Wave propagation across a finite heterogeneous interphase modeled as an interface with material properties

Mechanical problems involving an interphase between two well-defined, and eventually different, materials are of interest. The aim of this paper is to present a simplified model that, for low frequency regime, is appropriate for this situation: an interface model with elastic and inertial properties. We present, together with the equations of motion, an identification procedure that is valid for any mass density profile along the thickness of the interphase. For evaluating the accuracy of the model, computations of the reflection coefficients in some relevant cases are shown. Besides, a finite element method is used as a benchmark for both the high and low frequency regimes. It is worth to be noted that the numerical test has been inspired by the problem of the interphase that is formed at the bone-implant boundary.     

Stimuli-Responsive Purely Organic Room-Temperature Phosphorescence Materials

This Minireview summarizes the recent progress of stimuli-responsive purely organic phosphorescence materials. Organic phosphorescence is closely related to the intermolecular interactions, because such interactions are beneficial to promote spin orbital coupling (SOC) and boost intersystem cross (ISC) efficiency and finally are conducive to satisfactory phosphorescence. It is found that the intermolecular interactions, which are essential for organic phosphorescence, are easily disturbed by external stimuli such as mechanical force, photon, acid, chemical vapor, leading to the luminescence change. According to this principle, various purely organic phosphorescence materials sensitive to external stimuli have been developed. This Minireview categorizes reported stimuli-responsive purely organic phosphorescence materials on the basis of different stimuli, including mechanochromism, mechanoluminescence, photoactivity, acid-responsiveness and other stimuli. Some prospective strategies for constructing stimuli-responsive purely organic phosphorescence molecules are provided.     

Energy flow along the medium-induced parton cascade

We discuss the dynamics of parton cascades that develop in dense QCD matter, and contrast their properties with those of similar cascades of gluon radiation in vacuum. We argue that such cascades belong to two distinct classes that are characterized respectively by an increasing or a constant (or decreasing) branching rate along the cascade. In the former class, of which the BDMPS, medium-induced, cascade constitutes a typical example, it takes a finite time to transport a finite amount of energy to very soft quanta, while this time is essentially infinite in the latter case, to which the DGLAP cascade belongs. The medium induced cascade is accompanied by a constant flow of energy towards arbitrary soft modes, leading eventually to the accumulation of the initial energy of the leading particle at zero energy. It also exhibits scaling properties akin to wave turbulence. These properties do not show up in the cascade that develops in vacuum. There, the energy accumulates in the spectrum at smaller and smaller energy as the cascade develops, but the energy never flows all the way down to zero energy. Our analysis suggests that the way the energy is shared among the offsprings of a splitting gluon has little impact on the qualitative properties of the cascades, provided the kernel that governs the splittings is not too singular.     

Like‐Charge Attraction: A Combined Electrostatic–Hydrodynamic Approach

Abstract

This article discusses the like‐charge attraction of colloidal spheres close to a charged plate and compares results produced by an electrostatic and a hydrodynamic model with experimental data. Hydrodynamic coupling is shown to be the dominating effect, while the electrostatic influence may often be neglected. Some observations, however, can be explained only by means of a combined electrostatic–hydrodynamic model, which is derived in this work. The combined model is able to predict not only the attractive force between particles of similar charge close to a charged plate but also the change to a purely repulsive force once the sphere‐plate distance is further reduced. This prediction matches qualitatively results of experiments reported in the literature.     

Water PMF for predicting the properties of water molecules in protein binding site

