Antimicrobial Compounds Isolated from Endolichenic Fungi: A Review

A lichen is a symbiotic relationship between a fungus and a photosynthetic organism, which is algae or cyanobacteria. Endolichenic fungi are a group of microfungi that resides asymptomatically within the thalli of lichens. Endolichenic fungi can be recognized as luxuriant metabolic artists that produce propitious bioactive secondary metabolites. More than any other time, there is a worldwide search for new antibiotics due to the alarming increase in microbial resistance against the currently available therapeutics. Even though a few antimicrobial compounds have been isolated from endolichenic fungi, most of them have moderate activities, implying the need for further structural optimizations. Recognizing this timely need and the significance of endolichenic fungi as a promising source of antimicrobial compounds, the activity, sources and the structures of 31 antibacterial compounds, 58 antifungal compounds, two antiviral compounds and one antiplasmodial (antimalarial) compound are summarized in this review. In addition, an overview of the common scaffolds and structural features leading to the corresponding antimicrobial properties is provided as an aid for future studies. The current challenges and major drawbacks of research related to endolichenic fungi and the remedies for them have been suggested.     

Histone deacetylase inhibitor induced the production of three novel prenylated tryptophan analogs in the entomopathogenic fungus, Torrubiella luteorostrata

Suberoyl bis-hydroxamic acid (SBHA), a histone deacetylase (HDAC) inhibitor, led to significant changes in the secondary metabolism of an entomopathogenic fungus, Torrubiella luteorostrata, and induced the production of three new prenylated tryptophan analogs, luteorides A-C (1-3). The structures are characterized by the presence of an (E)-oxime group, which is an unusual functional group in natural products, and a 3-methylbuta-1,3-dienyl unit as a common substituent. The method of culturing entomopathogenic fungi in the presence of HDAC inhibitors, such as SBHA, is convenient and attractive for obtaining novel secondary metabolites.     

Human and climate impact on 15N natural abundance of plants and soils in high-mountain ecosystems: a short review and two examples from the Eastern Pamirs and Mt. Kilimanjaro

Population pressure increasingly endangers high-mountain ecosystems such as the pastures in the Eastern Pamirs and the mountain forests on Mt. Kilimanjaro. At the same time, these ecosystems constitute the economic basis for millions of people living there. In our study, we, therefore, aimed at characterising the land-use effects on soil degradation and N-cycling by determining the natural abundance of ¹⁵N. A short review displays that δ¹⁵N of plant–soil systems may often serve as an integrated indicator of N-cycles with more positive δ¹⁵N values pointing towards N-losses. Results for the high-mountain pastures in the Eastern Pamirs show that intensively grazed pastures are significantly enriched in ¹⁵N compared to the less-exploited pastures by 3.5 ‰, on average. This can be attributed to soil organic matter degradation, volatile nitrogen losses, nitrogen leaching and a general opening of the N-cycle. Similarly, the intensively degraded savanna soils, the cultivated soils and the soils under disturbed forests on the foothill of Mt. Kilimanjaro reveal very positive δ¹⁵N values around 6.5 ‰. In contrast, the undisturbed forest soils in the montane zone are more depleted in ¹⁵N, indicating that here the N-cycle is relatively closed. However, significantly higher δ¹⁵N values characterise the upper montane forest zone at the transition to the subalpine zone. We suggest that this reflects N-losses by the recently monitored and climate change and antropogenically induced increasing fire frequency pushing the upper montane rainforest boundary rapidly downhill. Overall, we conclude that the analysis of the ¹⁵N natural abundance in high-mountain ecosystems is a purposeful tool for detecting land-use- or climate change-induced soil degradation and N-cycle opening.     

Evaluation of some pollutant levels in environmental samples collected from the area of the new campus of Taif University

The levels of radioactivity and heavy metals in soil, plant and groundwater samples collected from the area of the new campus of Taif University, Saudi Arabia, and its neighbouring areas have been determined. High-resolution gamma-ray spectroscopy was used for radioactivity measurements, and inductively coupled plasma atomic emission spectroscopy was used to determine the concentration of heavy metals. The means of ²²⁶Ra, ²²⁸Ra and ⁴⁰K concentrations in water samples collected from four wells were found to be 0.13±0.03, 0.05±0.03 and 1.3±0.5 Bq l^?1, respectively. The means of ²³⁸U, ²²⁶Ra, ²²⁸Ra (²³²Th for soil samples) and ⁴⁰K concentrations in wild plant and soil samples were found to be 3.7±4.1, 8.8±11.6, 3.8±2.9 and 1025±685, and 8.6±3.4, 12.8±3.4, 16.6±7.1 and 618±82 Bq kg^?1 dry weight (DW), respectively. The ¹³⁷Cs of artificial origin was also detected in soil samples with a mean concentration of 3.8±2.2 Bq kg^?1 DW. Evaluating the results, it can be concluded that the concentrations of ²³⁸U, ²²⁶Ra, ²³²Th and ⁴⁰K in soil samples fall within the world average. Furthermore, 19 trace and major elements in groundwater samples and 22 elements in soil and plant samples were determined. The sampling locations of soil can be classified into three groups (relatively high, medium and low polluted) according to their calculated metal pollution index using the contents of trace and major elements. A cluster analysis of the contents of radioactivity and trace element contents in soil samples shows the presence of two main distinct clusters of sampling locations.     

