Conformational studies of 3,4-dideoxy furanoid sugar amino acid containing analogs of the receptor binding inhibitor of vasoactive intestinal peptide

Conformational analysis of vasoactive intestinal peptide (VIP) receptor binding inhibitor Leu¹-Met²-Tyr³-Pro⁴-Thr⁵-Tyr⁶-Leu⁷-Lys⁸1 by various NMR techniques and constrained molecular dynamics (MD) simulation studies revealed that the molecule had a turn structure involving its Tyr³-Pro⁴-Thr⁵-Tyr⁶ moiety with intramolecular hydrogen bond between Tyr⁶NH→Tyr³CO. In order to mimic the structure of 1, peptidomimetic analogs 2-4 were synthesized using conformationally constrained scaffolds of 3,4-dideoxy furanoid sugar amino acids (2S,5R)-ddSaa1 5 and its enantiomer (2R,5S)-ddSaa2 6. All these analogs displayed well defined three-dimensional structures akin to that found in 1. Peptides 2 and 3, which differed only in the sugar amino acid stereochemistry, show propensity of structures with identical intramolecular hydrogen bonds between ThrNH→MetCO. A similar structure with a hydrogen bond between TyrNH→MetCO was observed in 4.     

Applicability of the H NMR chemical shifts computed by the ab initio/GIAO-HF methodology to the study of geometrical features of Zn-porphyrin dimers

Several porphyrin dimers have been newly designed and synthesized to construct assemblies with 1,4-diazabicyclo[2.2.2]octane (DABCO) as a bidentate binding ligand. Semi empirical (AM1) and ab initio calculations have been used to study the assemblies generated by the organization of dimers and DABCO, including the computation of ¹H NMR complexation-induced chemical shifts using the ab initio/GIAO methodology. The diagnostic capacity of the theoretical method has been applied to explain experimental results and geometrical features of the complexes.     

Crown compounds for anions. Sandwich complex of cyclic trimeric perfluoro-o-phenylenemercury with [B12H11SCN]2– anion

The reaction of cyclic trimeric perfluoro-o-phenylenemercury (o-C₆F₄Hg)₃ (1) with the polyhedral [B₁₂H₁₁SCN]^2– anion in THF at 20 °C affords the {[(o-C₆F₄Hg)₃](B₁₂H₁₁SCN)}^2– (4) and {[(o-C₆F₄Hg)₃]₂(B₁₂H₁₁SCN)}^2– (5) complexes. Complex 5 was isolated as the tetrabutylammonium salt. X-ray diffraction analysis showed that this complex has a bent-sandwich structure in which the [B₁₂H₁₁SCN]^2– anion is located between the planes of two molecules 1 and is coordinated to both these molecules through B—H—Hg bridges and S—Hg bonds. The stability constants of complexes 4 and 5 in THF (20 °C), which were determined from the IR spectroscopic data, are 16 L mol^–1 and 992 L² mol^–2, respectively.     

Multiple polypeptide forms observed in two-dimensional gels of Methylococcus capsulatus (Bath) polypeptides are generated during the separation procedure

We have examined two-dimensional electrophoresis (2-DE) gel maps of polypeptides from the Gram-negative bacterium Methylococcus capsulatus (Bath) and found the same widespread trains of spots as often reported in 2-DE gels of polypeptides of other Gram-negative bacteria. Some of the trains of polypeptides, both from the outer membrane and soluble protein fraction, were shown to be generated during the separation procedure of 2-DE, and not by covalent post-translational modifications. The trains were found to be regenerated when rerunning individual polypeptide spots. The polypeptides analysed giving this type of trains were all found to be classified as stable polypeptides according to the instability index of Guruprasad et al. (Protein Eng. 1990, 4, 155-161). The phenomenon most likely reflects conformational equilibria of polypeptides arising from the experimental conditions used, and is a clear drawback of the standard 2-DE procedure, making the gel picture unnecessarily complex to analyse.     

Polymerization of methyl methacrylate by 2‐pyrrolidinone and n‐dodecyl mercaptan

The bulk polymerization of methyl methacrylate initiated with 2‐pyrrolidinone and n‐dodecyl mercaptan (R‐SH) has been explored. This polymerization system showed “living” characteristics; for example, the molecular weight of the resulting polymers increased with reaction time by gel permeation chromatographic analysis. Also, the polymer was characterized by Fourier transform infrared spectroscopy, ¹H NMR, and ¹³C NMR techniques. The polymer end with the iniferter structures was found. By the initial‐rate method, the polymerization rate depended on [2‐pyrrolidinone]^1.0 and [R‐SH]⁰. Combining the structure analysis and the polymerization‐rate expression, a possible mechanism was proposed. n‐Dodecyl mercaptan served dual roles—as a catalyst at low conversion and as a chain‐transfer agent at high conversion. Finally, the thermal properties were studied, and the glass‐transition temperature and thermal‐degradation temperature were, respectively, 25 and 80–100 °C higher than that of the azobisisobutyronitrile system. © 2002 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 40: 3692–3702, 2002     

Spectroscopic and theoretical investigation of molecular complexes of 2,4,6-trinitropyridine-1-oxide with some pyridine derivatives

Summary Stability constants and enthalpies of formation were determined forEDA complexes of 2,4,6-trinitropyridine-1-oxide (TNPO) with some pyridine bases. Energies of transition,hv _CT , calculated by the SCF MO CI-1 PPP method fit well the corresponding experimental data. Based on these results, geometries for the systems under study are proposed.

