Isomer combinatorics for acyclic conjugated polyenes: enumeration and beyond

A combinatorial approach to fully conjugated acyclic polyenes (C _N H _{N +2}) is considered with a view to the extension of standard enumeration techniques to treat a widened range of chemically interesting features. As a first step, enumerations are made respecting: placement of single and double bonds, the occurrence of cis/trans isomers, and the degree (and type) of “radicality” of such conjugated networks. As a further extension, several structural (graph-theoretic) invariants averaged over various types of isomer classes and sub-classes are made, and then these invariants are utilized to estimate several physicochemical properties averaged over these same classes or sub-classes. The properties currently so considered are heats of formation, indices of refraction, and magnetic susceptibilities. Finally, the asymptotic behaviors of isomer counts and isomer properties in the many-atom limit is elaborated. Received: 10 August 1998 / Accepted: 17 November 1998 / Published online: 16 March 1999     

Time‐dependent local‐density approximation in real time: Application to conjugated molecules

The time‐dependent local‐density approximation (TDLDA) is applied to the optical response of conjugated carbon molecules in the energy range of 0–30 eV, with calculations given for carbon chains, polyenes, retinal, benzene, and C₆₀. The major feature of the spectra, the collective π–π* transition, is seen at energies ranging from below 2 to 7 eV and is reproduced by the theory to a few tenths of an electron volt with a good account of systematic trends. However, there is some indication that TDLDA predicts too much fragmentation of the strength function in large molecules. Transition strengths are reproduced with a typical accuracy of 20%. The theory also predicts a broad absorption peak in the range of 15–25 eV, and this feature agrees with experiment in the one case where quantitative data is available (benzene). ©1999 John Wiley & Sons, Inc. Int J Quant Chem 75: 55–66, 1999     

Compensation effect in the electrical conduction process in a series of pyrenyl polyenes

The semiconductive properties of a series of pyrenyl polyenes of the type R-(CH=CH)_n-R, are studied as a function of the adsorption of different amount of a vapour. With regard to the compensation temperature (T ₀) the compounds are divided into two groups. For compounds which have odd number of double bonds,T ₀ is infinite and in compounds having even number double bonds,T ₀ is finite.T ₀ for II₂ is higher while that of II₄ is lower than the experimental temperature. DifferentT ₀ for the compounds having odd or even number of double bonds suggests a physical basis for the compensation rule, which we believe, is related to the molecular and crystalline structure of the compounds     

Laetiporic acid, a new polyene pigment from the wood-rotting basidiomycete Laetiporus sulphureus (Polyporales, Fungi)

A new pigment, laetiporic acid, has been isolated from fruit-bodies of the wood-rotting fungus Laetiporus sulphureus (sulfur shelf). Structure elucidation by application of extensive 2D NMR techniques permitted its identification as a polyene of non-isoprenoid origin. Laetiporic acid, which represents the main pigment in L. sulphureus basidiocarps, bears an unprecedented decaene skeleton as part of its chromophore and, interestingly, contains double bonds with a stable cis configuration.     

Effect of inclusion of electron correlation in MM3 studies of cyclic conjugated compounds

Electron correlation at the Møller–Plesset second-order level was incorporated into the π-system portion of MM3 calculations for several conformers of [10]annulene, [18]annulene, bicyclo[5.3.1]undecapentaene, and bicyclo[4.4.1]undecapentaene. The conformers with “localized” C(SINGLE BOND)C π bonds (strongly alternating bond lengths) were found to be of lower energy than their counterparts with “delocalized” C(SINGLE BOND)C π bonds (similar bond lengths) before correlation energy was included. Correlation always lowered the energies of the delocalized conformation more than it did that of the localized conformation, such that often the latter was found to be more stable after correlation energy was included in the calculation. When a delocalized structure was not at a stationary point on the MM3 energy surface, such comparison could not be made. An example is the porphin molecule. © 1998 John Wiley & Sons, Inc. J Comput Chem 19: 475–487, 1998     

New Polyenes from the Marine-Derived Fungus Talaromyces cyanescens with Anti-Neuroinflammatory and Cytotoxic Activities

Three new polyene compounds, talacyanols A–C (1–3), along with two known compounds, ramulosin (4) and eurothiocin A (5), were isolated from the marine fungus Talaromyces cyanescens derived from a seaweed Caulerpa sp. Structures of 1–5 were established by one-dimensional and two-dimensional (1D/2D) NMR, HR-ESIMS, and the modified Mosher’s methods, as well as comparison with previously reported literature data. All the compounds (1–5) were tested for their in vitro cytotoxic and anti-neuroinflammatory activities. Among them, 1 showed moderate cytotoxic activity against a panel of cancer cell lines (HCT-15, NUGC-3, NCI-H23, ACHN, PC-3, and MDA-MB-231) with GI₅₀ values ranging from 44.4 to 91.6 μM, whereas compounds 2 and 5 exhibited anti-neuroinflammatory effect without cytotoxicity against all the tested cell lines.     

Synthesis of Symmetrical and Nonsymmetrical Polyenes by Iterative and Bidirectional Palladium-Catalyzed Cross-Coupling Reactions

Bifunctional unsaturated reagents designed to undergo palladium-catalyzed cross-coupling reactions with complementary polyenyl connective fragments are highly useful for the undoubtedly challenging synthesis of polyenes. The current toolkit of building blocks for the bidirectional formation of Csp²−Csp² single bonds of polyenes includes homo-bisfunctionalized reagents with equal or unequal reactivity (due to steric and/or electronic factors), and hetero-bisfunctionalized counterparts containing either two different nucleophiles, two electrophiles or one of these functionalities and a latent nucleophile that can be unmasked when desired. The combination of these bifunctional linchpin reagents using tactics that modulate the reactivity of each terminus in order to achieve the required connection have streamlined the synthesis of polyenes of great complexity using (iterative) cross-coupling methods for Csp²−Csp² bond formation. Reaction conditions for the Pd-catalyzed cross-coupling reactions are mild and functional-group-tolerant, and therefore these protocols allow to construct the polyene structures using shorter unsaturated reactants with the desired geometries, since in general the products preserve the stereochemical information of the connected cross-coupling partners.     

An analysis of bivalve larval shell pigments using micro‐Raman spectroscopy

Micro‐Raman spectroscopy has been used on adult bivalve shells to investigate organic and inorganic shell components but has not yet been applied to bivalve larvae. It is known that the organic matrix of larval shells contains pigments, but less is known about the presence or source of these molecules in larvae. We investigated Raman spectra of seven species of bivalve larvae to assess the types of pigments present in shells of each species and how the ratio of inorganic : organic material changes in a dorso‐ventral direction. In laboratory experiments, we reared larvae of three clam species in waters containing different organic signatures to determine if larvae incorporated compounds from source waters into their shells. We found differences in spectra and pigments between most species but found less intraspecific differences. A neural network classifier for Raman spectra classified five out of seven species with greater than 85% accuracy. There were slight differences between the amount and type of pigment present along the shell, with the prodissoconch I and shell margin areas being the most variable. Raman spectra of 1‐day‐old larvae were found to be differentiable when larvae were reared in waters with different organic signatures. With micro‐Raman spectroscopy, it may be possible to identify some unknown species in the wild and trace their natal origins, which could enhance identification accuracy of bivalve larvae and ultimately aid management and restoration efforts. Copyright © 2014 John Wiley & Sons, Ltd.