The dose dependence of 45 keV V+ and Bi+Ion sputtering yield of copper

The sputtering yield of 45 keV V⁺ ions on copper is found to decrease with increasing dose even for very large doses, whilst the yield of 45 keV Bi⁺ ions on copper increases with increasing dose until approximately ten times the projected range of the Bi⁺ ions has been sputtered away. The fate of the incoming V⁺ and Bi⁺ ions was investigated. A radiotracer technique showed that vanadium accumulated on the target surface, whilst bismuth diffused into the target, as was seen by means of Rutherford-scattering of light ions.     

Portable X-Ray Fluorescence as a Rapid Technique for Surveying Elemental Distributions in Soil

Case studies from two sites demonstrate how concentration distributions of hazardous contaminants can be rapidly measured and visualized using portable XRF (X-ray fluorescence) coupled with geostatistical interpolation tools. In this study, lead is used as an exemplar due to its well-known detrimental effect on human health through long-term exposure. A portable Thermo Scientific NITON X-ray fluorescence (XRF) instrument was used for real-time in-situ concentration measurements, which were linked to GPS coordinates of the sampling locations. A 52 point mixed sampling density survey was performed at a site near Maynooth, Co. Kildare, and a second 58 survey undertaken at Dublin City University (DCU). At Maynooth, high concentrations of Pb (above 110 mg/kg) were found close to the site where a local canal meets a road. At the DCU site, results indicate high Pb concentrations (above 160 mg/kg) near a busy main road. Geostatistical techniques were used to generate concentration prediction and critical threshold contour surfaces for both sites. Linked with GPS coordinates for each sampling location, this technology enables the distribution of multiple elements to be mapped over wide areas in a relatively short time. Supplemental materials are available for this article. Go to the publisher's online edition of Spectroscopy Letters to view the supplemental file.     

Airborne Nitrogen Input at Four Locations in the German State of Saxony-Anhalt - Measurements using the 15N-Based ITNI-System

Abstract

The amount of atmospheric N deposition in Germany is actual rather uncertain. Estimates using standard methods indicate an N deposition of 30–35 kg N/ha × year. However, the results of long-term field experiments and newly by the ITNI (Integrated Total Nitrogen Input) system could prove a much higher N input of about 50–60 kg N/ha × year. The reason for this difference is that standard methods use wet-only or bulk collectors, which neglect gaseous and organic N deposition as well as direct N uptake by aerial plant parts. By contrast, the ITNI-system is able to measure the total atmospheric N input using the ¹⁵N isotope dilution method. The input of airborne N into a soil/plant system leads to a dilution of the abundance of a previously applied ¹⁵N tracer over a defined time period. The atmospheric N deposition can be calculated from this dilution.

To estimate the actual N input in Central Germany, ITNI measurements were carried out from autumn 1998 to autumn 2000 at four locations in the German state of Saxony-Anhalt. Atmospheric N depositions between 45 and 75 kg N/ha × year were determined depending on the location. These results closely match to N balances of longterm field experiments. Furthermore, a relationship was found between N deposition and the plant species used as well as plant development.     

Nitrogen-15 Leaching Under Temporarily Weedy Maize

Abstract

In pot experiments the effect of a temporary infestation of maize by Chenopodium album L. on water and nitrogen leaching after a simulated strong rainfall was tested for a silty loam and a loamy sand. The results show that the leaching of ¹⁵N under the initial stage of maize can be reduced considerably by a temporarily weed infestation. Neither yield of maize nor uptake of nitrogen until corn maturity were reduced on both a silty loam and a loamy sand.     

Some Considerations with Regard to the Quality of Results of Analysis of Trace Element Extractable Contents in Soil and Sediment

Abstract

Attention is drawn to the necessity to demonstrate accuracy of analytical results in order to make them comparable with results obtained elsewhere in the world. Besides the general aspects of quality management (e.g. within and between laboratories), attention is paid to the pitfalls that may occur in soil and sediment extract analysis. Especially the practical aspects of calibration are being dealth with.     

Sensitive GC/MS determination of 15 isomers of chlorobenzoic acids in accelerated solvent extracts of soils historically contaminated with PCBs and validation of the entire method

Chlorobenzoic acids (CBAs) are the major metabolite of aerobic bacterial degradation of polychlorinated biphenyls (PCBs). A rapid and simple simultaneous derivatisation method has been developed for gas chromatography-mass spectrometry determination in historically PCB-contaminated soils for 15 isomers of mono-, di-, tri-, tetra-, and pentachlorobenzoic acids in CBA mixtures. Two derivatisation agents (diazomethane and methyl chloroformate) and various conditions were evaluated (temperature, time, solvents, catalysts) in terms of efficiency. The optimised derivatisation method with diazomethane and 1% methanol running 1 hour at 5°C was used for derivatisation of extracts of soils and river sediment from historically PCB-contaminated sites; the extracts were prepared using accelerated solvent extraction by a previously described method. Methylated CBAs were separated by gas chromatography using a system with two different common columns, DB-5 and DB-200, in series-coupled (tandem) arrangement and detected by EI-MS. A clean-up with a gel permeation chromatography was carried out to remove soil interfering matrix compounds as well as major portion of PCBs. The limits of quantification ranged between 1 and 10 ng g^?1 of individual CBA in the soil. The procedure was applied to various soil samples from Lhenice (Czech Republic) highly contaminated with PCBs. CBAs were found in all tested soils and also in the river sediment. The most contaminated soil contained all CBAs representatives under the study with a total concentration of 3.1 µg g^?1 of dry soil.