Water is an important component in living systems and deserves better understanding in chemistry and biology. However, due to the difficulty of investigating the water functions in protein structures, it is usually ignored in computational modeling, especially in the field of computer‐aided drug design. Here, using the potential of mean forces (PMFs) approach, we constructed a water PMF (wPMF) based on 3946 non‐redundant high resolution crystal structures. The extracted wPMF potential was first used to investigate the structure pattern of water and analyze the residue hydrophilicity. Then, the relationship between wPMF score and the B factor value of crystal waters was studied. It was found that wPMF agrees well with some previously reported experimental observations. In addition, the wPMF score was also tested in parallel with 3D‐RISM to measure the ability of retrieving experimentally observed waters, and showed comparable performance but with much less computational cost. In the end, we proposed a grid‐based clustering scheme together with a distance weighted wPMF score to further extend wPMF to predict the potential hydration sites of protein structure. From the test, this approach can predict the hydration site at the accuracy about 80% when the calculated score lower than ?4.0. It also allows the assessment of whether or not a given water molecule should be targeted for displacement in ligand design. Overall, the wPMF presented here provides an optional solution to many water related computational modeling problems, some of which can be highly valuable as part of a rational drug design strategy. © 2012 Wiley Periodicals, Inc.     

Interactions between apolar,basic and acidic model oils and a calcite surface

Abstract

In this study, the atomic force microscopy colloidal probe technique was employed to investigate the interaction between apolar, basic and acidic model oil probes and a calcite surface in solutions containing different concentrations of NaCl, CaCl₂ and Na₂SO₄. In the presence of SO₄^2?, hydration and structural forces were observed between apolar model oil probes and a calcite surface on approach. Relatively low adhesion forces were observed between the basic model oil probes and the calcite surface, while higher adhesion forces were observed between the acidic model oil probes and the calcite surface. Furthermore, the adhesion forces between the basic model oil probes and the calcite surface significantly increased in the presence of SO₄^2?, while the adhesion force between the acidic model oil probes and the calcite surface decreased in the presence of Ca²⁺ or SO₄^2?. The differences in the adhesion forces are related to electrostatic attraction and ion bridging forces between the model oil probes and the calcite surface.     

Modification of Surface Forces by Metal Ion Adsorption

Abstract

Sorption of ions may lead to variations in interparticle forces and, thus, changes in the stability of colloidal particles. Chemical interactions between metal ions and colloidal particles modify the molecular structure of the surface, the surface charge, and the electrical potential between colloidal particles. These modifications to the surface and to the electrical double layer due to metal ion sorption are reflected in the interaction force between a particle and another surface, which is measured in this study by atomic force microscopy (AFM). Specifically, AFM is used to investigate the sorption of copper ions from aqueous solutions by silica particles. The influence of metal ion concentration and solution ionic strength on surface forces is studied under transient conditions. Results show that as the metal ion concentration is decreased, charge reversal occurs and a longer period of time is required for the system to reach equilibrium. The ionic strength has no significant effect on sorption kinetics. Furthermore, neither metal concentration nor ionic strength exhibits any effect on sorption equilibria, indicating that for the experimental conditions used in this study, the surface sites of the silica particle are fully occupied by copper ions.     

Friccohenics of Continuum and Non‐Continuum Models for Liquid Flow Applied for Heteromolecular Interaction of DNA Bases and Sugars Estimated with Mansingh Equation

Newtonian and non‐Newtonian liquids widely characterize continuum and non‐continuum models for flows, thus, viscous (continuum) and drop wise (non‐continuum) flows of water and aqueous nucleotides (2‐deoxy adenosine‐DOA, thymidine‐TMD) and nucleosides (guanosine monophosphate‐GMP, adenosine triphosphate‐ATP) with integral unites‐2‐deoxy ribose‐DOR (referred as DNA bases and sugars) have been studied with Survismeter. Time data for viscous (t and drop wise (dt) flows along with drop counts (n) for aqueous solutions of 0.4–1.4 millimol (mm) DNA base and sugars with survismetere at 288.15, 293.15, and 298.15 K are measured for viscosities and surface tension, respectively. The t and n are fitted in Mansingh equation for Friccohesity (σ) calculation that determines dipole moment (µ). The t, dt, and n data are measured for water from 15 to 70°C at an interval of 5°C for standard equation for dipole moment calculation. The t, dt and n values decrease with temperature where the σ is directly proportional to μ values with slight increase with compositions and decreases with temperatures. A continuous decrease in μ values with compositions is noted with slightly higher decrease at 288.15 with both millimol and temperature. The higher decrease with temperatures weakens Coulombic forces ((q₁ · q₂)/r², with charges q₁ and q₂, and radii r)) where σ increase.