利用荧光标记引物和DNA自动测序仪确定DNA的断裂位点

建立了利用荧光标记引物和DNA自动测序仪进行DNA断裂位点分析的新方法, 该方法简便易行、灵敏度高、重复性好、数据分析客观性强、结果可靠, 适用于各种因素造成的DNA断裂位点的分析.     

Detailed Investigation of the Immunodominant Role of O‐Antigen Stoichiometric O‐Acetylation as Revealed by Chemical Synthesis,Immunochemistry, Solution Conformation and STD‐NMR Spectroscopy for Shigella flexneri 3a

Shigella flexneri 3a causes bacillary dysentery. Its O‐antigen has the {2)‐[α‐d ‐Glcp‐(1→3)]‐α‐l ‐Rhap‐(1→2)‐α‐l ‐Rhap‐(1→3)‐[Ac→2]‐α‐l ‐Rhap‐(1→3)‐[Ac→6]_{≈40 %}‐β‐d ‐GlcpNAc‐(1→} ([(E)AB_AcC_AcD]) repeating unit, and the non‐O‐acetylated equivalent defines S. flexneri X. Propyl hepta‐, octa‐, and decasaccharides sharing the (E′)A′B_AcCD(E)A sequence, and their non‐O‐acetylated analogues were synthesized from a fully protected B_AcCD(E)A allyl glycoside. The stepwise introduction of orthogonally protected mono‐ and disaccharide imidate donors was followed by a two‐step deprotection process. Monoclonal antibody binding to twenty‐six S. flexneri types 3a and X di‐ to decasaccharides was studied by an inhibition enzyme‐linked immunosorbent assay (ELISA) and STD‐NMR spectroscopy. Epitope mapping revealed that the 2_C‐acetate dominated the recognition by monoclonal IgG and IgM antibodies and that the B_AcCD segment was essential for binding. The glucosyl side chain contributed to a lesser extent, albeit increasingly with the chain length. Moreover, tr‐NOESY analysis also showed interaction but did not reveal any meaningful conformational change upon antibody binding.     

Exploring vision-related acupuncture point specificity with multivoxel pattern analysis

Acupoint specificity is one of the central issues of functional magnetic resonance imaging (fMRI) studies of acupuncture and has been under discussed. However, strong and consistent proof has not been provided for the existence of acupoint specificity, and unsuitable analysis approach applied could be the reason. We observed that previous researches of acupoint specificity were mostly based on model-based methods which were limited to make exploration of acupoint specificity because of the inaccurate specified prior. Here we applied multi-voxel pattern analysis (MVPA) to investigate the specificity of brain activation patterns induced by acupuncture stimulations at a vision-related acupoint (GB37) and a nearby nonacupoint (NAP). Results showed that multiple brain areas could differentiate the central neural response patterns induced by acupuncture stimulation at these two sites with higher accuracy above the chance level. These regions included occipital cortex, limbic-cerebellar areas and somatosensory cortex. Our results support that the characteristic neural response patterns of brain cortex to the acupuncture stimulation at GB37 and a nearby NAP could differ from each other effectively with the application of MVPA approach.     

Heterogeneous surface saponification of suspension‐polymerized monodisperse poly(vinyl acetate) microspheres using various ions

Poly(vinyl alcohol) (PVA)/poly(vinyl acetate) (PVAc) microspheres with a skin/core structure were prepared through the heterogeneous surface saponification of PVAc microspheres suspension‐polymerized. The PVA skin formed through the heterogeneous saponification was hydrogel swellable in water. In addition, to obtain monodisperse PVA/PVAc microspheres having various skin/core ratios and morphologies, the ion‐specificities to the heterogeneous saponification were investigated using SO, Cl^?, NO, Br^?, and I^? for anions and Li⁺, Na⁺, and K⁺ for cations, respectively. The ions were not specific significantly to the rate of the heterogeneous saponification, while were related to the degree of saponification (DS). DSs had different values between by weight loss (DS_w) and by proton nuclear magnetic resonance spectroscopy (DS_NMR) measurements. The order of DS_ws was SO < Cl^? < NO < Br^? < I^? for anions and K⁺ < Na⁺ < Li⁺ for cations, and that of DS_NMRs, I^? < Br^? < NO < Cl^? < SO for anions and Li⁺ < Na⁺ < K⁺ for cations. The differences in values between DS_ws and DS_NMRs were caused by the dissolution of PVA skin and were significantly decreased for SO. The peaks at melting temperature of PVA were sharp and their areas were large for ions deswelling PVA skins.     

