂, CH₃OH, HOCl) were studied at B3LYP/6-311++G(3df,3pd) level of theory. These radical-clusters have non-cyclic structures and are stabilised via two inter-molecular hydrogen bonding interactions. The calculated enthalpies of formation of the radical-clusters were generally in the range of ?30 to ?50 kJ/mol. The calculated activation energies (E_a) of the intra-cluster hydrogen transfers were smaller than 70 kJ/mol. Also, structures and thermodynamics of 15 cyclic molecular clusters as well as multi-hydrogen transfers in them were investigated. The results showed that the stability of the cyclic clusters and activation energies of the multi-hydrogen transfers depend on the cluster size.     

Hydrogen bonds at silica–CO2 saturated water interface under geologic sequestration conditions

To investigate the effects of sequestration condition on hydrogen bonds between mineral and water, molecular dynamics simulations have been performed. The simulations were conducted at conditions related with geologic sequestration sites: pressure (3.1–32.6 MPa), temperature (318 and 383 K), salinity (0–3 M), salt (NaCl and CaCl₂) and silica surface models Q² (geminal), Q³ (isolated) and amorphous Q³. The hydrogen bonds were classified into four types: silica–silica, silica–dissolved CO₂, silica–water as donors and silica–water as acceptors. The mean numbers of hydrogen bonds for each type were analysed. The results show that: (1) silica surface silanol groups do not form H-bonds with dissolved CO₂ molecules in water (brine); (2) The mean number of hydrogen bonds between silanol groups follows the order: Q² > amorphous Q³ > Q³; (3) The mean number of hydrogen bonds between silanol and water molecules follows the order: Q³ > amorphous Q³ > Q².     

Hydrogen adsorption on Pt-decorated closed-end armchair (3,3), (4,4) and (5,5) single-walled carbon nanotubes

ABSTRACT

Structures of small lengths of capped (3,3), (4,4) and (5,5) single-walled carbon nanotubes (SWCNTs) and their structures decorated by Pt atom and Pt_n clusters (n = 2–4) were obtained using density functional theory calculations. Binding abilities of Pt atom and Pt_n clusters on the outer surface of SWCNTs at various adsorption sites were explored. Adsorptions of H₂ onto Pt atom of the Pt-decorated (3,3), (4,4) and (5,5) SWCNTs were studied and their adsorption energies are reported. The thermodynamic properties and equilibrium constants for H₂ adsorptions on the Pt₄-decorated (3,3), (4,4) and (5,5) SWCNTs were obtained. The adsorption of H₂ on the Pt atom of the Pt₄/(3,3) SWCNT was found to be the most preferred reaction of which enthalpy and free energy changes at room temperature are ?46.61 and ?23.99 kcal/mol, respectively.     

The influence of hydrogen- and lithium-bonding on the cooperativity of chalcogen bonds: A comparative ab initio study

ABSTRACT

The aim of this study is to investigate the influence of a hydrogen- or lithium-bonding interaction on the cooperativity of chalcogen bonds in linear NCH···(OCX)_2–5 and NCLi···(OCX)_2-5 clusters (X?=?S, Se). The nature of interactions in the optimised structures is analysed by means of molecular electrostatic potential, quantum theory of atoms in molecules, natural bond orbital and electron density difference methods. According to our results, the formation of a lithium-bonding interaction in NCLi···(OCX)_2-5 clusters induces a large increase in the strength of X···O chalcogen bonds, and hence their cooperativity. This can be mainly rationalised in terms of the electrostatic nature of chalcogen bonds as well as the fundamental orbital interaction between the interacting OCX subunits. The results of this study provide a theoretical evidence for the tuning of chalcogen bonds cooperativity by a hydrogen- or lithium-bonding.     

Effects of molecular geometry on liquid crystalline phase behaviour: isotropic-nematic transition

The effects of range and geometry of a simple attractive square-well on the phase diagram of hard ellipsoids and hard spherocylinders is systematically studied using a simple van der Waals type theory. The orientational single particle distribution function is approximated using the Onsager trial function. The quantitative errors introduced by this are thought to be considerably smaller than the use of the van der Waals approximation, which has been shown to give qualitatively correct phase diagrams for similar models. The phase diagrams obtained for hard ellipsoids and hard spherocylinders of aspect ratios ranging between 3 and 10 with a variety of square-well attractions are found to fall into three general types. The first type shows liquid-vapour coexistence and an isotropic-nematic transition, which meet at a liquid-vapour-nematic triple point. The second type shows a marked widening of the isotropic-nematic biphasic region which pre-empts the liquid-vapour coexistence. The final phase diagram shows a strong destabilization of the nematic phase with respect to the isotropic, which results in a shift of the phase transition to higher densities and pressures as the temperature is lowered.     

