Effect of the environment on the stability of surfactant–polypeptide self‐assembled complexes: Molecular dynamics simulations of stoichiometric complexes formed by N‐dodecyltrimethylammonium and poly(α,L‐glutamate) in chloroform,methanol, and water

A series of molecular dynamics simulations have been performed to study the supramolecular structure of self‐assembled complexes formed by N‐dodecyltrimethylammonium cations and the synthetic polypeptide poly(α,L ‐glutamate). The influence of the type of solvent has been investigated, considering explicit environments of chloroform, water, and methanol on a stoichiometric complex containing 15 residues. In chloroform, the complex stabilizes in a regular structure: the polypeptide adopts an α‐helix conformation that is regularly surrounded by surfactant molecules to form electrostatic interactions through a multiple interaction pattern. However, this structure destabilizes in methanol and water: (a) the α‐helix unfolds in the two solvents and (b) the electrostatic links between the surfactant molecules and the polyanion are disrupted in aqueous solution, although these interactions are still preserved in methanol. The role of the solvent environment in stabilizing or destabilizing the polypeptide secondary structure, the organization of the surfactant molecules, and predominantly the surfactant–polypeptide supramolecular organization is discussed in detail. © 2006 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 44: 1122–1133, 2006     

Molecular deposition film of porphyrin and phthalocyanine bearing oppositely charged substituents

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On the Snider equation

We study the physical content of the Snider quantum transport equation and the origin of a puzzling feature of this equation, which implies contradictory values for the one-particle density operator. We discuss in detail why the two values are in fact not very different provided that the studied particles have sufficiently large wave packets and only a small interaction probability, a condition which puts a limit on the validity of the Snider equation. In order to improve its range of application, we propose a reinterpretation of the equation as a mixed equation relating the real one-particle distribution function (on the left-hand side of the equation) to the free distribution (on the right-hand side), which we have introduced in a recent contribution. In its original form, the Snider equation is valid only when used to generate Boltzmann-type equations where collisions are treated as point processes in space and time (no range, no duration); in this approximation, virial corrections are not included, so that the real and free distributions coincide. If the equation is used beyond this approximation to generate nonlocal and density corrections, we conclude that the results are not necessarily correct.     

Asymptotic behavior of energy band associated with a negative energy level

The mathematical foundation of the tight binding approximation is given. If ₀ is a negative energy level of a real potentialq, then there exists an energy band for a one-dimensional chain with period 2T of the same atoms which lies near ₀. We study this band whenT tends to infinity.On leave of absence from the Department of Physics, Leningrad State University, Leningrad, USSR.     

Purification and partial characterization of two lectin isoforms fromCratylia mollis mart. (camaratu bean)

Two additional electrophoretically distinct molecular forms, isoforms (iso) 2 and 3, with lectin properties were isolated fromCratylia mollis Mart, seeds (FABACEAE), by extraction with 0.15M NaCl and ammonium sulfate fractionation, followed by chromatography on Sephadex G-75 and Bio-Gel P-200 (iso 2), as well as CM-Cellulose and Sephadex G-75 (iso 3). Both isoforms were human group nonspecific and showed distinct specificity. Polyacrylamide gel electrophoresis resolved iso 2 and 3 in polypeptides of apparent mol wts 60 and 31 kDa, respectively; a distinct isoelectric focusing pattern was obtained for iso 2 and 3, under denaturing and reducing conditions.     

