Parameterization of peptide 13C carbonyl chemical shielding anisotropy in molecular dynamics simulations.

NMR chemical shielding anisotropy (CSA) relaxation is an important tool in the study of dynamical processes in proteins and nucleic acids in solution. Herein, we investigate how dynamical variations in local geometry affect the chemical shielding anisotropy relaxation of the carbonyl carbon nucleus, using the following protocol: 1) Using density functional theory, the carbonyl (13)C' CSA is computed for 103 conformations of the model peptide group N-methylacetamide (NMA). 2) The variations in computed (13)C' CSA parameters are fitted against quadratic hypersurfaces containing cross terms between the variables. 3) The predictive quality of the CSA hypersurfaces is validated by comparing the predicted and de novo calculated (13)C' CSAs for 20 molecular dynamics snapshots. 4) The CSA fluctuations and their autocorrelation and cross correlation functions due to bond-length and bond-angle distortions are predicted for a chemistry Harvard molecular mechanics (CHARMM) molecular dynamics trajectory of Ca(2+)-saturated calmodulin and GB3 from the hypersurfaces, as well as for a molecular dynamics (MD) simulation of an NMA trimer using a quantum mechanically correct forcefield. We find that the fluctuations can be represented by a 0.93 scaling factor of the CSA tensor for both R(1) and R(2) relaxations for residues in helix, coil, and sheet alike. This result is important, as it establishes that (13)C' relaxation is a valid tool for measurement of interesting dynamical events in proteins.     

XPS and XAES analysis of copper,arsenic and sulfur chemical state in enargites

Enargite, a copper arsenic sulfide with the formula Cu₃AsS₄ is of environmental concern due to its potential to release toxic arsenic species. The oxidation and dissolution of enargite are governed by the composition and chemical state of the outermost surface layer. Qualitative and quantitative analysis of the enargite surface can be initially obtained on the basis of X‐ray photoelectron spectroscopy (XPS) binding energy and intensity data. However, a more precise determination of the chemical state of the principal elements of enargite (copper, arsenic and sulfur) in the altered surface layer and in the bulk of the mineral requires a combined analysis based on XPS photoelectron lines and the corresponding X‐ray excited Auger lines. On the basis of results obtained on natural and synthetic enargite samples and on standards of sulfides and oxides, the Auger parameter α′ of different compounds was calculated and the Wagner chemical state plots were drawn for arsenic, copper and sulfur. Arsenic in enargite is found to be in a chemical environment similar to that of arsenides or elemental arsenic, whereas copper in enargite is in a chemical state that corresponds to copper sulfide, Cu₂S, for all samples irrespective of surface treatment (natural or freshly cleaved). Only sulfur changed from a chemical state similar to that of copper or iron sulfide in freshly cleaved samples to another state in natural enargite in the as‐received state. Thus, it is the sulfur atom at the surface of enargite that is most susceptible to changes in the enargite surface state and composition. A more detailed interpretation of this behavior, based on differences in the initial and final state effects, is proposed here. The concept of Auger parameter and chemical state plot, used here for the first time for investigating enargite, has proved to be a method to unambiguously assign the chemical state of the principal elements copper, arsenic and sulfur in these minerals. Copyright © 2006 John Wiley & Sons, Ltd.     

纳米TiO2膜用于光催化氧化测定化学需氧量的研究

A photocatalytic oxidation method for determination of chemical oxygen demand （COD） using nano-TiO2 film, based on the use of a nano-TiO2-Ce（SO4）2 system and electrochemical detection, was proposed. The technique was originated from the direct determination of the Ce（Ⅲ） concentration change resulting from photocatalytic oxidation of organic compounds. Ce（Ⅲ）, which was produced by photocatalytic reduction of Ce（SO4）2, could be measured at a multi-walled carbon nanotubes （MWNT） chemically modified electrode （CME）. The COD values by this method were calculated from the differential pulse voltammetry （DPV） current of Ce（Ⅲ） at the CME. Under the optimal operation conditions, the detection limit of 0.5 mg·L^-1 COD with the linear range of 1-600 mg·L^-1 was achieved. This method was also applied to determination of various COD of ground water and wastewater samples. The resuits were in good agreement with those from the conventional COD methods, i.e., permanganate and dichromate ones.     

Chemischer Transport von Cr2O3 mit CrI3/I2 – Experimente und Modellrechnungen zur Beteiligung von CrOI2,g

On the Chemical Transport of Cr₂O₃ with CrI₃/I₂ – Experiments and Model-Calculations for Participation of CrOI_2,g Gaseous chromium oxyiodides that were unknown up to now cause the migration of Cr₂O₃ in the temperature gradient 1 000°C→900°C when iodine (e. g. 0.1 mmol/ml) and CrI₃ is added (eq. (1)). Transport agent for Cr₂O₃ is gaseous CrI₄. With a smaller concentration of iodine (D(I₂) ? 0.016 mmol/ml) and lower temperatures (e.g. T? = 850°C) the influence of H₂O (from the wall of the silica ampoule) becomes more important. Under these conditions the transport of Cr₂O₃ is a result from the endothermic reactions (2), (3) and (4). H_2,g has on the basis of the decomposition of HI_g a positive difference of the solubility and H_2,g should not to be considered as a transport agent. Because of the range of equilibrium-values the reaction 4 has to be taken into consideration. Estimated value of the enthalpie for CrOI_2,g is fixed more precisely by thermodynamic model calculation to Δ_fH°₂₉₈(CrOI_2,g) = ?51.4 kcal/mol. The estimated limit of error for the enthalpie of formation is smaller than ± 5 kcal/mol. Without an addition of CrI₃ is in the system Cr₂O₃/I₂ a migration of Cr₂O₃ not observable.     