Towards a unified view of fluids

It has traditionally been believed that, unlike normal fluids whose structural properties are determined primarily by the intermolecular short-range repulsive interactions, the properties of polar and associating fluids are strongly affected by the long-range Coulombic interactions. In the course of investigations to determine the primary driving forces governing the behaviour of various (non-simple) fluids, and hence to gain a deeper understanding of the molecular mechanisms leading to the development of theoretically based simple models and theory, extensive and systematic computer simulations have been performed on typical quadrupolar (carbon dioxide), dipolar (acetone and acetonitrile), and associating (hydrogen fluoride, methanol, and water) fluids using the available realistic effective pair potentials and their variants involving forces of different ranges. In addition to the main structural characteristics (one- and two-dimensional site–site correlation functions, local g factors, and radial slices through the full pair correlation function), the dielectric constants and the thermodynamic properties (internal energy and pressure) of both the homogeneous liquid and supercritical fluid phases, and vapor–liquid equilibria have also been considered. Furthermore, in the case of water, the diffusion coefficient and viscosity have also been considered along with water at the interface. All the obtained results lead to the unambiguous conclusion that the structure, defined in terms of the complete set of site–site correlation functions, for both polar and associating pure fluids is governed by the same molecular mechanism as for normal fluids, i.e. by the short-range interactions (which, however, may be both repulsive and attractive), whereas the long-range part of the electrostatic forces, regardless of their strength, plays only a marginal role and may be treated as a perturbation only. The consequences of these findings for theory and applications are also discussed.     

H2S在Fe(100)面吸附的第一性原理研究

基于密度泛函理论第一性原理, 在广义梯度近似下, 研究了表面覆盖度为0.25 ML (monolayer)时硫化氢分子在Fe(100)面吸附的结构和电子性质, 并与单个硫原子吸附结果进行了对比. 结果表明: 硫化氢分子吸附在B2位吸附能最小为-1.23 eV, 最稳定, B1位吸附能最大为-0.01 eV, 最不稳定; 并对硫化氢分子在B1位和B2位吸附后的电子态密度进行了分析, 也表明了吸附在B2位稳定, 且吸附在B2位后硫化氢分子几何结构变化不大; 将硫化氢中硫原子吸附与单个硫原子吸附的电子性质进行了比较, 发现前者吸附作用非常微弱; 同时对吸附后的Fe(100)面进行了对比, 单个硫原子吸附的Fe(100)面电子态密度出现了一系列峰值且离散分布, 生成了硫化亚铁, 表明在硫化氢环境下, 主要是硫化氢析出的硫原子发生了吸附. 关键词： 第一性原理 Fe(100)表面 吸附能 硫化氢     

低气压条件下氢气潘宁放电的模拟分析

为更好地理解低气压、弱电离条件下潘宁离子源放电过程中离子和电子的动力学行为, 通过建立二维轴对称模型, 采用粒子模拟与蒙特卡罗相结合(PIC/MCC)的方法, 考虑了电子与氢气之间的弹性碰撞、激发、电离以及氢原子、离子之间的弹性碰撞和电荷交换等过程, 对微型氢气潘宁离子源放电和引出过程进行了数值研究. 考察了磁场位形、壁面二次电子发射系数、引出电压和充气压力对放电过程的影响, 得到了实验中难以诊断得到的放电腔内电子与离子数密度分布, 阳极电流、引出极离子电流、单原子氢离子比例和双原子氢离子比例等宏观参数与实验结果相一致. 通过仿真使得对氢气潘宁放电机制的研究从定性过渡到定量, 这对于潘宁离子源的设计和改进具有重要意义. 关键词： 潘宁放电 氢气 粒子模拟 蒙特卡罗     

Advantages and Limitations of Solid Layer Experiments in Muon Catalyzed Fusion

Since the discovery that muonic deuterium at energies near a few eV could travel distances of the order of 1 mm in condensed hydrogen, and in particular that muonic tritium and muonic deuterium could emerge from the surface of a solid hydrogen layer, the advantages of solid targets have enabled the study of several processes important in muon catalyzed fusion. A review of the results is presented, emphasizing the strengths and limitations of the use of solid hydrogen layer targets. This revised version was published online in August 2006 with corrections to the Cover Date.