化学及生物体系中的分别识别*

分子识别的目标是研究分子间专一性地相互作用, 这在化学及生命过程中起着非常重要的作用。本文综述了分子识别的机制及其在化学、生命科学、材料、信息等有关学科中的应用。     

荧光偏振免疫分析方法分析磺胺二甲基嘧啶

建立了检测磺胺二甲基嘧啶的荧光偏振免疫分析方法。合成了3种结构不同的荧光标记物,并用薄层色谱法提纯。研究了不同结构的荧光标记物对FPIA方法灵敏度的影响。该FPIA方法在缓冲液中的检出限为1.6μg/L,半数抑制量(IC50)为41μg/L,检测范围为5~458μg/L,可以达到食品中SMZ最低残留限量的要求。研究了FPIA的动力学过程及对其它16种磺胺类药物的交叉反应,结果显示,SMZ、磺胺甲基嘧啶和磺胺二甲基恶唑的交叉反应率分别为100%、8.7%和2.4%,其它磺胺类药物的交叉反应率均低于1%。     

利用荧光标记引物和DNA自动测序仪确定DNA的断裂位点

建立了利用荧光标记引物和DNA自动测序仪进行DNA断裂位点分析的新方法, 该方法简便易行、灵敏度高、重复性好、数据分析客观性强、结果可靠, 适用于各种因素造成的DNA断裂位点的分析.     

Tuning Immobilized Commercial Lipase Preparations Features by Simple Treatment with Metallic Phosphate Salts

Four commercial immobilized lipases biocatalysts have been submitted to modifications with different metal (zinc, cobalt or copper) phosphates to check the effects of this modification on enzyme features. The lipase preparations were Lipozyme^®TL (TLL-IM) (lipase from Thermomyces lanuginose), Lipozyme^®435 (L435) (lipase B from Candida antarctica), Lipozyme^®RM (RML-IM), and LipuraSelect (LS-IM) (both from lipase from Rhizomucor miehei). The modifications greatly altered enzyme specificity, increasing the activity versus some substrates (e.g., TLL-IM modified with zinc phosphate in hydrolysis of triacetin) while decreasing the activity versus other substrates (the same preparation in activity versus R- or S- methyl mandelate). Enantiospecificity was also drastically altered after these modifications, e.g., LS-IM increased the activity versus the R isomer while decreasing the activity versus the S isomer when treated with copper phosphate. Regarding the enzyme stability, it was significantly improved using octyl-agarose-lipases. Using all these commercial biocatalysts, no significant positive effects were found; in fact, a decrease in enzyme stability was usually detected. The results point towards the possibility of a battery of biocatalysts, including many different metal phosphates and immobilization protocols, being a good opportunity to tune enzyme features, increasing the possibilities of having biocatalysts that may be suitable for a specific process.     

Detailed Investigation of the Immunodominant Role of O‐Antigen Stoichiometric O‐Acetylation as Revealed by Chemical Synthesis,Immunochemistry, Solution Conformation and STD‐NMR Spectroscopy for Shigella flexneri 3a

Shigella flexneri 3a causes bacillary dysentery. Its O‐antigen has the {2)‐[α‐d ‐Glcp‐(1→3)]‐α‐l ‐Rhap‐(1→2)‐α‐l ‐Rhap‐(1→3)‐[Ac→2]‐α‐l ‐Rhap‐(1→3)‐[Ac→6]_{≈40 %}‐β‐d ‐GlcpNAc‐(1→} ([(E)AB_AcC_AcD]) repeating unit, and the non‐O‐acetylated equivalent defines S. flexneri X. Propyl hepta‐, octa‐, and decasaccharides sharing the (E′)A′B_AcCD(E)A sequence, and their non‐O‐acetylated analogues were synthesized from a fully protected B_AcCD(E)A allyl glycoside. The stepwise introduction of orthogonally protected mono‐ and disaccharide imidate donors was followed by a two‐step deprotection process. Monoclonal antibody binding to twenty‐six S. flexneri types 3a and X di‐ to decasaccharides was studied by an inhibition enzyme‐linked immunosorbent assay (ELISA) and STD‐NMR spectroscopy. Epitope mapping revealed that the 2_C‐acetate dominated the recognition by monoclonal IgG and IgM antibodies and that the B_AcCD segment was essential for binding. The glucosyl side chain contributed to a lesser extent, albeit increasingly with the chain length. Moreover, tr‐NOESY analysis also showed interaction but did not reveal any meaningful conformational change upon antibody binding.     

Exploring vision-related acupuncture point specificity with multivoxel pattern analysis

Acupoint specificity is one of the central issues of functional magnetic resonance imaging (fMRI) studies of acupuncture and has been under discussed. However, strong and consistent proof has not been provided for the existence of acupoint specificity, and unsuitable analysis approach applied could be the reason. We observed that previous researches of acupoint specificity were mostly based on model-based methods which were limited to make exploration of acupoint specificity because of the inaccurate specified prior. Here we applied multi-voxel pattern analysis (MVPA) to investigate the specificity of brain activation patterns induced by acupuncture stimulations at a vision-related acupoint (GB37) and a nearby nonacupoint (NAP). Results showed that multiple brain areas could differentiate the central neural response patterns induced by acupuncture stimulation at these two sites with higher accuracy above the chance level. These regions included occipital cortex, limbic-cerebellar areas and somatosensory cortex. Our results support that the characteristic neural response patterns of brain cortex to the acupuncture stimulation at GB37 and a nearby NAP could differ from each other effectively with the application of MVPA approach.     

