Gaussian basis sets for molecular applications

The choice of basis set in quantum chemical calculations can have a huge impact on the quality of the results, especially for correlated ab initio methods. This article provides an overview of the development of Gaussian basis sets for molecular calculations, with a focus on four popular families of modern atom‐centered, energy‐optimized bases: atomic natural orbital, correlation consistent, polarization consistent, and def2. The terminology used for describing basis sets is briefly covered, along with an overview of the auxiliary basis sets used in a number of integral approximation techniques and an outlook on possible future directions of basis set design. © 2012 Wiley Periodicals, Inc.     

A correlation between the variable melt flow index and the molecular mass distribution of virgin and recycled polypropylene used in the manufacturing of battery cases

This study looked at establishing a correlation between the variable melt flow index (VMFI) values of molten polypropylene (PP) with different piston-load masses using a standard MFI analyser. The study was done using virgin PP and recycled PP obtained from recycling Pb-acid batteries. The study showed that the results would fit a suitable power function equation where the size of the exponent reflects the increase in flow characteristics of the polymer with increased piston-load mass. The established correlation was then compared to the average molecular weight distribution of virgin PP determined by gel permeation chromatography (GPC). Good agreement was obtained for the range of grades of virgin PP samples that correlated well with the Mark-Houwink power law where the inverse of the MFI (1/MFI) would be proportional to the average molecular weight to the power of 3.4 (Mw^3.4). GPC analysis cannot be effectively used to study recycled PP, where a number of factors can influence the melt flow properties such as fillers, impurities and the presence of polyethylene in the polymer matrix. Instead, a comparative understanding of the flow behaviour of recycled PP to that of virgin PP was done by using the VMFI method to possibly show the dissimilar polymer melt flow behaviour of using virgin and recycled PP material in injection moulding of new battery cases and lids, or when attempting to seal the lid to the battery case during manufacturing.     

Transiting the molecular potential energy surface along low energy pathways: The TRREAT algorithm

The Transition Rapidly exploring Random Eigenvector Assisted Tree (TRREAT) algorithm is introduced to perform searches along low curvature pathways on a potential energy surface (PES). The method combines local curvature information about the PES with an iterative Rapidly exploring Random Tree algorithm (LaValle, Computer Science Department, Iowa State University, 1998, TR98–11) that quickly searches high‐dimensional spaces for feasible pathways between local minima. Herein, the method is applied to identifying conformational changes of molecular systems using Cartesian coordinates while avoiding a priori definition of collective variables. We analyze the pathway identification problem for alanine dipeptide, cyclohexane and glycine using nonreactive and reactive forcefields. We show how TRREAT‐identified pathways can be used as valuable input guesses for double‐ended methods such as the Nudged Elastic Band when ascertaining transition state energies. This method can be utilized to improve/extend the reaction databases that lie at the core of automatic chemical reaction mechanism generator software currently developed to build kinetic models of chemical reactions. © 2013 Wiley Periodicals, Inc.     

宽离子能量检测范围垂直引入反射式飞行时间质谱仪的研制

本实验室研制了国内首台宽离子能量检测范围飞行时间质谱仪。仪器采用紧凑式电子轰击源设计,配合离子透镜系统有效的调制离子流,飞行时间质量分析器采用了离子垂直引入式,双场加速和双场反射以及大尺寸MCP检测装置设计。仪器单离子信号半峰宽约2 ns,仪器分辨率优于1600FWHM,检测实际样品质量范围为1~127 amu(仪器理论质量检测上限优于800 amu),可检测离子能量范围优于2个数量级(3~140 eV)。若该TOF质量分析器与短瞬高压脉冲放电离子源耦合联用,可广泛应用于高能离子束的快速检测,如真空阴极放电对制备薄膜、离子注入材料的表征,导电材料的离子电荷态分布以及离子扩散速度的测定等。     

Liquid crystalline properties of dissymmetric molecules IV. The substituent effect on thermal properties of nematic and smectic A phases in three aromatic ring systems with ester linkages

This paper describes the effect of substituent and ester linkage on smectic properties for some derivatives of 4-R -phenyl 4-(4-octyloxybenzoyloxy)benzoates (1), 4-octyloxyphenyl 4-(4-R-benzyloxy)benzoates (2), 4-(4-octyloxybenzoyloxy)phenyl 4- R -benzoates (3), and 4-R-phenyl 4-octyloxyphenyl terephthalates (4) where R = OCH₃, CH₃, OC₈H₁₇, C8H17, halogens, CF₃, OCF₃, CN, NO2, etc. The thermal properties are discussed in terms of the electrostatic nature of the substituents and the relative orientation of the ester groups with respect to both terminal substituents. The substituent effect on the layer structure of the smectic A phase is also examined by means of a small angle X-ray analysis.     

Optimization of matrix solid-phase dispersion conditions for UV filters determination in biota samples

A low solvent consumption method for the determination of eight ultraviolet (UV) filters, displaying low to medium polarities, in freeze-dried samples of marine bivalves and fish is proposed. Matrix solid-phase dispersion (MSPD) and gas chromatography with mass spectrometry (GC-MS) were used as sample preparation and determination techniques, respectively. This work describes the influence of several parameters (type and amount of dispersant and clean-up sorbents, as well as elution solvent) on the yield and the selectivity of the MSPD extraction. Under optimized conditions, samples (0.5?g) were ground with 2?g of Florisil in a mortar with a pestle and transferred into a polypropylene syringe, which contained 1?g of C18 as clean-up sorbent. Analytes were eluted with 5?mL of acetonitrile. This extract was concentrated to dryness, re-constituted with 1?mL of ethyl acetate and injected in the GC-MS system without any further clean-up. The global average recoveries, measured for three different biota samples, spiked at three different levels (between 50 and 1000?ng?g^?1), ranged from 80% to 101% with associated standard deviations below 10%. The inter-day precision of the method varied from 4% to 15% and the achieved LOQs (defined for a signal to noise ratio of 10) ranged from 4 to 28?ng?g^?1, referred to the freeze-dried matrix. Octocrylene (OCR) was found in some samples of fish and mussels at concentrations between 15 and 20?ng?g^?1, referred to dry mass.     

