A computational study of model hydrogen-, halogen-, beryllium- and magnesium-bonded complexes of aziridine derivatives

ABSTRACT

A computational study of the complexes F^?/H₂O…Z-aziridine, Z-aziridine…BeH₂/MgH₂ and F^?/H₂O…Z-aziridine…BeH₂ /MgH₂ (Z = Cl, H, Li) was undertaken in order to investigate the non-covalent interactions operative in the dimers and to assess their interplay in the trimer complexes. The halogen- and hydrogen-bonds between the O and Z atoms in F^?/H₂O…Z-aziridine are enhanced in the trimers by the Be(Mg) bond and vice versa, but the lithium bond is hardly affected. In the trimers containing F^?, the H bond is more dominant than the Be(Mg) bond, whereas the Be(Mg) bond is more dominant in the halogen- and lithium-bonded analogues. On the other hand, the Be(Mg) bond makes the major contribution to the energetic stability of all of the trimers containing H₂O.     

A Thermodynamic Study on the Binding of PEG-Stearic Acid Copolymer with Lysozyme

The thermodynamics of the interaction between a copolymer of polyethyleneglycol400-stearic acid, S400, and lysozyme was investigated at pH=7.0 and 27 °C in phosphate buffer by isothermal titration calorimetry, ITC. The extended solvation model was used to reproduce the enthalpies of the S400 + lysozyme interactions. The solvation parameters recovered from the extended solvation model are attributed to the structural change of lysozyme and its biological activity. The binding parameters found for the interaction of S400 with lysozyme indicate that at low concentrations of S400, the lysozyme structure was destabilized but at higher concentrations of S400 lysozyme it was stabilized by S400. It is suggested that S400 interacts with a set of three identical binding sites on lysozyme.     

Anticooperativity of FH···Cl− hydrogen bonds in [FH)nCl]− clusters (n = 1…6)

The change of cooperativity of FH···Cl⁻ hydrogen bonds upon sequential addition of up to six FH molecules to the Cl⁻ first coordination sphere is investigated. The geometry of clusters [(FH) _nCl]⁻ (n = 1…6) was calculated (CCSD/aug-cc-pVDZ) and compared with [(FH) _nF]⁻ clusters. The geometry is determined by the symmetry-driven electrostatic requirements and also by the fact that formation of each new FH···Cl⁻ bond creates a depression in the chlorine's electron cloud on the opposite side of Cl⁻ (σ-hole), which limits the range of directions available for subsequent H-bond formation. The mutual influence of FH···Cl⁻ hydrogen bonds is anticooperative—the addition of each FH molecule weakens H-bonds by 23–16% and decreases their covalent character (as seen by LMO-EDA decomposition and QTAIM analysis). Anticooperativity effects could be tracked by spectroscopic parameters (frequency of local HF mode ν_FH, chemical shift δ_H, spin–spin coupling constants ¹J_FH, ^1hJ_HCl, ^2hJ_FCl and nuclear quadrupolar constants χ_18F, χ_D, and χ_35Cl. © 2019 Wiley Periodicals, Inc.     

Influence of substituents and cooperativity in doubly hydrogen-bonded complexes of 2-pyridone and oxalic acid

We performed a systemic investigation of the substitution and cooperative effects on the O–H···O and N–H···O H-bonds in the complexes of 2-pyridone and its derivatives with oxalic acid. Generally, the electron-withdrawing substituent in 2-pyridone weakens the O–H···O H-bond but strengthens the N–H···O H-bond, while the opposite effect is for the electron-donating group. In addition, the substitution effect is associated with its substitution position in 2-pyridone. The total interaction energy of a chainlike trimer with oxalic acid as a middle molecule exhibits some additivity. When oxalic acid combines with two 2-pyridone/2-pyridinethione molecules, the O–H···O/S H-bond is weakened but the N–H···O H-bond is enhanced. When three oxalic acid molecules are linked by the double O–H···O H-bonds, one H-bond with the middle oxalic acid as the proton donor is weakened and the other H-bond with the middle oxalic acid as the proton acceptor is strengthened.     

Weak interactions and cooperativity effects on disiloxane: a look at the building block of silicones

The behaviour of disiloxane 1 towards a set of Lewis acids (LA) and Lewis bases (LB) forming complexes through its oxygen and silicon atoms, respectively, was studied at the MP2/aug′-cc-pVTZ level of theory, exploring a wide variety of non-covalent interactions. Disiloxane is a moderate electron acceptor and a good electron donor, exhibiting in the latter case binding energies up to almost ?100 kJ/mol with BeCl₂. Cooperativity effects were also analysed by looking at ternary 1:LA:LB complexes. Shorter intermolecular distances than in the corresponding binary complexes and a negative contribution of the three-body term to the binding energy indicate that the non-covalent interactions allowed by disiloxane through its acid and basic centres cooperate between them to reinforce both donor–acceptor pairs. These effects are particularly strong in complexes involving beryllium and triel bonds, but are also relevant for complexes containing hydrogen bonds.     