α—甲基苯乙烯离子聚合体分子量分布

聚α-甲基苯乙烯-丁二烯-α-甲基苯乙烯嵌段共聚物是一种性能优异的热塑性弹性体。常温下,α-甲基苯乙烯的聚合是在极性添加剂存在下进行的,添加剂的种类,用量及聚合温度不仅影响聚合动力学,尚且影响聚合物分子量及其分布,控制α-甲基苯乙烯聚合速率、     

几种改进的CoMFA方法比较研究血小板活化因子拮抗剂

由于传统的比较分子场分析(CoMFA)方法本身存在一些缺陷，使得分子的叠合 规则以及叠合分子的空间取向和空间位置等因素对q~2的影响很大，因此相继提出 了几种改进的CoMFA方法。为了优化CoMFA结果，应用传统的CoMFA方法和交叉验证 的R~2引导的区域选择法(q~2-GRS)、全取向搜索法（AOS）、全空间搜索法（APS） 以及比较分子相似性指数(CoMSIA)等四种改进的CoMFA方法，对18个pinusolide类 衍生物这类新发现的血小板活化因子（PAF）拮抗剂进行了比较研究。结果表明四 种改进的CoMFA方法得到的q~2值均比传统CoMFA的高。q~2-GRS方法得到的q~2值有 所提高，但综合结果并不理想，AOS与APS得到的q~2较为理想，而在CoMSIA中， q~2几乎不受空间取向或空间位置的影响。同时我们引人基于样本的偏最小二乘法 （SAMPLS）取代原AOS／APS程序中的传统PLS进行统计分析，明显提高了其运行速 度。最后，根据q~2最高的CoMFA模型和CoMSIA模型设计了几个预测活性更高的 pinusolide类似物。     

Interaction of 4-Isopropoxalyl-1,5-diphenyl-2,3-dihydro-2,3-pyrroledione with Thiosemicarbazide: Synthesis and Crystal and Molecular Structure of (3aS*)(4R*)(6aR*)-4,6a-dihydroxy-4-isopropoxycarbonyl-1-thiocarbamoyl-3,5-diphenyl-1,3a,4,5,6,6a-hexahydropyrrolo[3,4-d]pyrazol-6-one

4-Isopropoxalyl-1,5-diphenyl-2,3-dihydro-2,3-pyrroledione reacts with thiosemicarbazide to form (3aS*)(4R*)(6aR*)-4,6a-dihydroxy-4-isopropoxycarbonyl-1-thiocarbamoyl-3,5-diphenyl-1,3a,4,5,6,6a-hexahydropyrrolo[3,4-d]pyrazol-6-one. The molecular and crystal structure of the latter was studied by single crystal X-ray diffraction.     

Synthesis of molecular sieve AlPO4-12

A member of the novel family of crystalline microporous aluminophosphates, AlPO₄-12, was synthesized by hydrothermal crystallization using different aluminum-containing compounds. Three new crystalline phases were obtained by varying the composition of the reaction mixture. The effect of the synthesis conditions on the hudrothermal process and the kinetics of crystallization are discussed. The apparent activation energies obtained for AlPO₄-12 are 20.9 and 14.6 kcal/mol for nucleation and crystallization, respectively. The adsorption isotherms of one AlPO₄-12 product were measured.     

Comparison of localization and delocalization indices obtained with Hartree-Fock and conventional correlated methods: effect of Coulomb correlation

Atomic populations and localization [lambda(A)] and delocalization [delta(A,B)] indices (LIs and DIs) are calculated for a large set of molecules at the Hartree-Fock (HF), MP2, MP4(SDQ), CISD, and QCISD levels with the 6-311++G(2d,2p) basis set. The HF method and the conventional correlation methods [MP2, MP4(SDQ), CISD, and QCISD] yield distinct sets of LIs and DIs. Yet, within the four conventional correlation methods the differences in atomic populations and LIs and DIs are small. Relative to HF, the conventional correlation methods [MP2, MP4(SDQ), CISD, QCISD] yield virtually the same LIs and DIs for molecules with large charge separations while LIs and DIs that differ significantly from the HF values--the LIs are increased and DIs decreased--are obtained for bonds with no or small charge separations. Such is the case in the archetypal homopolar molecules HC(triple bond)CH, H2C=CH2, CH3-CH3, and "protonated cyclopropane" C(3)H(7) (+), in which case the bonding may be atypical. Relative to HF, the typical effect of the conventional correlation methods is to decrease the DI between atoms.