Polyenic pigments from the Brazilian octocoral Phyllogorgia dilatata Esper, 1806 characterized by Raman spectroscopy

Phyllogorgia dilatata is a Brazilian endemic gorgonian with a natural color ranging from white to pale yellow. An unusual violet pigmentation has been observed in colonies with tissue damage and skeleton anomalies. In order to investigate the chemical composition of these pigments, we have used in situ Raman spectroscopy to characterize the white/cream and violet tissues as well as sclerites, a skeletal component consisting of calcite, from both samples. Violet/purple pigmentation surrounding tissue necrosis is characterized as purpling, in response to fungus infection and allelopathic interactions. The spectroscopic analysis of the white‐cream tissues, designated as healthy, has revealed the presence of the carotenoid peridinin, typical of the endosymbiont that harbors this species; however, peridinin was not observed in the colorless sclerites analysis, presenting bands exclusively of calcite. In contrast, the violet coloration of damaged tissue has also been observed in the sclerites. Both showed Raman bands corresponding to unmethylated polyunsaturated aldehyde, besides calcite bands. This is the first report of purpling in a Brazilian octocoral, identified as a derivative of the biochromes named psittacofulvins, which have been reported as exclusive in parrots. Copyright © 2011 John Wiley & Sons, Ltd.     

Experimental and theoretical studies on corals. I. Toward understanding the origin of color in precious red corals from Raman and IR spectroscopies and DFT calculations

An attempt to explain the origin of the vivid red color in precious pink and red corals was undertaken. Raman and IR spectroscopies were applied to characterize white, pink and red corals. The position of the Raman signal near 1500 cm⁻¹ of some corals and pearls was associated by several authors with the presence of the mixture of all‐trans‐polyenic pigments, containing 6–16 conjugated CC bonds or β‐carotenoids. This hypothesis was examined theoretically by performing extensive B3LYP‐DFT calculations of vibrational spectra of the model polyenic compounds. The B3LYP/6‐311++G** predicted positions of the dominating Raman mode depend on the number of CC units (Cn parameter) and can be accurately predicted for larger systems from a simple nonlinear fit. The DFT‐predicted Raman activities of these modes are extremely sensitive to Cn, and sharply increase with the number of double bonds. This implies a presence of only—two to three polyenes differing slightly in the number of CC units as the source of color in pink and red corals. Copyright © 2009 John Wiley & Sons, Ltd.     

Synthesis,crystal structure studies and solvatochromic behaviour of two 2‐{5‐[4‐(dimethylamino)phenyl]penta‐2,4‐dien‐1‐ylidene}malononitrile derivatives

The synthesis, crystal structure studies and solvatochromic behavior of 2‐{(2E,4E)‐5‐[4‐(dimethylamino)phenyl]penta‐2,4‐dien‐1‐ylidene}malononitrile, C₁₆H₁₅N₃ (DCV[3]), and 2‐{(2E,4E,6E)‐7‐[4‐(dimethylamino)phenyl]hepta‐2,4,6‐trien‐1‐ylidene}malononitrile, C₁₈H₁₇N₃ (DCV[4]), are reported and discussed in comparison with their homologs having a shorter length of the π‐conjugated bridge. The compounds of this series have potential use as nonlinear materials with second‐order effects due to their donor–acceptor structures. However, DCV[3] and DCV[4] crystallized in the centrosymmetric space group P2₁/c which excludes their application as nonlinear optical materials in the crystalline state. They both crystallize with two independent molecules having the same molecular conformation in the asymmetric unit. The series DCV[1]–DCV[4] demonstrated reversed solvatochromic behavior in toluene, chloroform, and acetonitrile.     

Organic Photocatalytic Cyclization of Polyenes: A Visible‐Light‐Mediated Radical Cascade Approach

A visible‐light‐mediated, organic photocatalytic stereoselective radical cascade cyclization of polyprenoids is described. The desired cascade cyclization products are achieved in good yields and high stereoselectivities with eosin Y as photocatalyst in hexafluoro‐2‐propanol. The catalyst system is also suitable for 1,3‐dicarbonyl compounds, which require only catalytic amounts of LiBr to promote the formation of the corresponding enols.     