Heterogeneous surface saponification of suspension‐polymerized monodisperse poly(vinyl acetate) microspheres using various ions

Poly(vinyl alcohol) (PVA)/poly(vinyl acetate) (PVAc) microspheres with a skin/core structure were prepared through the heterogeneous surface saponification of PVAc microspheres suspension‐polymerized. The PVA skin formed through the heterogeneous saponification was hydrogel swellable in water. In addition, to obtain monodisperse PVA/PVAc microspheres having various skin/core ratios and morphologies, the ion‐specificities to the heterogeneous saponification were investigated using SO, Cl^?, NO, Br^?, and I^? for anions and Li⁺, Na⁺, and K⁺ for cations, respectively. The ions were not specific significantly to the rate of the heterogeneous saponification, while were related to the degree of saponification (DS). DSs had different values between by weight loss (DS_w) and by proton nuclear magnetic resonance spectroscopy (DS_NMR) measurements. The order of DS_ws was SO < Cl^? < NO < Br^? < I^? for anions and K⁺ < Na⁺ < Li⁺ for cations, and that of DS_NMRs, I^? < Br^? < NO < Cl^? < SO for anions and Li⁺ < Na⁺ < K⁺ for cations. The differences in values between DS_ws and DS_NMRs were caused by the dissolution of PVA skin and were significantly decreased for SO. The peaks at melting temperature of PVA were sharp and their areas were large for ions deswelling PVA skins.     

Cyclodextrin-derived mimic of glutathione peroxidase exhibiting enzymatic specificity and high catalytic efficiency

To elucidate the relationships between molecular recognition and catalytic ability, we chose three assay systems using three different thiol substrates, glutathione (GSH), 3-carboxyl-4-nitrobenzenethiol (CNBSH), and 4-nitrobenzenethiol (NBSH), to investigate the glutathione peroxidase (GPx) activities of 2,2'-ditellurobis(2-deoxy-beta-cyclodextrin) (2-TeCD) in the presence of a variety of structurally distinct hydroperoxides (ROOH), H2O2, tert-butyl peroxide (tBuOOH), and cumene peroxide (CuOOH), as the oxidative reagent. A comparative study of the three assay systems revealed that the cyclodextrin moiety of the GPx mimic 2-TeCD endows the molecule with selectivity for ROOH and thiol substrates, and hydrophobic interactions are the most important driving forces in 2-TeCD complexation. Furthermore, in the novel NBSH assay system, 2-TeCD can catalyze the reduction of ROOH about 3.4 x 10(5) times more efficiently than diphenyl diselenide (PhSeSePh), and its second-order rate constants for thiol are similar to some of those of native GPx. This comparative study confirms that efficient binding of the substrate is essential for the catalytic ability of the GPx mimic, and that NBSH is the preferred thiol substrate of 2-TeCD among the chosen thiol substrates. Importantly, the proposed mode of action of 2-TeCD imitates the role played by several possible noncovalent interactions between enzymes and substrates in influencing catalysis and binding.     

Functional contribution of coenzyme specificity-determining sites of 7α-hydroxysteroid dehydrogenase from Clostridium absonum

Studies of the molecular determinants of coenzyme specificity help to reveal the structure-function relationship of enzymes, especially with regards to coenzyme specificity-determining sites (CSDSs) that usually mediate complex interactions. NADP(H)-dependent 7α-hydroxysteroid dehydrogenase from Clostridium absonum (CA 7α-HSDH), a member of the short-chain dehydrogenase/reductase superfamily (SDRs), possesses positively charged CSDSs that mainly contain T15, R16, R38, and R194, forming complicated polar interactions with the adenosine ribose C2 phosphate group of NADP(H). The R38 residue is crucial for coenzyme anchoring, but the influence of the other residues on coenzyme utilization is still not clear. Hence, we performed alanine scanning mutagenesis and molecular dynamic (MD) simulations. The results suggest that the natural CSDSs have the greatest NADP(H)-binding affinity, but not the best activity (k_cat) toward NADP⁺. Compared with the wild type and other mutants, the mutant R194A showed the highest catalytic efficiency (k_cat/K_m), which was more than three-times that of the wild type. MD simulation and kinetics analysis suggested that the importance of the CSDSs of CA 7α-HSDH should be in accordance with the following order R38 > T15 > R16 > R194, and S39 may have a supporting role in NADP(H) anchoring for mutants R16A/T194A and T15A/R16A/T194A.     

EFFECT OF THE DEGREE OF DVB CROSSLINKING ON THE METAL ION SPECIFICITY OF POLYACRYLAMIDE-SUPPORTED GLYCINES

Metal ion specificity studies of divinylbenzene (DVB)-crosslinked polyacrylamide-supported glycines in different structural environments were investigated. The effect of the degree of crosslinking on the specific rebinding of the desorbed metal ion was investigated towards Co(II), Ni(II), Cu(II), and Zn(II) ions. The metal ion-desorbed resins showed specificity for the desorbed metal ion and the specificity characteristics increases with an increasing degree of the crosslinking agent. The polymeric ligands and metal complexes were characterized by IR, UV-visible and EPR spectra, and by SEM analysis. The swelling and solvation characteristics of the crosslinked polymers, polymeric ligands and metal complexes, the effect of the pH dependence on metal ion binding and rebinding and the kinetics of metal ion binding and rebinding were also followed. The complexation resulted in the downfield shift of the carboxylate peak in the IR spectra. The EPR parameters are in agreement with a distorted tetragonal geometry. The Cu(II) ion-desorbed resins selectively rebinds Cu(II) ions from a mixture of Cu(II) and Co(II) and Cu(II) and Ni(II) ions. The resin could be regenerated several times without loss of capacity and effective for the specific and selective rebinding of Cu(II) ions.