Chalcogen bonds tuned by an N–H···π or C–H···π interaction: investigation of substituent,cooperativity and solvent effects

In the present work, ab-initio calculations are performed to investigate cooperativity effects between chalcogen bond and H···π interactions in XHY···NCH···C₆H₆ and XHY···CNH···C₆H₆ complexes, where X = F, Cl, Br, CN, NC, and Y = S, Se. The nature of these interactions and the mechanism of cooperativity are studied by means of quantum theory of atoms in molecules, noncovalent interaction index, many-body analysis of interaction energy and electron density shift analysis. For each ternary complex, the shortening of the Y···N(C) distance is more pronounced than that of the H···π. The cooperative energies of these complexes are all negative which demonstrate a positive cooperativity between the Y···N(C) and H···π interactions. The many-body analysis of interaction energy reveals that the two-body energy term has the largest contribution to the total interaction energies of ternary complexes. A good linear correlation is established between the three-body energy and cooperative energy values in the ternary systems. The cooperative energies of XHY···CNH···C₆H₆ complexes indicate a larger sensitivity on the polarity of solvent than XHY···NCH···C₆H₆ ones.     

Theoretical Studies on the Stabilities and Hydrogen Bond Actions of （H2O）n Clusters

1 INTRODUCTION In the latest ten years, the structure and function of water clusters have captured the interest of chemists. One of the most important study objects in water cluster is to describe the behavior of water so- lution quantitatively at molecule level, which will pave the way for the solving of some environmental and other scientific problems, such as the formation of acid rain and nucleation mechanism of little water drop. Besides, weak interaction in water clusters could be al…     

Selective and Cooperative Ligand Binding to Antiparallel Human Telomeric DNA G‐Quadruplexes

The quest for ligands that specifically bind to particular G‐quadruplex nucleic acid structures is particularly important to conceive molecules with specific effects on gene expression or telomere maintenance, or conceive structure‐specific molecular probes. Using electrospray mass spectrometry in native conditions, we reveal a highly cooperative and selective 2:1 binding of Cu^II‐tolylterpyridine complexes to human telomeric G‐quadruplexes. Circular dichroism and comparisons of affinities for different sequences reveal a marked preference for antiparallel structures with diagonal loops and/or wide‐medium–narrow‐medium groove‐width order. The cooperativity is attributed to conformational changes in the polymorphic telomeric G‐quadruplex sequences, which convert preferably into an antiparallel three‐quartet topology upon binding of two ligands.     

Quantitative parameters of cooperative interactions of oligonucleotides within tandem complexes

Quantitative parameters of cooperative interactions of deoxyribooligonucleotides within perfect complementary complexes with a nick in one strand and imperfect complexes containing one mismatched base pair in the nick were obtained. One complementary strand was represented by 22-mer oligonucleotides, while the other, by two short 8-mer oligonucleotides forming a tandem complex with the central part of the 22-mer. In the tandem complexes, the 8-mers form contacts of the following types: 5"-Py*pPy-3", 5"-Pu*pPy-3", and 5"-Pu*pPu-3", where p is phosphate, Py and Pu are pyrimidine and purine nucleosides, respectively, and * stands for a nick. In each incompletely complementary complex, the mismatched base pair in the nick is formed by the 3"-end nucleoside of the 8-mer oligonucleotide and by the nucleoside located in the middle of the 22-mer oligonucleotide. The alkylating 4-[N-(2-chloroethyl)-N-methylamino]phenyl}methylamino group (RCl) is linked through the 5"-end phosphate of the 8-mers (reagents) close to 3"-ends of the 22-mers. The dependences of the limit extents of alkylation of 22-mers (targets) at zero and saturating concentrations of the neighbor oligonucleotides (effectors) on the initial concentration of RCl-derivatives of oligonucleotides (reagents) were used to calculate the association constants K _X of the reagent with the target. The ratio of these constants was used to determine the parameters of contact cooperativity , which characterize the interactions at the junction of two oligonucleotides within the tandem complexes.     

A simple thermodynamic model for quantitatively addressing cooperativity in multicomponent self-assembly processes--Part 2: Extension to multimetallic helicates possessing different binding sites

The extended site-binding model, which explicitly separates intramolecular interactions (i.e., intermetallic and interligand) from the successive binding of metal ions to polytopic receptors, is used for unravelling the self-assembly of trimetallic double-stranded Cu(I) and triple-stranded Eu(III) helicates. A thorough analysis of the available stability constants systematically shows that negatively cooperative processes operate, in strong contrast with previous reports invoking either statistical behaviours or positive cooperativity. Our results also highlight the need for combining successive generations of complexes with common binding units, but with increasing metallic nuclearities, for rationalizing and programming multicomponent supramolecular assemblies.