Theoretical study of the π→π* excited states of linear polyenes: The energy gap between 11Bu+ and 21Ag− states and their character

Multireference perturbation theory with complete active space self-consistent field (CASSCF) reference functions is applied to the study of the valence π→π* excited states of 1,3-butadiene, 1,3,5-hexatriene, 1,3,5,7-octatetraene, and 1,3,5,7,9-decapentaene. Our focus was put on determining the nature of the two lowest-lying singlet excited states, 1¹B_u⁺ and 2¹A_g⁻, and their ordering. The 1¹B_u⁺ state is a singly excited state with an ionic nature originating from the HOMO→LUMO one-electron transition while the covalent 2¹A_g⁻ state is the doubly excited state which comes mainly from the (HOMO)²→(LUMO)² transition. The active-space and basis-set effects are taken into account to estimate the excitation energies of larger polyenes. For butadiene, the 1¹B_u⁺ state is calculated to be slightly lower by 0.1 eV than the doubly excited 2¹A_g⁻ state at the ground-state equilibrium geometry. For hexatriene, our calculations predict the two states to be virtually degenerate. Octatetraene is the first polyene for which we predict that the 2¹A_g⁻ state is the lowest excited singlet state at the ground-state geometry. The present theory also indicates that the 2¹A_g⁻ state lies clearly below the 1¹B_u⁺ state in decapentaene with the energy gap of 0.4 eV. The 0–0 transition and the emission energies are also calculated using the planar C_2h relaxed excited-state geometries. The covalent 2¹A_g⁻ state is much more sensitive to the geometry variation than is the ionic 1¹B_u⁺ state, which places the 2¹A_g⁻ state significantly below the 1¹B_u⁺ state at the relaxed geometry. © 1998 John Wiley & Sons, Inc. Int J Quant Chem 66 : 157–175, 1998     

The Diversity of Linear Conjugated Polyenes and Colours in Nature: Raman Spectroscopy as a Diagnostic Tool

This review is centered on the linear conjugated polyenes, which encompasses chromatic biomolecules, such as carotenoids, polyunsaturated aldehydes and polyolefinic fatty acids. The linear extension of the conjugated double bonds in these molecules is the main feature that determines the spectroscopic properties as light-absorbing. These classes of compounds are responsible for the yellow, orange, red and purple colors which are observed in their parent flora and fauna in nature. Raman spectroscopy has been used as analytical tool for the characterization of these molecules, mainly due to the strong light scattering produced by the delocalized pi electrons in the carbon chain. In addition, conjugated polyenes are one of the main target molecular species for astrobiology, and we also present a brief discussion of the use of Raman spectroscopy as one of the main analytical tools for the detection of polyenes extra-terrestrially.     

Effect of substituents and conjugated chain length on the UV spectra of α,ω‐di‐substituted phenyl polyenes

A series of α,ω‐di‐substituted phenyl polyenes, p‐X–Ph(CH = CH)_nPh–p‐Y (n = 1, 2, or 3) were synthesized, and their ultraviolet (UV) absorption maximum wavelength were determined. The correlation between molecular structure and the maximum wavelength energy (wavenumber/cm^?1) was carried out. The results show that the maximum wavelength energy of the title compounds is mainly affected by both substituent excited‐state parameters and maximum wavelength energy of the parent molecule. However, the two influence factors are not independent, and the action of substituent is governed by the parent molecular absorption energy. In the case of the compounds containing NO₂ or NH₂ groups, the influence of interaction of polarity parameters on the maximum wavelength energy must also be considered. In addition, the exploration was also made for the quantifying correlation of UV absorption maximum wavelength energy with the conjugated polarizability potential CPP replacing the parent molecular absorption energy. And the results indicate that the equation with CPP parameters is more accurate and convenient. Copyright © 2013 John Wiley & Sons, Ltd.     

Epipyrone A,a Broad-Spectrum Antifungal Compound Produced by Epicoccum nigrum ICMP 19927

We have isolated a filamentous fungus that actively secretes a pigmented exudate when growing on agar plates. The fungus was identified as being a strain of Epicoccum nigrum. The fungal exudate presented strong antifungal activity against both yeasts and filamentous fungi, and inhibited the germination of fungal spores. The chemical characterization of the exudate showed that the pigmented molecule presenting antifungal activity is the disalt of epipyrone A—a water-soluble polyene metabolite with a molecular mass of 612.29 and maximal UV–Vis absorbance at 428 nm. This antifungal compound showed excellent stability to different temperatures and neutral to alkaline pH.