Nanorings in planar confinement: the role of repulsive surfaces on the formation of lacuna smectics

ABSTRACT

We study the structure and liquid-crystalline phase behaviour of a model of confined non-convex circular soft-repulsive nanorings in a planar slit geometry using molecular-dynamics simulation. The separation distance between the structureless parallel soft-repulsive walls is made large enough to allow for the formation of a distinct bulk phase in the central region of the box which is in coexistence with the adsorbed fluid thus allowing the analysis of single-wall effects. As the density of the particles is increased, the fluid adsorbs (wets) onto the planar surfaces leading to the formation of well-defined smectic-A layers with a spacing proportional to the diameter of the rings. An analysis of the nematic order parameter at distances perpendicular to the surface reveals that the particles in each layer exhibit anti-nematic behaviour and planar (edge-on) anchoring relative to the short symmetry axis of the rings. This behaviour is in stark contrast to the behaviour observed in convex disc-like particles that have the tendency to form nematic (discotic) structures with homeotropic (face-on) anchoring. The smectic phases formed by nanorings in the bulk and under confinement are characterised by the formation of low-density layered liquid-crystalline states with large voids, referred to here as lacuna smectic phases. In contrast to what is typically found for confined liquid-crystalline systems involving convex particles, no apparent biaxiality is found for nanorings in planar confinement. We argue that formation of the low-density lacuna smectic layers with planar anchoring is a consequence of the non-convex shape of the circular rings that allow for interpenetration between the particles as observed for nanorings under bulk conditions [C. Avendaño, G. Jackson, E.A. Müller and F.A. Escobedo, Proc. Natl. Acad. Sci. U.S.A. 113, 9699 (2016); H.H. Wensink and C. Avendaño, Phys. Rev. E 94, 062704 (2016)].     

Beam dynamics studies of the photo-injector in low-charge operation mode for the ERL test facility at IHEP

The energy recovery linac test facility （ERL-TF）, which is a compact ERL-FEL （free electron laser） two-purpose machine, was proposed at the Institute of High Energy Physics, Beijing. As one important component of the ERL-TF, the photo-injector that started with a photocathode direct-current gun has been designed. In this paper, optimization of the injector beam dynamics in low-charge operation mode is performed with iterative scans using Impact-T. In addition, the dependencies between the optimized beam quality and the initial offset at cathode and element parameters are, investigated. The tolerance of alignment and rotation errors is also analyzed.     

Amorphous Fe–Mg alloy thin films: magnetic properties and atomic vibrational dynamics

Amorphous (a-) Fe _x Mg_1?x alloys are interesting materials for the investigation of non-Debye-like low-energy vibrational excitations. We have prepared a-Fe _x Mg_1?x alloy thin films (0.3 ≤ × ≤0.7) by vapour quenching. The amorphous state was confirmed by conversion electron Mössbauer spectroscopy between 4.2–300 K, and the x- and temperature-dependence of the isomer shift and hyperfine magnetic field was measured. For x= 0.6 and 0.7, magnetic ordering occurs below ~150 K. The atomic vibrational density of states, g(E), was determined by nuclear resonant inelastic scattering, providing clear evidence for the non-Debye-like low-energy vibrational excitations.     

Adsorption dynamics of O2 on Cu(1 0 0)

We have studied the adsorption of O₂ on the Cu(1 0 0) surface using both static potential energy surface (PES) calculations and ab initio molecular dynamics. The dynamical calculations complement the PES results, revealing steering effects which could not be predicted based on the static calculations only. We study the effect of oxidation and Ag doping on O₂ adsorption dynamics. The results are discussed in the light of recent molecular beam experiments.     

Synchrotron X‐ray footprinting on tour

Synchrotron footprinting is a valuable technique in structural biology for understanding macromolecular solution‐state structure and dynamics of proteins and nucleic acids. Although an extremely powerful tool, there is currently only a single facility in the USA, the X28C beamline at the National Synchrotron Light Source (NSLS), dedicated to providing infrastructure, technology development and support for these studies. The high flux density of the focused white beam and variety of specialized exposure environments available at X28C enables footprinting of highly complex biological systems; however, it is likely that a significant fraction of interesting experiments could be performed at unspecialized facilities. In an effort to investigate the viability of a beamline‐flexible footprinting program, a standard sample was taken on tour around the nation to be exposed at several US synchrotrons. This work describes how a relatively simple and transportable apparatus can allow beamlines at the NSLS, CHESS, APS and ALS to be used for synchrotron footprinting in a general user mode that can provide useful results.     

Analyzing ultrafast multiplex coherent anti‐Stokes Raman spectra with picosecond probing

This article reports an efficient method to simulate time and frequency resolved coherent anti‐Stokes Raman scattering spectra measured with picosecond pump and probe fields and ultrashort Stokes pulses. A systematic comparison of measured and simulated time and frequency dependent data is presented for carbon tetrachloride, chloroform, cyclohexane, octane, and poly(methyl methacrylate). While the first compound exhibits no Raman active modes in the considered spectral region of the CH‐stretch vibrations, the other ones show Raman spectra of increasing complexity. Vibrational frequencies and homogeneous dephasing rates are extracted by fitting explicit analytical formulas to the recorded data. Interference between nonresonant and resonant contributions to the nonlinear polarization is taken fully into account. The ability to measure the influence of inhomogeneous broadening is discussed. Copyright © 2014 John Wiley & Sons, Ltd.     

Distance distributions and dynamics of a zinc finger peptide from fluorescence resonance energy transfer measurements

Time-resolved fluorescence resonance energy transfer (FRET) measurements were used to measure distance distributions and intramolecular dynamics (site-to-site diffusion) of a 28-residue single-domain zinc finger peptide in the absence and presence of zinc ion. Energy transfer was measured between TRP₁₄ and a N-terminal DNS group. As expected, the TRP-to-DNS distance distribution for zinc-bound peptide is shorter and narrower (R _av=11.2 Å,hw=2.8 Å) than the metal-free peptide (R _av=20.1 Å,hw=14.5 Å). The degree of mutual donor-to-acceptor diffusion (D) was also determined for these distributions. For zinc-bound peptide there is no detectible diffusion (D0.2 Ų/ns), whereas for metal-free peptide a considerable amount of motion is occurring between the donor and the acceptor (D=12 Ų/ns). These results indicate that the zinc-bound peptide folds into a unique, well-defined conformation, whereas the metal-free conformation is flexible and rapidly changing. The absence of detectible mutual site-to-site diffusion between the donor and the acceptor in the metal-bound zinc finger peptide indicates that intramolecular motion is essentially frozen out, on the FRET time scale, as a consequence of zinc coordination.Dedicated to the memory of Barbara D. Wells.     

Investigation of the dissociative adsorption for cyclopropane on the copper surface by density functional theory and quantum chemical molecular dynamics method

The dissociative adsorption of cyclopropane on the copper surface was studied using quantum chemical molecular dynamics method with “Colors-Excite” code and density functional theory by Amsterdam Density Functional program (ADF2000). The excited state of cyclopropane was used as adsorbate to simulate the dissociated adsorption under an irradiation energy of ca. 10 eV. One of the C-C bonds in cyclopropane was broken and the two new bonds between cyclopropane and copper surface were formed. The electrons transferred from the copper atoms to cyclopropane with a value of about 0.2e. The shorter distances between the carbons and surface copper atoms showed the existence of strong interaction. Consistently, the results indicated metallacyclopentane was the most possible intermediate species in dissociative adsorption by ADF2000 and “Colors-Excite” method.