Second hydrogen atom abstraction by molecular ions

We report the observation of a new physical phenomenon of the addition of 2 hydrogen atoms to molecular ions thus forming [M + 2H]⁺ ions. We demonstrate such second hydrogen atom abstraction onto the molecular ions of pentaerythritol and trinitrotoluene (TNT). We used both gas chromatography mass spectrometry (GC‐MS) with supersonic molecular beam (SMB) with methanol added into its make‐up gas and electron ionization (EI) liquid chromatography mass spectrometry (LC‐MS) with SMB with methanol as the LC solvent. We found that the formation of methanol clusters resulted upon EI in the formation of dominant protonated pentaerythritol ion at m/z = 137 plus about 70% relative abundance of pentaerythritol molecular ion with 2 additional hydrogen atoms at m/z = 138 which is well above the 5.7% natural C¹³ isotope abundance of protonated pentaerythritol. Similarly, we found an abundant protonated TNT ion at m/z = 228 and a similar abundance of TNT molecular ion with 2 additional hydrogen atoms at m/z = 229. Upon the use of deuterated methanol (CD₃OD) as the solvent, we observed an abundant m/z = 231 (M + 2D)⁺ of TNT with 2 deuterium atoms. We found such abundant second hydrogen atom abstraction with butylglycolate and at low abundances in dioctylphthalate, Vitamin K3, phenazine, and RDX. At this time, we are unable to report the magnitude and frequency of occurrence of this phenomenon in standard electrospray LC‐MS. This observation could have important implications on the provision of elemental formula from mass spectra that are involved with protonated molecules. Accordingly, while accurate mass measurements can serve for the generation of elemental formula, their further support and improvement via isotope abundance analysis are questionable. Consequently, if a given compound can be analyzed by both GC‐MS and LC‐MS, its GC‐MS analysis can be superior for the provision of accurate elemental formulae if its EI mass spectrum exhibits abundant molecular ions such as with GC‐MS with SMB (also known as cold EI).     

Protonation of the acyclic tetraaza metallocomplex of gold(III) [Au(C9H19N4)]2+ in aqueous solution. Synthesis and crystal and molecular structure of [Au(C9H20N4)](H5O2)(ClO4)4

Protonation equilibrium has been studied for the acyclic gold(III) tetraaza metallocomplex [AuB]²⁺ [B = N, N′-bis(2-aminoethyl)-2,4-pentanediiminato(1−)] in aqueous solution. The synthetic procedure is described. The crystal and molecular structure of the protonated form of the [AuHB](H₅O₂)(ClO₄)₄ complex has been determined. Monoclinic crystals with unit cell dimensions a = 11.964(2) Å, b = 13.789(3) Å, c = 15.496(3) Å, β = 109.00(3)°, V = 2417.1(8) ų, Z = 4, ρcalc = 2.243 g/cm³, space group P2₁/n. The structure is built of nearly planar [Au(C₉H₂₀N₄)]³⁺ complex cations, (H₅O₂)⁺ cations, and [ClO₄]⁻ anions. The gold atom coordinates four nitrogen atoms of the ligand, forming a square plane. The six-membered chelate ring of the ligand is protonated at the central β-carbon atom and contains imine C=N bonds. The oxygen atoms of the perchlorate ions are hydrogen bonded to the (H₅O₂)⁺ dihydroxonium ion and to the nitrogen atoms of the NH₂ groups of the [AuHB]³⁺ cation. Original Russian Text Copyright ? 2005 by V. A. Afanasieva, L. A. Glinskaya, R. F. Klevtsova, and I. V. Mironov __________ Translated from Zhurnal Strukturnoi Khimii, Vol. 46, No. 5, pp. 909–915, September–October, 2005.     

Anionische Antimon(III)-Fluorokomplexe mit protonierten Azakronenethern als Gegenionen. Strukturen und Mößbauerspektren von [H2cyclam]2[Sb4F16] · 2 H2O, [H4cyclam][Sb2F10] · 2 HF und [H4(tetramethyl)cyclam]2[Sb4F15][HF2][F]4 (cyclam = 1,4,7,11-Tetraazacyclotetradecan)

