Ab initio Computational Modeling of Glyphosate Analogs: Conformational Perspective

A historical perspective on the application of conformational analysis to structure-based ligand design approach is presented. The application of isodensity molecular electrostatic potential surfaces with the conformational energy surfaces (CES) have allowed us to reach pertinent conclusions for aiding synthetic and biochemical studies. Here we illustrate such an application on the modeling of the potent analogs of an important, environmentally stringent herbicidal compound glyphosate by constructing conformational energy surfaces. The systems were modeled by substituting F, Cl, and NH— OH moiety to the position of pharmacophoric nitrogen center in glyphosate structure. All the calculations were thoroughly performed with ab initio MO theory at Hartree–Fock method using 3-21G(d) basis functions. On the basis of the results, we identified the bioactive conformations for N-fluoro-glyphosate, N-chloro-glyphosate, and N-hydroxyamino-glyphosate as (−38^∘, 77^∘), (−61^∘, 111^∘), and (−167^∘, −169^∘), respectively. Geometry optimization of certain selected conformations of these compounds using hybrid DFT method with 6–31+G(d) basis functions provides nearly equal values of φ and ψ. Moreover, the results indicate that the global minimum structures of N-fluoro and N-chloro analogs of glyphosate show cyclic conformation whereas the N-hydroxyamino-glyphosate global minimum structure shows spyrocyclic and zig-zag conformation. Also, the predicted bioactive conformation of N-hydroxyamino analog optimally overlaps with glyphosate backbone in EPSPS complex with 0.1 Å RMSD value. However, the other two compounds slightly deviate from the backbone of glyphosate with RMSD of 0.92 Å for N-fluoro-glyphosate and 0.83 Å for N-chloro-glyphosate. The linear N-hydroxyamino-glyphosate exhibits relatively more number of intermolecular hydrogen bond interactions as compared to the other two analogs. Further, comparison of CES of previously studied glyphosate analogs such as N-hydroxy-glyphosate (2.2 μM) and N-amino-glyphosate (0.61 μM) with the present systems reveals the order of activity as: N-hydroxyamino-glyphosate > N-fluoro-glyphosate > N-chloro-glyphosate based on CES flexibility. Also, the calculated heats of formation of N-fluoro-glyphosate, N-chloro-glyphosate, and N-hydroxyamino-glyphosate are −288, −209, and −288 kcal/mol, respectively, which clearly indicate that the N-hydroxyamino and N-fluoro analogs of glyphosate are thermodynamically more stable than N-amino-glyphosate (−278 kcal/mol).     

Carob pod: A new substrate for citric acid production by Aspergillus niger

The production of citric acid from carob pod extract byA. niger in surface fermentation was investigated. A maximum citric acid concentration (85.5 g/L), citric acid productivity (4.07 g/L/d), specific citric acid production rate (0.18 g/g/d), and specific sugar uptake rate (0.358 g/g/d) was achieved at an initial sugar concentration of 200 g/L, pH of 6.5, and a temperature of 30°C. Other kinetic parameters, namely, citric acid yield, biomass yield, specific biomass production rate, and fermentation efficiency were maximum at pH 6.5, temperature 30°C, and initial sugar concentration 100 g/L. The external addition of methanol into the carob pod extract at a concentration up to 4% (v/v) improved the production of citric acid.     

Liquid–paper interactions during liquid drop impact and recoil on paper surfaces

The spreading and recoiling of water drops on several flat and macroscopically smooth model surfaces and on sized paper surfaces were studied over a range of drop impaction velocities using a high-speed CCD camera. The water drop spreading and recoiling results on several model hydrophobic and hydrophilic surfaces were found to be in agreement with observations reported in the literature. The maximum drop spreading diameter for those model surfaces at impact was found to be dependent upon the initial drop kinetic energy and the degree of hydrophobicity/hydrophilicity of the surface. The extent of the maximum drop recoiling was found to be much weaker for hydrophilic substrates than for hydrophobic substrates. Sized papers, however, showed an interesting switch of behaviour in the process of water drop impaction. They behave like a hydrophobic substrate when a water drop impacts on it, but like a hydrophilic substrate when water drop recoils. Although the contact angle between water and hydrophilic or hydrophobic non-porous surfaces changes from advancing to receding as reported in literature, the change of contact angle during water impact on paper surface is unique in that the level of sizing was found to have a smaller than expected influence on the degree of recoil. Atomic force microscopy (AFM) was used to probe fibres on a sized filter paper surface under water. The AFM data showed that water interacted strongly with the fibre even though the paper was heavily sized. Implications of this phenomenon were discussed in the context of inkjet print quality and of the surface conditions of sized papers. Results of this study are very useful in the understanding of inkjet ink droplet impaction on paper surfaces which sets the initial condition for ink penetration into paper after impaction.     