Perfluoropoly-ether/peroxide compounds: spectroscopic studies and quantum chemical calculations

Perfluoropolyethers (PFPEs) are a class of high performance materials used in a wide range of applications (refrigeration, lubrication, semiconductor industry, etc.). PFPEs containing peroxidic units are intermediate materials for the preparation of commercial end products. In this work we study the spectroscopic properties of ether and peroxides linkages in this class of compounds; nuclear magnetic resonance (NMR) spectra are discussed, FT-Raman data presented. Quantum chemical calculations on model molecules were used as a tool for the interpretation of the Raman experimental data and physical-chemical properties.     

Reduced parabolic model for radical addition reactions

The transition state of addition of free radicals and atoms to multiple bonds is considered as a result of intersecting of two parabolic potential curves. One of them characterizes the stretching vibration of the attacked multiple bond, and another curve characterizes the stretching vibration of the bond formed in the transition state. The force constant of the latter is calculated by an empirical equation that correlates the force constant with the bond dissociation energy. In the framework of this model, the thermally neutral activation energy (E _e0) and the elongation of the attacked and formed bonds (r _e) in the transition state were calculated from the experimental data (activation energy (E _e) and enthalpy of reaction (H _e)) for the addition of an H atom and methyl, alkoxyl, aminyl, triethylsilyl, and peroxyl radicals to the C=C bond and the addition of H and CH₃ to the C=O and CC bonds. Analysis of the data obtained showed that E _e0 depends linearly on the |H _e| + E_e sum, i.e., E_e0/kJ mol^–1 = 14.2 + 0.61 · (E_e – H _e), and the bond elongation in the transition state for addition of the most part of radicals to ethylene and acetylene vary within (0.65–0.87)·10_–10 m. The factors affecting the activation energy of the radical addition reactions are discussed.Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 1542–August, 2004.     

钛硅分子筛的结构表征及催化性能研究

以ＴＰＡＢｒ为模板剂，氨水等为碱源合成了钛硅分子筛ＴＳ－１，并利用ＸＲＤ，ＩＲ，元素分析，ＵＶ－ＶＩＳ，热分析等手段对合成的分子筛进行了表征，通过丙烯环氧化反应合成的ＴＳ－１催化性能。结果结果，ＴＳ－１凝胶与产品的硅钛与基本一致；随着硅钛比的降低，ＴＳ－１由单斜晶系过渡为正交晶系，在硅钛比为１２９－１６．７的范围内，随着进入骨架的钛量增加，单胞体积增大；     

Kinetics and mechanism of reaction of cis-α,β-dinitrostilbene with morpholine

Reaction of cis-,-dinitrostilbene (substrate) with morpholine (reagent) in n-hexane leads to cis--nitro--morpholinostilbene (end product). The process is of first order with respect to the substrate and second order with respect to the reagent. Possible reaction mechanisms are analyzed, and it is established that the following are most probable on the basis of kinetic patterns and stereochemistry: development of a charge transfer complex having a hydrogen bond between the substrate nitro group and reagent amino group; reaction of the complex with a second reagent molecule and formation of a carbanion (this stage determines the overall reaction rate); and detachment of a nitrite ion from the nitrocarbanion and its protonation to form the end product.N. N. Semenov Institute of Chemical Physics, Russian Academy of Sciences, 117977 Moscow. A. N. Nesmeyanov Institute of Heteroorganic Compound, Russian Academy of Sciences, 117813 Moscow. Translated from Izvestiya Akademii Nauk, Seriya Khimicheskaya, No. 1, pp. 78–83, January, 1992.     

Quantum chemical models of alkali metal hydroxide-water-dimethylsulfoxide superbasic media (MOH-H<Subscript>2</Subscript>O-DMSO,M = Li,Na, K)

Models of alkali metal hydroxide-water-dimethylsulfoxide superbasic media have been constructed using Hartree Fock and DFT (B3LYP) quantum chemical methods; the structure and energies of anion complexes are considered. The hydroxide anion in the models is stabilized as complexes of OH^?·H₂O and OH^?· 2H₂O types.     

Identification of micro-scale calorimetric devices

Micro-calorimetric devices using Si-based sensors are very useful for the study of gas–solid reactions, in which very low mass of reactants are necessary. But in fact the consequence of using flat detectors is an increase of the uncertainty in the measured energy. In this work a calorimetric gas sensor based on Xensor chip is analysed studying the local x–y contributions of dissipation to the sensitivity related to the value in the centre. We study also the effects of the gas-flow on the sensitivity, comparing the results obtained with two Xensor type chips. Finally we carry out a deeper analysis of the x–y effects on the calorimetric detector for dissipations in the reactant shell extremely close to the detector surface to visualize the link between the power density distribution and the output signal.