Asymmetrical flow field-flow fractionation and excitation-emission matrix spectroscopy combined with parallel factor analyses of riverine dissolved organic matter isolated by tangential flow ultrafiltration

Asymmetrical flow field-flow fractionation (AF4) with sequential on-line UV/visible and fluorescence detectors was used to investigate the composition of dissolved organic matter (DOM) in permeate and retentate fractions isolated by tangential flow ultrafiltration (TFF) at various concentration factors (i.e. ratio of initial volume to the retentate volume; CF). The permeation coefficient model, which defines the log-log relationship between DOM in the permeate fractions and CFs, described the permeation behaviour of DOM with regression coefficients r ² > 0.99. The dominance of higher-molecular weight retentate chromophoric DOM (CDOM) observed in TFF was consistent with the results of AF4. The weight-averaged molecular weights (M _w) of the integral permeate and retentate at CF = 20 were determined to be 1160 and 2320 by AF4, respectively, while their molecular weight distributions (MWD) were centered at 1120 and 1600 Da. M _w, MWD, and aromaticity (i.e. ratio of absorbance at 250 and 365 nm; E2/E3) in permeate fractions were altered significantly during the early stages of TFF (CF < 9). These changes, however, were not evident in excitation-emission matrix fluorescence properties as determined using the parallel factor analysis model. The application of AF4 to TFF fractions suggests that the choice of CF may have an important impact on the size distribution and aromaticity of permeate fractions, whereas fluorescence properties appear insensitive to concentration factor. These results suggest that the choice of CF is crucial only in the study of the permeate fraction where similar CF (i.e. > 9) should be used to obtain meaningful comparison among samples.     

Automated analysis of geosmin, 2-methyl-isoborneol, 2-isopropyl-3-methoxypyrazine, 2-isobutyl-3-methoxypyrazine and 2,4,6-trichloroanisole in water by SPME-GC-ITDMS/MS

This paper describes a method of determining the following compounds in water characterised by complex matrices (raw waters and drinking waters): geosmin, 2-methylisoborneol (2-MIB), 2-isobutyl-3-methoxypyrazine (IBM), 2-isopropyl-3-methoxypyrazine (IPM) and 2,4,6-trichloroanisole (TCA). The method is carried out using headspace solid-phase microextraction (HS-SPME) combined with gas chromatography (GC) and ion trap mass spectrometry (ITMS). Several parameters of extraction and desorption were optimised through the use of a Combi PAL autosampler to automate various tasks (temperature extraction, extraction time, stir speed). Quantities of NaCl and the liquid volume/total volume ratio were also optimised. Double fragmentation (tandem MS/MS) was optimised on the target compounds. The method resulted in good linearity obtained for concentrations of 1 to 100?ng?L^?1 and provided detection limits of approximately below 1?ng?L^?1. Good precision (1–8%) was obtained. This method was successfully applied to the analysis of earthy and musty odours in municipal raw source waters with high concentrations of natural organic matter and in the corresponding treated waters. This is the first time MS/MS has been used to analyse odorous compounds in waters destined for human consumption. In addition, the method as developed is simple to use and lends itself to easy interpretation of chromatograms.     

Determination of 61 organic pollutants in drinking water by solid phase extraction followed by liquid and gas chromatography coupled to tandem mass spectrometry: an analytical strategy for a routine laboratory

A method for determination of 61 organic pollutants (polycyclic aromatic hydrocarbons and organochlorine, organophosphorous and organonitrogen pesticides) is proposed. It is based on solid phase extraction (SPE) and subsequent analysis of the extract by liquid and gas chromatography coupled to tandem mass spectrometry. Method validation yielded to the following values: limits of quantification, from 0.005 to 0.020?µg?L^?1; trueness, 95% to 113% and reproducibility (as percent relative standard deviation), 2% to 15%. Additionally, the method performed well in various proficiency tests.     

Epoxide Opening versus Silica Condensation during Sol–Gel Hybrid Biomaterial Synthesis

Hybrid organic–inorganic solids represent an important class of engineering materials, usually prepared by sol–gel processes by cross‐reaction between organic and inorganic precursors. The choice of the two components and control of the reaction conditions (especially pH value) allow the synthesis of hybrid materials with novel properties and functionalities. 3‐Glycidoxypropyltrimethoxysilane (GPTMS) is one of the most commonly used organic silanes for hybrid‐material fabrication. Herein, the reactivity of GPTMS in water at different pH values (pH 2–11) was deeply investigated for the first time by solution‐state multinuclear NMR spectroscopic and mass spectrometric analysis. The extent of the different and competing reactions that take place as a function of the pH value was elucidated. The NMR spectroscopic and mass spectrometric data clearly indicate that the pH value determines the kinetics of epoxide hydrolysis versus silicon condensation. Under slighly acidic conditions, the epoxy‐ring hydrolysis is kinetically more favourable than the formation of the silica network. In contrast, under basic conditions, silicon condensation is the main reaction that takes place. Full characterisation of the formed intermediates was carried out by using NMR spectroscopic and mass spectrometric analysis. These results indicate that strict control of the pH values allows tuning of the reactivity of the organic and inorganic moities, thus laying the foundations for the design and synthesis of sol–gel hybrid biomaterials with tuneable properties.