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Spektroskopische und theoretische Untersuchung von molekularen Komplexen des 2,4,6-Trinitropyridin-1-oxids mit einigen Pyridinderivaten

Zusammenfassung Es wurden Stabilitätskonstanten und Bildungsenthalpiewerte einigerEDA-Komplexe von 2,4,6-Trinitropyridin-1-oxid mit ausgewählten Pyridinbasen bestimmt. Dabei wurde eine gute Übereinstimnmung zwischen den Anregungsenergienhv _CT aus den UV-VIS-Spektren und den mit der SCF-MO-CI-1 PPP-Methode errechneten Werten gefunden. Es werden für die untersuchten Komplexe entsprechende Strukturen vorgeschlagen.

     

2,2-Difluor-1,2,3-trimethyl-1,3-diaza-2λ5-phospholidin

2,2-Difluoro-1,2,3-trimethyl-1,3-diaza-2λ⁵-phospholidine The title compound 1 is obtained in about 50% yield by oxidative fluorination of 1,2,3-trimethyl-1,3-diaza-2λ³-phospholidine, 6 , with IF₅. 1 is characterized by its nmr, mass, and ir spectra.     

Synthesis and structure of <Emphasis Type="Italic">N</Emphasis>-(2-(1-adamantyl)-2-hydroxyethyl)cytisine diastereomers

Diastereomers of N-(2-(1-adamantyl)-2-hydroxyethyl)cytisine were synthesized by reduction of N-(2-(1-adamantyl)-2-oxoethyl)cytisine with NaBH₄. Their structures were established using x-ray structure analysis. __________ Translated from Khimiya Prirodnykh Soedinenii, No. 3, pp. 244–247, May–June, 2007.     

Preparation and characterization of new thermally stable and optically active poly(ester‐imide)s by direct polycondensation with thionyl chloride in pyridine

4,4′‐hexafluoroisopropylidene‐2,2‐bis‐(phthalic acid anhydride) (1) was reacted with L ‐methionine (2) in acetic acid and the resulting N,N′–(4,4′‐hexafluoroisopropylidenediphthaloyl)‐bis‐L ‐methionine (4) was obtained in high yield. The direct polycondensation reaction of this diacid with several aromatic diols such as bisphenol A (5a), phenolphthalein (5b), 1,4‐dihydroxybenzene (5c), 4,4′‐dihydroxydiphenyl sulfide (5d), 4,6‐dihydroxypyrimidine (5e), 4,4′‐dihydroxydiphenyl sulfone (5f) and 2,4′‐dihydroxyacetophenone (5g) was carried out in a system of thionyl chloride and pyridine. Expecting that the reaction with thionyl chloride in pyridine might involve alternative intermediates different from an acyl chloride, the polycondensation at a higher temperature favorable for the reaction of the expected intermediate with nucleophiles was attempted, and a highly thermally stable poly(ester‐imide) was obtained by carrying out the reaction at 80°C. All of the above polymers were fully characterized by ¹H‐NMR, ¹⁹F‐NMR FT‐IR spectroscopy, elemental analysis and specific rotation. Some structural characterization and physical properties of these optically active poly(ester‐ imide)s are reported. Copyright © 2006 John Wiley & Sons, Ltd.     

Cyclohexanone Dimethyl Acetals: A 13C NMR, Thermodynamic, and Ab Initio Study

The spatial structures of a number of mono- and disubstituted 1,1-dimethoxycyclohexanes (cyclohexanone dimethyl acetals) were studied by ¹³C NMR spectroscopy. In the monosubstituted acetals, substituents (Me, Et, i-Pr, and MeO) on C-2 are axially oriented, contrary to their normal, equatorial orientation on C-3 and C-4. Besides the spectroscopic study, the relative thermodynamic stabilities of the cis-trans isomers of a few 2,X-dialkyl (X = 3, 4, 5, or 6) derivatives of the parent cyclohexanone dimethyl acetal were determined by acid-catalyzed chemical equilibration in MeOH solution. In the most stable isomeric form, the 2-substituent is axial and the other equatorial. In the less stable isomer, both substituents are equatorial, excluding the cis-2,6-dimethyl derivative, where the ¹³C NMR shift data point to a predominance of the diaxial form. In general, the enthalpy difference between the isomeric forms is ca. 9 kJ mol^–1, while the entropy term favors the less stable isomer by 4 to 16 J K^–1 mol^–1. In the 2,6-dimethyl derivatives, however, the trans form is favored by only 0.8 kJ mol^–1 in G _m at 298.15 K. The main findings of the experimental work are in good agreement with ab initio calculations.