阵列光镊的发展与应用

在生命科学研究中和在微量液体环境下分离液体中的细胞、生物大分子或胶体颗粒一直是一项具有挑战性的工作。"光镊"技术自20世纪80年代被提出到现在,在生命科学研究领域已经得到了日益广泛的运用。激光对细胞捕获的作用已得到进一步扩展,二维"光镊阵列"技术是近年来"光镊"技术中最重要的发展之一。讨论了阵列光镊的发展现状及基本原理,分析了它在生命科学中的应用,并对其发展趋势进行了展望。     

Discrete π Stack of a Tweezer-Shaped Naphthalenediimide–Anthracene Conjugate

The design and synthesis of a tweezer-shaped naphthalenediimide (NDI)–anthracene conjugate ( 2NDI ) are reported. In the structure of the closed form (π_NDI ⋅⋅⋅ π_NDI stack) of 2NDI , which was elucidated by single-crystal XRD, the existence of C−H ⋅⋅⋅ O hydrogen bonding involving the nearest carbonyl oxygen atom of an NDI unit was suggested. The tunability of π_NDI ⋅⋅⋅ π_NDI interactions was studied by means of UV/Vis absorption, fluorescence and NMR spectroscopy and molecular modelling. This revealed that the π_NDI ⋅⋅⋅ π_NDI interactions in 2NDI affect the absorption and emission properties depending on the temperature. Furthermore, in polar solvents, 2NDI prefers the stronger π_NDI ⋅⋅⋅ π_NDI stack, whereas the π_NDI ⋅⋅⋅ π_NDI interaction is diminished in nonpolar solvents. Importantly, the conformational variations of 2NDI can be reversibly switched by variation in temperature, and this suggests potential application for fluorogenic molecular switches upon temperature changes.     

Clip[5]arenes: A new family of molecular clips

Here we report the design and syntheses of two new triptycene-based rigid acyclic C-shaped hosts, clip[5]arenes C[5]OH and C[5]ME, and the strong host–guest complexation between C[5]OH and an electron-poor bipyridinium salt, paraquat G. The K_a value for the host–guest complex C[5]OH???G was calculated to be (1.09?±?0.36)??×??10⁵?M^?1 in acetone by using a non-linear curve-fitting method based on the UV–vis absorption titration experiments. Furthermore, based on this new host–guest recognition motif, a novel pseudopolyrotaxane-like supramolecular structure was constructed with C[5]OH threaded on polyviologen polymer VP-10.     

Substrate-dependent cell elasticity measured by optical tweezers indentation

In the last decade, cell elasticity has been widely investigated as a potential label free indicator for cellular alteration in different diseases, cancer included. Cell elasticity can be locally measured by pulling membrane tethers, stretching or indenting the cell using optical tweezers. In this paper, we propose a simple approach to perform cell indentation at pN forces by axially moving the cell against a trapped microbead. The elastic modulus is calculated using the Hertz-model. Besides the axial component, the setup also allows us to examine the lateral cell–bead interaction. This technique has been applied to measure the local elasticity of HBL-100 cells, an immortalized human cell line, originally derived from the milk of a woman with no evidence of breast cancer lesions. In addition, we have studied the influence of substrate stiffness on cell elasticity by performing experiments on cells cultured on two substrates, bare and collagen-coated, having different stiffness. The mean value of the cell elastic modulus measured during indentation was 26±9 Pa for the bare substrate, while for the collagen-coated substrate it diminished to 19±7 Pa. The same trend was obtained for the elastic modulus measured during the retraction of the cell: 23±10 Pa and 13±7 Pa, respectively. These results show the cells adapt their stiffness to that of the substrate and demonstrate the potential of this setup for low-force probing of modifications to cell mechanics induced by the surrounding environment (e.g. extracellular matrix or other cells).     