Adsorption of ionic surfactants on polar surfaces with a low content of chemically adsorbed alkyl chains

Colloidal silica and titanium dioxide were surface-modified by chemisorption of octadecyl dimethylmethoxy silane. The surface density of these alkyl silane groups was adjusted to less than 7% of the available surface hydroxyls, leaving the adsorbents hydrophilic and electrically charged in aqueous solution.Ionic surfactants (tetradecylpyridinium chloride and sodium lauryl sulfate) are adsorbed onto the surface-modified silica and titanium dioxide from aqueous solution, even in the case where the surface of the adsorbents exhibits the same sign of electrical charge as the surfactant ionic head groups. According to the adsorption model of Gu the chemiadsorbed alkyl chains are supposed to serve as anchors for small surface aggregates of the ionic surfactants.     

Surface area of papermaking woodpulps used by the British paper industry

The surface area was determined for various papermaking woodpulps: bleached eucalyptus globulus sulphate pulp; bleached eucalyptus grandis sulphate pulp; bleached betula verrucosa sulphate pulp; bleached pine/spruce sulphate pulp; bleached pine/spruce sulphate pulp fines. The method of negative adsorption was used which gives an effective wet surface area. By looking at negative adsorption data more closely, some inference can be made about the morphology of the substrate.Glossary of symbols B (e²/2kT)^1/2 - ¯C concentration of fibre per unit volume of pulp - 1 - ¯¯c - h angle between pore and the axis of the bed in a permeable material - K permeability coefficient - k Boltzmann constant - k ₀ shape factor for pores in a permeable material - n _i concentration of co-ion in the bulk solution - n _i experimentally observed increase in concentration of co-ion in the bulk solution - S surface area - S _t wS - S ₀ surface area per unit volume of permeable material - V _t total volume of solution - V excluded volume - V _s excluded volume accessible to water but not to ions - V _obs experimentally observed excluded volume - w weight of dry fibre - ¯ effective volume of fibres in a permeable pad - surface potential at outer Helmholtz plane     

高次非球面光路计算中的两个重要问题

提出在高次非球面的光路计算中运用变曲率的“辅助球面”概念,对某些文献在此方面存在的问题进行分析,提出迭代逼近精度的数值判据及浮动处理方法。     

Influence of surface structure on surface analytical statements

The influence of surface structure of technical materials on results and statements of surface analytical methods has been investigated. Especially surface roughness as a typical property of rolled products has been observed. For this purpose samples of steel (technical surface, roughness up to 5 m) and silicon wafers (polished surface) have been analyzed by SNMS and GDOS in order to get information about changes of the surface roughness as function of the sputtering time and their influence on the statements about the depth profiles obtained.     

Surfactant in the gaseous phase II. Influence on stability of foams and thin liquid films

The influence of the vapors ofn-amyl orn-decyl alcohol on the stability of single thin liquid films, single bubbles, and foam columns was determined. It was found that the presence of surfactant vapors lowered the stability of foams and single foam films. The mechanism of the destabilizing action of the surfactant vapors on wet, dynamic foams under dynamic conditions is discussed. It is shown that the destabilizing action of the surfactant vapors is a further indication that surface elasticity forces are the main factor determining stability of wet, dynamic foams.     

ToF‐SIMS observation of PTFE surfaces modified by α‐particle irradiation

The surface structure of polytetrafluoroethylene (PTFE) upon α‐particle irradiation has been investigated at doses in the range of 1 × 10⁷ to 1 × 10¹¹ Rad and compared with the surface structure of the unirradiated polymer. Both neat and 25% fiberglass content PTFE were studied. The samples, maintained at nominal room temperature, were irradiated in vacuum by 5.5 MeV ⁴He²⁺ ions generated in a tandem accelerator beam line. Static time‐of‐flight SIMS (ToF‐SIMS) was employed to probe chemical changes at the surface as a function of the irradiation level. In general, the data are indicative of increased cross‐linking at α‐doses less than 1 × 10⁹ Rad, followed by increased fragmentation and unsaturation at α‐doses greater than 1 × 10⁹ Rad. Throughout the irradiation regime, scission is a constant factor promoting cross‐linking, branching, and unsaturation. However, at α‐doses greater than 1 × 10¹⁰ Rad, extreme structural degradation of the polymer becomes evident and is accompanied by conversion to oxygen‐functionalized and aliphatic compounds. Thus, for PTFE in an α‐particle field, an upper exposure limit of ～10¹⁰ Rad is essential for nominal retention of molecular structure. Finally, a quantitative relationship between α‐dose and characteristic fragment ion intensity is developed. Copyright © 2005 John Wiley & Sons, Ltd.     

Far infrared surface plasmon propagation

New experimental evidence is presented which shows that, contrary to an earlier report, far-infrared surface plasmons at metal-air interfaces propagate long distances (tens of centimeters or longer).