Status of Drug Discovery Research Based on Marine Organisms from Eastern Indonesia

Despite the vastness of Eastern Indonesian Waters (EIW), no review has been done on the status of drug discovery research based on marine organisms from this area. The aim of this paper is to briefly discuss the challenges and perspectives on drug discovery research based on marine organisms in these indigenous waters. The emphasis is on the last 20 year period (1993 to 2013). Research activities completed during this period suggest that marine organisms from EIW could be utilized as an important natural resource for future drug discovery and development. However, lack of facilities, as well as competent human resources, significantly hinder progress on drug discovery research. More in-depth study especially on deep-sea natural products needs to be carried out to solidify the research on the potential for marine organisms from EIW to contribute to the future of drug discovery.     

Detection and characterization of recombinant DNA expressing <Emphasis Type="Italic">vip3A</Emphasis>-type insecticidal gene in GMOs—standard single,multiplex and construct-specific PCR assays

Vegetative insecticidal protein (Vip), a unique class of insecticidal protein, is now part of transgenic plants for conferring resistance against lepidopteron pests. In order to address the imminent regulatory need for detection and labeling of vip3A carrying genetically modified (GM) products, we have developed a standard single PCR and a multiplex PCR assay. As far as we are aware, this is the first report on PCR-based detection of a vip3A-type gene (vip-s) in transgenic cotton and tobacco. Our assay involves amplification of a 284-bp region of the vip-s gene. This assay can possibly detect as many as 20 natural wild-type isolates bearing a vip3A-like gene and two synthetic genes of vip3A in transgenic plants. The limit of detection as established by our assay for GM trait (vip-s) is 0.1%. Spiking with nontarget DNA originating from diverse plant sources had no inhibitory effect on vip-s detection. Since autoclaving of vip-s bearing GM leaf samples showed no deterioration/interference in detection efficacy, the assay seems to be suitable for processed food products as well. The vip-s amplicon identity was reconfirmed by restriction endonuclease assay. The primer set for vip-s was equally effective in a multiplex PCR assay format (duplex, triplex and quadruplex), used in conjunction with the primer sets for the npt-II selectable marker gene, Cauliflower mosaic virus 35S promoter and nopaline synthetase terminator, enabling concurrent detection of the transgene, regulatory sequences and marker gene. Further, the entire transgene construct was amplified using the forward primer of the promoter and the reverse primer of the terminator. The resultant amplicon served as a template for nested PCR to confirm the construct integrity. The method is suitable for screening any vip3A-carrying GM plant and food. The availability of a reliable PCR assay method prior to commercial release of vip3A-based transgenic crops and food would facilitate rapid and efficient regulatory compliance. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. An application for an Indian patent (1891/DEL2006/17.08.07) comprising a substantive part of this study has been filed. ITRC communication no. 2516.     

Chemistry and the worm: Caenorhabditis elegans as a platform for integrating chemical and biological research

This Review discusses the potential usefulness of the worm Caenorhabditis elegans as a model organism for chemists interested in studying living systems. C. elegans, a 1 mm long roundworm, is a popular model organism in almost all areas of modern biology. The worm has several features that make it attractive for biology: it is small (<1000 cells), transparent, and genetically tractable. Despite its simplicity, the worm exhibits complex phenotypes associated with multicellularity: the worm has differentiated cells and organs, it ages and has a well-defined lifespan, and it is capable of learning and remembering. This Review argues that the balance between simplicity and complexity in the worm will make it a useful tool in determining the relationship between molecular-scale phenomena and organism-level phenomena, such as aging, behavior, cognition, and disease. Following an introduction to worm biology, the Review provides examples of current research with C. elegans that is chemically relevant. It also describes tools-biological, chemical, and physical-that are available to researchers studying the worm.     

Self-organized patterns and traffic flow in Colonies of organisms: from bacteria and social insects to vertebrates

Flocks of birds and schools of fish are familiar examples of spatial patterns formed by living organisms. In contrast to the patterns on the skins of, say, zebras and giraffes, the patterns of our interest are transient although different patterns change over different timescales. The aesthetic beauty of these patterns has attracted the attention of poets and philosophers for centuries. Scientists from various disciplines, however, are in search of common underlying principles that give rise to the transient patterns in colonies of organisms. Such patterns are observed not only in colonies of organisms as simple as single-cell bacteria, but also in social insects like ants and termites. They are also observed in colonies of vertebrates as complex as birds and fish, and in human societies. In recent years, physicists have utilized the framework of statistical physics to understand these patterns. In this article, we present an overview emphasizing the common trends that rely on theoretical modeling of these systems using the so-called agent-based Lagrangian approach.     