抗生物素蛋白与DNA相互作用的单分子研究

抗生物素蛋白(avidin)在生物单分子实验中被广泛用于DNA与修饰表面的连接,同时avidin也可作为一种DNA载体用于基因治疗中.本文利用原子力显微镜(AFM)、动态光散射(DLS)、单分子磁镊(MT)技术系统地研究了avidin与DNA之间的相互作用,以及avidin引起DNA凝聚的机理.首先通过AFM对avidin-DNA复合体形貌进行观察,发现不但有avidin导致DNA凝聚的环状形貌,同时也存在avidin自身聚集引起的DNA凝聚现象,通过定量分析,发现其凝聚尺寸越来越小,而当avidin浓度大于2 ng·μL~(-1)时,其凝聚尺寸又突然变大.DLS实验结果也显示了同样的规律,伴随着avidin浓度的升高,DNA的粒径大小从大约170 nm减小到125 nm左右,其电泳迁移率由-2.76(10~(-4)cm~2·V~(-1)·s~(-1))变化到-0.1(10~(-4)cm~2·V~(-1)·~(-1)).此外,通过MT技术的力谱曲线变化,发现avidin导致的DNA凝聚与其他多价离子相比,长度的变化曲线几乎呈线性变化,偶尔存在少而小的阶跃,这种变化趋势与组蛋白的变化曲线更相似.因此可以判断,avidin导致DNA凝聚是由avidin与DNA的静电吸引和avidin自身聚集两种相互作用引起的.     

Simultaneous Measurement of Individual ATPase and Mechanical Reactions by a Single Myosin Molecule at Work

Based on techniques for single molecule imaging and nanomanipulation by optical tweezers, we have developed a new technique that allows simultaneous measurement of individual ATPase and mechanical reactions from a single myosin molecule during force generation. We show how the ATPase reaction couples to the mechanical reaction directly at the single molecule level. The results show that the myosin head can produce force even after releasing the bound nucleotide, probably ADP, suggesting that the chemical energy driven by ATP hydrolysis can be hysteretically stored in the myosin molecule. This view does not support a widely accepted hypothesis in which the force generation is tightly coupled to ligand dissociation.This paper was originally presented as an invited paper at the seventh Meeting on Near Field Optics, which was held on July 1, 1998 at Nagoya University, Nagoya, organized by the Research Group on Near Field Optics of the Optical Society of Japan, an affiliate of the Japan Society of Applied Physics.     

酯键型鹅去氧胆酸分子钳对氨基酸甲酯的手性识别

利用紫外可见光谱差光谱滴定法考察了新型鹅去氧胆酸分子钳1～6对D／L氨基酸甲酯的对映选择性识别性能。结果表明,分子钳1～6对所考察的氨基酸甲酯均具有识别能力,其对D-氨基酸甲酯的识别优于对L-氨基酸甲酯的识别。受体与底物间的大小、形状匹配,微环境效应等对识别性能均有重要影响。识别作用的主要推动力来自受体与底物之间的互补氢键,受体与底物芳环之间的π-π堆叠作用等非共价键作用力的协同作用。     

Modeling the Supramolecular Properties of Aliphatic-Aromatic Hydrocarbons with Convex–Concave Topology

The molecular tweezers 1 a and 1 b have an electrostatic potential on the concave sides of the molecule which is surprisingly negative for hydrocarbons. According to semiempirical calculations this is a general phenomenon in nonconjugated π-electron systems with concave–convex topology, and it explains the receptor properties of 1 a and 1 b .     

Coherent Activation of DNA Tweezers: A “SET–RESET” Logic System

Open sesame : Aptamer–substrate complexes activate the coherent operation of two tweezers that act as a “SET–RESET” logic system. Each tweezer cycles between a fluorescent open state and a closed quenched state (Q=quencher, F=fluorophore) when triggered by adenosine monophosphate (AMP) and adenosine deaminase (AD).

     

用单分子技术研究Sso7d与DNA的相互作用

为了维持基因的稳定性,每种生物体都含有一套独特的染色质蛋白来保护脱氧核糖核酸(DNA)的结构,观察染色质蛋白对DNA结构的作用过程和结果,可以帮助人们了解这些蛋白的具体功能和作用机理.硫化叶菌是一种能在高温下存活的古细菌,Sso7d是硫化叶菌的一种染色质蛋白.深入地了解Sso7d和DNA链的相互作用,有助于解释硫化叶菌的DNA为何能在高温环境下保持活性,本文通过原子力显微镜(AFM)和磁镊两种单分子操作手段,研究了Sso7d与DNA的相互作用.AFM的实验结果给出了Sso7d与DNA的作用过程:结合Sso7d后,DNA首先发生弯折,然后出现loop结构,最终DNA会团聚为致密的核结构.利用磁镊装置测量了Sso7d的结合对打开DNA双链的影响,实验结果表明Sso7d的结合导致打开DNA双链的力的增大,经过数据分析,计算出Sso7d与DNA结合的结合能?G=3.1k_BT,平均每5.5个碱基对(bp)结合一个Sso7d,较高的结合密度和较大的结合能,两方面的作用结果,解释了Sso7d能够稳定DNA结构的原因.