Anionic Antimony(III) Fluoro Complexes with protonated Azacrownethers as Counterions. Crystal Structures and Mößbauer Spectra of [H₂cyclam]₂[Sb₄F₁₆] · 2H₂O, [H₄cyclam][Sb₂F₁₀] · 2 HF, and [H₄(tetramethyl)cyclam]₂[Sb₄F₁₅][HF₂][F]₄ (cyclam = 1,4,7,11-Tetraazacyclotetradecane) The title compounds are formed by reaction of SbF₃ with the respective azacrownether. [H₂cyclam]₂[Sb₄F₁₆] · 2 H₂O contains tetrameric anions which weakly associate to chains. The [H₂cyclam]²⁺ ions possess an unusual conformation due to intramolecular hydrogen bonds. [H₄cyclam][Sb₂F₁₀] · 2HF contains the dimeric hitherto unknown [Sb₂F₁₀]^4? ion; two HF molecules are attached to it by hydrogen bonds. The structure of [H₄(tetramethyl)cyclam]₂[Sb₄F₁₅][HF₂][F]₄ is made up of the two dimensional polymeric [HSb₄F₁₇]^4? anion. The tetra-protonated tetramethylcyclam ions form host-guest complexes with fluoride ions.     

Physical image vs structure relation: part 12 – structure of 2,2,5,5‐tetramethyl‐dihydro‐furan‐3‐one oxime and its protonated forms through isomerization and NMR spectra

The study of an isomeric A / B mixture of the title oxime 1 , by photolytic or thermal E,Z‐isomerization and NMR measurement including ¹H{¹H}‐NOE difference spectra, led to assignment of the E configuration to its predominating form A . The ¹H/¹³C data were interpreted in terms of steric overcrowding of both forms, especially of the thermolabile photoproduct B . Four classical (empirical) NMR methods of elucidating the oxime geometry were critically tested on these results. Unexpected vapor‐phase photoconversion A → B in the window glass‐filtered solar UV and spectroscopic findings on their protonated states were discussed, as well. The kinetically controlled formation of the N‐protonated species (Z)‐ 5 ⁺ was proved experimentally. In addition, some ¹H NMR assignments reported for structurally similar systems were rationalized ( 3 and 4 ) or revised ( 1 and 7–9 ) with the GIAO‐DFT(B3LYP) and/or GIAO‐HF calculational results. Copyright © 2007 John Wiley & Sons, Ltd.     

Synthesis and Crystal Structure of a Two-dimensional Sil-ver(I)-Iron(III) Heteronuclear Coordination Polymer:{[Ag_4Fe_2(SCN)_(12)(H_2O)_2][(inaH)_2(H_2O)_2]}_n

Introduction Molecules containing different kinds of metal ions play an important role in molecular magnetism.1-3 So considerable attention has been paid to synthesizing heteronuclear complexes.1-4 As a potential bridging ligand, thiocyanate can coordinate to a harder metal center and softer ones with N and S atoms respectively. The complexes of thiocyanate and representative hard acidFe(III) ions usually have a six-coordinate octahe-dral structure such as [Fe(SCN)n]3-n and (Bu4N)4[Ag2-F…     

Synthesis and Crystal Structure of a Two-dimensional Silver（Ⅰ）-Iron（Ⅲ） Heteronuclear Coordination Polymer： {[Ag4Fe2（SCN）12（H2O）2] [（inaH）2（H2O）2]}n

The 2‐D heteronuclear coordination polymer {[Ag₄Fe2(SCN)₁₂(H₂O)₂] (inaH)₂(H₂O)₂}_n (1) (inaH is the abbreviation of protonated isonicotinic acid) with chemical formula C₂₄Ag₄Fe₂N₁₄O₈S₁₂ has been synthesized and characterized by single crystal X‐ray diffraction, elemental analysis and IR spectroscopy. The Ag₂S₂ rings connect two kinds of octahedral geometries of Fe(III) ions, [Fe(NCS)₆]^3– and Fe(H₂O)₂(NCS)₄]^? units with bridging thiocyanate ions leading to 2‐D [Ag₄Fe₂(SCN)₁₂(H₂O)₂^2– anion framework. Four kinds of rings including the unprecedented thirty‐two membered Ag₄Fe₄(SCN)₈ rings share comers or edges in the 2‐D anion layer structure. All thiocyanates coordinate to the metal ions according to the HSAB principle with N atoms binding to the Fe(III) ions and with S atoms binding to Ag(I) ions. Pronoated ina cations stabilize the layer structure as counter ions and hydrogen bonds were formed within the pronoated in a cations dimer and between the dimers and the lattice waters. Crystal data: M_r= 1560.44, triclinic, P1, a=0.76082(1) nm, b=0.9234 nm, c= 1.85611(4) nm, a= 103.0170(10)°, β=93.7780(10)°, y=97.4080(10)°, V= 1.25385(3) nm³, Z=1, μ(Mo Kα)=2.650 mm^?1, D_c,=2.067 g · cm^?3, F(000)=758, R₁=0.0412. wR₂=0.1003.     

