表皮生长因子受体和抑制剂之间分子对接的研究

研究了表皮生长因子受体(EGFR)和4-苯胺喹唑啉类抑制剂之间的相互作用模式，表皮生长因子受体的三维结构通过同源蛋白模建的方法得到，而抑制剂和靶酶结合复合物结构则通过分子力学和分子动力学结合的方法计算得到。从模拟结果得到的抑制剂和靶酶之间的相互作用模式表明范德华相互作用、疏水相互作用以及氢键相互作用对抑制剂的活性都有重要的影响，抑制剂的苯胺部分位于活性口袋的底部，能够与受体残基的非极性侧链产生很强的范德华和疏水相互作用，抑制剂双环上的取代基团也能和活性口袋外部的部分残基形成一定的范德华和疏水性相互作用，而抑制剂喹唑啉环上的氮原子能和周围的残基形成较强的氢键相互作用，对抑制剂的活性有较大的影响，计算得到抑制剂和靶酶之间的非键相互作用能以及抑制剂和靶酶之间的相互作用信息能够很好地解释抑制剂活性和结构的关系，为全新抑制剂的设计提供了重要的结构信息。     

Synthesis and Expression in Escherichia coli of a Human Neutrophil Activating Protein-1/Interleukin-8 Gene

The complete gene coding for human neutrophilactivating protein-1/interleukin-8 was synthesized using a semi-chemical semi-enzymatic method. The synthetic gene was then overexpressed in Escherichia coli under the temperature-regulated control of the P_RP_L tandem promoters. As determined by SDS-PAGE and densitometry, the overexpressed protein comprised up to 18.5% and 10.9% of the total soluble protein in E. coli cells grown in shake flasks and in batch fermentation, respectively. The recombinant NAP-1/IL-8 was then purified to>95% homogeneity by gel filtration and cation exchange chromatography. The purified protein appeared as a single band on the SDS-PAGE gel and possessed potent chemotactic activity in the concentration of <10 ng/ml, as assayed by the agarose plate method. An early skin reactivity was also observed when the pure NAP-1/IL-8 was injected subcutaneously into the rabbits. The N-terminal 36 amino acid sequence of the recombinant NAP1/IL-8 was determined using the Edman method and was sho     

The static dielectric constant of solutions of water inn-alcohols at 15, 25, 35, and 45°C

Dielectric constants (measured at 1 MHz) are reported for solutions of water (concentration range 0 to 0.2 mole fraction) in 1-propanol at 25°C, and in 1-butanol, 1-pentanol, and 1-hexanol at 15, 25, 35, and 45°C. These results, together with literature values for solutions of water in methanol, ethanol, 1-heptanol, and 1-octanol, show that water interacts with alcohols in at least two ways: (1) it can participate in the formation of dynamic hydrogen-bonded chains, thereby raising the polarizability; (2) it can form relatively stable structures such as H₂O(ROH)₄ which have zero net dipole moment and consequently diminish volume polarizability. For C _n H _2n+1 OH alcohols,n≥4, most of the initially added water forms complexes: consequently, addition of water to these alcohols lowers the dielectric constant.     

Interaction of blockcopolymer micelles as probed by small-angle neutron and by small-angle X-ray scattering

 The analysis of the interaction of micelles formed by a blockcopolymer is given by means of small-angle X-ray (SAXS) and small-angle neutron scattering (SANS). The blockcopolymer consists of poly(styrene) and poly(ethylene oxide) (molecular weight of each block: 1000 g/mol) and forms well-defined micelles (weight-association number: 400, weight-average diameter: 15.4 nm) in water. The internal structure has been studied previously (Macromolecules 29:4006 (1996)) by SAXS. There it has been shown that the micelles are spherical objects. The structure factor S(q) as a function of the scattering vector q (q=(4π/λ) sin (θ/2); λ: wavelength of the radiation in the medium; θ: scattering angle) can be extracted from both sets of small-angle scattering data (SANS: q≤0.4 nm^-1; SAXS: q≤0.6 nm^-1). It is shown that particle interaction in the present system can be described by assuming soft interaction which is modeled by a square-step potential. Received: 12 May 1997 Accepted: 9 July 1997     

Dissociation of Fumaric Acid: Spectrophotometric Investigation in Aqueous Solutions from 10 to 90 <Superscript>∘</Superscript>C and Theoretical Considerations

The dissociation constants of fumaric acid were extracted from UV-vis spectra in the 10–90 ^∘C range. These values were used to extract thermodynamic parameters that showed the temperature effects on the dissociations reactions to be dominantly driven by the solvent. The molar absorption coefficients for the fumaric acid, the bifumarate and fumarate species, can be accurately reproduced with the two-term Gauss–Lorentz equation. Deconvolution of these bands showed strong π–π^∗ transitions for all species and weaker charge-transfer-to-solvent transitions for the charged species. TD-DFT calculations were used to identify the most important molecular orbitals involved in the vertical excitations of the fumaric acid species. The electron population and their states of delocalization were also estimated with topological analyses of the electron density and of the Becke–Edgecombe Electron Localization Function.     

Description of the Structure and Properties of Atactic Polystyrene Melt Using Integral Equation Theory

The polymer reference interaction site model （PRISM） integral equation theory was used to describe the structure and thermodynamic properties of atactic polystyrene （aPS） melt, in which the monomer of aPS is represented with an eight-site model to characterize its microstructure. The intramolecular structure factors needed in the PRISM calculations were obtained from single chain MD simulations. The calculated results indicate that the results by the integral equation method agrees well with experiments, and can reflect the fine microscopic structure of real aPS melt. This work shows that the PRISM theory is a powerful tool for investigating the structure and properties of complex polymers.     

AES investigations on starting powders for high performance ceramics

AES depth profiles on ceramic powders (untreated/hydrolyzed/oxidized/ (Al, Y)₂O₃ coated Si₃N₄, [BaO, SiO₂] coated Al₂O₃) are feasible on thin, homogeneous layers or m sized agglomerations prepared on an Au foil. By means of the depth profiles one can qualitatively characterize the coating around the particles. Factor analysis of the depth profiles on the differently treated Si₃N₄ powders suggests the existence of an Si₂N₂O phase on the oxidized sample.Dedicated to Professor Günther Tölg on the occasion of his 60th birthday     

Random walk properties of lattices and correlation factors for diffusion via the vacancy mechanism in crystals

Random walk properties and correlation factors for diffusion via the vacancy mechanism are calculated and compared for various three-dimensional lattices. By applying the theory of random walks on an imperfect lattice, the correlation factor for impurity diffusion is calculated rigorously for the five jump frequency model in the fee lattice.Presented at the Symposium on Random Walks, Gaithersburg, MD, June 1982.     

GIF S-亚硝基化的一些见解

Neural growth inhibitory factor （GIF）, a member of metallothionein family （metallothionein-3, MT3）, was well known by its distinct neural growth inhibitory activity, which is not shown by other MT isoforms. However, till now, people still did not know clearly how GIF exerts its biological functions. Since it has been reported that GIF might serve as NO scavenger and was related to the release of zinc, our study was focused on the interaction of GIF and NO. By studying the reactions of human GIF and human MTlg with SNOC-a type of NO donor, it was found that GIF was more reactive than MT-lg toward SNOC. In order to further figure out if the high reactivity of GIF in this reaction resulted from the acid-base catalysis, several mutants were constructed： E23K, E41G/E43A, E23K/E41G/E43A. By studying their basic properties and the reactions toward SNOC, it was found that the S-nitrosylation of GIF was not only related to the acid-base catalysis, but also to the accessibility of metal-thiolate clusters.