Cyclodextrin-derived mimic of glutathione peroxidase exhibiting enzymatic specificity and high catalytic efficiency

To elucidate the relationships between molecular recognition and catalytic ability, we chose three assay systems using three different thiol substrates, glutathione (GSH), 3-carboxyl-4-nitrobenzenethiol (CNBSH), and 4-nitrobenzenethiol (NBSH), to investigate the glutathione peroxidase (GPx) activities of 2,2'-ditellurobis(2-deoxy-beta-cyclodextrin) (2-TeCD) in the presence of a variety of structurally distinct hydroperoxides (ROOH), H2O2, tert-butyl peroxide (tBuOOH), and cumene peroxide (CuOOH), as the oxidative reagent. A comparative study of the three assay systems revealed that the cyclodextrin moiety of the GPx mimic 2-TeCD endows the molecule with selectivity for ROOH and thiol substrates, and hydrophobic interactions are the most important driving forces in 2-TeCD complexation. Furthermore, in the novel NBSH assay system, 2-TeCD can catalyze the reduction of ROOH about 3.4 x 10(5) times more efficiently than diphenyl diselenide (PhSeSePh), and its second-order rate constants for thiol are similar to some of those of native GPx. This comparative study confirms that efficient binding of the substrate is essential for the catalytic ability of the GPx mimic, and that NBSH is the preferred thiol substrate of 2-TeCD among the chosen thiol substrates. Importantly, the proposed mode of action of 2-TeCD imitates the role played by several possible noncovalent interactions between enzymes and substrates in influencing catalysis and binding.     

Functional contribution of coenzyme specificity-determining sites of 7α-hydroxysteroid dehydrogenase from Clostridium absonum

Studies of the molecular determinants of coenzyme specificity help to reveal the structure-function relationship of enzymes, especially with regards to coenzyme specificity-determining sites (CSDSs) that usually mediate complex interactions. NADP(H)-dependent 7α-hydroxysteroid dehydrogenase from Clostridium absonum (CA 7α-HSDH), a member of the short-chain dehydrogenase/reductase superfamily (SDRs), possesses positively charged CSDSs that mainly contain T15, R16, R38, and R194, forming complicated polar interactions with the adenosine ribose C2 phosphate group of NADP(H). The R38 residue is crucial for coenzyme anchoring, but the influence of the other residues on coenzyme utilization is still not clear. Hence, we performed alanine scanning mutagenesis and molecular dynamic (MD) simulations. The results suggest that the natural CSDSs have the greatest NADP(H)-binding affinity, but not the best activity (k_cat) toward NADP⁺. Compared with the wild type and other mutants, the mutant R194A showed the highest catalytic efficiency (k_cat/K_m), which was more than three-times that of the wild type. MD simulation and kinetics analysis suggested that the importance of the CSDSs of CA 7α-HSDH should be in accordance with the following order R38 > T15 > R16 > R194, and S39 may have a supporting role in NADP(H) anchoring for mutants R16A/T194A and T15A/R16A/T194A.     

EFFECT OF THE DEGREE OF DVB CROSSLINKING ON THE METAL ION SPECIFICITY OF POLYACRYLAMIDE-SUPPORTED GLYCINES

Metal ion specificity studies of divinylbenzene (DVB)-crosslinked polyacrylamide-supported glycines in different structural environments were investigated. The effect of the degree of crosslinking on the specific rebinding of the desorbed metal ion was investigated towards Co(II), Ni(II), Cu(II), and Zn(II) ions. The metal ion-desorbed resins showed specificity for the desorbed metal ion and the specificity characteristics increases with an increasing degree of the crosslinking agent. The polymeric ligands and metal complexes were characterized by IR, UV-visible and EPR spectra, and by SEM analysis. The swelling and solvation characteristics of the crosslinked polymers, polymeric ligands and metal complexes, the effect of the pH dependence on metal ion binding and rebinding and the kinetics of metal ion binding and rebinding were also followed. The complexation resulted in the downfield shift of the carboxylate peak in the IR spectra. The EPR parameters are in agreement with a distorted tetragonal geometry. The Cu(II) ion-desorbed resins selectively rebinds Cu(II) ions from a mixture of Cu(II) and Co(II) and Cu(II) and Ni(II) ions. The resin could be regenerated several times without loss of capacity and effective for the specific and selective rebinding of Cu(II) ions.     

Mixed catechol-hydroxamate and catechol-(o-hydroxy)phenacyl siderophores: synthesis and uptake studies with receptor-deficient Escherichia coli mutants

Biscatechol-hydroxamate and catechol-bishydroxamate chelators of similar architecture were synthesized by a small set of acylation reactions, Michael additions, and domino Wittig alkenations and they were tested for siderophoric activity in various receptor-deficient mutants of Escherichia coli under iron starvation. Growth promotion occurred only in mutants featuring catecholate recognizing receptors. Simplified mimics of the natural siderophores parabactin and agrobactin, carrying an o-hydroxybenzamide instead of the 2-(o-hydroxyphenyl)oxazoline ligand, were prepared analogously. Unlike the originals these mimics are fully functional siderophores in E. coli.     

The reactivity of phosphonic esters in aqueous micellar solutions of cationic surfactants

The micellar effect of cationic surfactants in alkaline hydrolysis of O-alkyl-O-aryl-chloromethyl phosphonates involves a positive contribution of concentrating the reagents and a negative effect of the micellar environment due to a loss in the activation entropy. The reactivity of substrates in micelles depends on both electronic and hydrophobic characteristics of substituents in the aryl group.     

SPECTRAL SPECIFICITY OF AJUGASTERONE C

筋骨草甾酮Ｃ是分布于植物中的植物甾酮类化合物，具有抗氧化的作用．本文标定了该化合物中所有的碳信号，并通过１３Ｃ－１ＨＣＯＳＹ和１Ｈ－１ＨＣＯＳＹ技术纠正了文献中氢信号归属的错误．