Doping and metallic‐support effect evidenced on SERS spectra of polyaniline thin films

Surface‐enhanced Raman scattering (SERS) is a process with origins, electromagnetic and chemical. The electromagnetic enhancement consists of the excitation of surface plasmons in the metallic support of the thin film. With only the electromagnetic enhancement mechanism, the surface spectra should not differ from volume Raman spectra. However, between SERS and volume Raman spectra, there are differences resulting from the chemical reactions taking place at the polymer/metal interface, intermediated by solvent molecules, that finally depend on the types of polymers and metallic supports. Polyaniline (PAN) is an excellent material to emphasize the chemical component of SERS. This is due to its particular structure with a repeating unit that contains two entities at different weights—a reduced state and an oxidized state–that, in turn, react differently with a metallic substrate. SERS spectra depend on the oxidizing properties of the metal surface, which involves an intermediate compound of the types Ag₂O and Au₂O₃ when N‐methyl‐2‐pyrrolidinone is used as the solvent. This article presents new results concerning the surface chemical effects that produce variations of the PAN SERS spectra. The SERS spectra of the PAN emeraldine base (PAN‐EB) layered on Au support are characterized by a semiquinoid structure that we believe is induced on the intermediate compound Au₂O₃. In the presence of H₂SO₄, the SERS spectra change gradually as the degree of acid protonation doping increases. The SERS spectra of the fully protonated PAN‐EB are identical to those obtained on PAN emeraldine salt (PAN‐ES) synthesized by cyclic voltammetry in an acid medium and are invariable with the type of metallic support. The SERS spectra show that the emeraldine salt can be partially or totally deprotonated with water or NH₄OH. The deprotonation is complete for the Ag support and partial for the Au support. The SERS spectra of the fully protonated PAN‐EB are characterized by a double band with maxima at about 1330 and 1370 cm⁻¹. Although the generation process of positive charge on the macromolecular chain of PAN‐EB doped in the presence of (C₄H₉)₄NBF₄ is similar to that due to protonic acid doping, involving cation addition (C₄H or H⁺ ions, respectively) in SERS spectra, the complex band situated at about 1330–1370 cm⁻¹ no longer appears. The doping of PAN‐EB with FeCl₃ produces two polymer forms: a salt type characterized by a protonated structure similar to that found for PAN‐ES and a base type similar to the leucoemeraldine form. © 2000 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 38: 2599–2609, 2000     

Anab initio quantum-chemical study of proton addition to F-, Ch3-, and CF3-substituted ethylene derivatives

Protonated forms of the molecules of ethylene derivatives with the general formula C₂X₂Y₂ (X=Y=H) (1), F (2), CH₃ (3) CH₃ (4); X=F, Y=H:cis-(5)trans- (6)) were calculated by theab initio MP2/6-31 G^* method with full geometry optimization. The minima and saddle points located on the potential energy surface (PES) of the protonated ethylene molecule correspond to the stationary states and transition states of proton migration, respectively. The stationary states are characterized by a nonclassical geometry of carbocations similar to that of π-complexes, whereas the transition states have a classical structure. Unlike1, the carbocations of molecules2–6 have the classical structure. The saddle points on the PES of the ethylene derivatives correspond to the structures of the π-complex type, which are the transition states of proton migration between the C atoms of the ethylene bond. The barrier to rotation about, the C−C bond depends essentially on the substituent nature. Published inIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 1333–1337, August, 2000.     

The fleeting existence of the classical vinyl cation structure

ABSTRACT

Using a hyperbolic function type-potential and Schrödinger’s equation transformed into a hypergeometric differential equation along with the results presented from an ab-initio CASSCF(10,11)/cc-pVTZ calculation we show that the potential well of the classical vinyl cation minimum is incapable of supporting a zero point vibrational motion for the protons. Furthermore, as opposed to the previously found transition state linking the classical and bridged vinyl cations, we suggest that it becomes a transition state for the interconversion or tautomerization of the bridged vinyl cation.     

Bioactive plasma-polymerized bipolar films for enhanced endothelial cell mobility

A facile approach to a highly bio-active interface material is reported. XPS reveals that polar entities exist at the interface between PPAam and PPAac nanolayers. They induce strong dipolar orientation polarizability and cause the redistribution of charges, which results in a remarkable increase of polar surface energy and hydrophilicity of the multistack bipolar films. In particular bipolar films with amine groups on their outermost surface show strongly enhanced cellular mobility. The attachment, adhesion, proliferation, migration, and coverage of ECs are significantly enhanced on such films. They are therefore promising as vascular implant materials, and could have applications as coating materials for tissue engineering.