水性防污涂料的研究进展

海洋污损生物是海洋资源开发首先要面对的问题。防污涂料是防除海洋污损生物的关键材料。传统的防污涂料虽然发展成熟,但以油性溶剂为介质,存在挥发性有机物(VOC)排放过高、环境污染严重的问题。不释放VOC的水性涂料符合绿色无污染的环保要求,是防污材料领域研究的热点。本文对最重要的四种水性防污涂料(污损释放型水性低表面能防污涂料、自抛光型水性防污涂料、污损阻抗型水凝胶海洋防污涂料、强碱释放型水性硅酸盐防污涂料)从防污机理、制备方法和存在的问题等几个方面进行了综述,并对水性防污涂料的发展趋势进行了展望。     

Evaluation of mosquito larvicidal activity of fruit extracts of Acacia auriculiformis against the Japanese encephalitis vector Culex vishnui

The larvicidal potentiality of crude and ethyl acetate extracts of fruits of Acacia auriculiformis was investigated against all the larval instars of JE vector Culex vishnui. The crude extracts showed good results against all the larval instars with highest mortality at 0.09%. Highest mortality was found at 300 ppm of ethyl acetate extract. Lowest LC₅₀ value was obtained at 72 h for third instar larvae. Non target organisms tested, showed no to very less mortality to ethyl acetate solvent extract. Presence of N–H stretching, a C=O stretching, C=C and C–N stretching vibrations of secondary amide or amine group were confirmed from IR analysis. GC-MS analysis revealed the presence of three compounds namely Ethane 2-chloro-1,1-dimethoxy, Acetic acid, 1-methyl ether ester and [4-[1-[3,5-Dimethyl-4[(trimethylsilyl)oxy)phenyl]-1,3-dimethylbutyl)-2,6dimethylphenoxy)(trimethyl) silane, responsible for mosquito larval death.     

Antibacterial activity of a new class of tris homoleptic Ru (II)-complexes with alkyl-tetrazoles as diimine-type ligands

Herein, we describe a new family of tris chelate homoleptic Ru (II) complexes, [Ru(N^N) ₃ ] ²⁺ , where the role of the diimine-type ligands (N^N) was fulfilled by 2-pyridyl (PTZ) or 2-quinolyl tetrazole (QTZ) derivatives decorated with various alkyl substituents at the N-2 position of the tetrazole ring. The new Ru (II) complexes with general formula [Ru (PTZ-R) ₃ ] ²⁺ and [Ru (QTZ-R) ₃ ] ²⁺ , were obtained as mixtures of facial (fac) and meridional (mer) isomers, as suggested by NMR (¹H, ¹³C) experiments, and confirmed in the case of mer-[Ru (QTZ-Me) ₃ ] ²⁺ , by X-ray crystallography. The photophysical behavior of the tetrazole-based [Ru(N^N) ₃ ] ²⁺ type species was investigated by UV–vis absorption spectroscopy, providing trends typical of polypyridyl Ru (II) complexes. The new homoleptic complexes fac/mer- [Ru (PTZ-R) ₃ ] ²⁺ and fac/mer- [Ru (QTZ-R) ₃ ] ²⁺ have been assessed for any eventual antimicrobial activity towards two different bacteria such as Gram-negative Escherichia coli and Gram-positive Deinococcus radiodurans. Whereas being inactive toward E. coli, the response of agar disks diffusion tests suggested that some of the new fac/mer Ru (II) complexes could inhibit the growth of D. radiodurans. This effect was further investigated by determining the growth kinetics in liquid medium of D. radiodurans exposed to the fac/mer- [Ru (PTZ-R) ₃ ] ²⁺ and fac/mer- [Ru (QTZ-R) ₃ ] ²⁺ complexes at different concentrations. The outcome of these experiments highlighted that the turn-on of the growth inhibitory effect took place as the linear hexyl chain was appended to the PTZ or QTZ scaffold, suggesting also how the inhibitory activity appeared more pronouncedly exerted by the facial isomers fac- [Ru (PTZ-Hex) ₃ ] ²⁺ and fac- [Ru (QTZ-Hex) ₃ ] ²⁺ (MIC = ca. 3.0 μg/ml) with respect to the corresponding meridional isomers (MIC = ca. 6.0 μg/ml).     

Energy production in anaerobic organisms

Biological redox processes are required for the synthesis of “energy-rich” compounds which are in an enzyme-controlled equilibrium with the general energy carrier adenosine triphosphate (ATP). The basic mechanisms of biological energy transformation are substrate level (SLP) and electron transport phosphorylations (ETP). In anaerobic catabolism the numerous nutrients are channelled into only a few substrate level phosphorylations; the occurrence in chemotrophic anaerobes of energy conservation coupled to electron transport has not yet been demonstrated unequivocally. At present, the determination of the ATP turnover (Y_ATP) in growing cells appears to be a promising method of approaching this problem. The existing knowledge of oxygen dependent enzyme reactions and their molecular evolution provides the basis for a biochemical definition of aerobic and anaerobic organisms.     

On-line pre-concentration and UV determination of DNA fragments by dynamic coating capillary electrophoresis and its application to detection of genetically modified oilseed rape based on PCR

In this work, it was demonstrated that on-line pre-concentration and separation of DNA fragments within bared silica column by dynamic coating capillary electrophoresis and UV detection. The DNA fragments were pre-concentrated with long electrokinetic injecting time (99 s), peak height increased dramatically as a function of injection time, especially for shorter length DNA. The concentration sensitivity of DNA fragments can be improved from 20- to 100-fold relative to a normal injection (5 s). The electro-osmotic flow (EOF) and DNA-wall interactions within the capillary were eliminated effectively by dynamic coating method. Employing 0.5% poly(ethylene oxide) (PEO) in Tris-phosphate-EDTA (TBE) buffer as sieving matrix, DNA fragments, ranging from 11 to 657 bp, were separated within 20 min. The linear coefficient of linear relation between the migration and DNA length is 0.999. The DNA fragments amplified from transgenic oilseed rape by polymerase chain reaction (PCR) were separated and detected by this method, demonstrating the potential use of this method for effective DNA analysis and detection of genetically modified organisms (GMO).