Some solvable models of nonuniform classical fluids

A model classical fluid is constructed by assuming that the direct correlation functionc(r – r) is independent of any applied external field. Thermodynamic consistency requires thatc(r – r) 0, and permits explicit representation of the model by a many-body interaction potential. In the canonical ensemble, the model shows a phase transition to an infinite density condensed phase, but in the grand canonical ensemble only an anomalous transition to zero density vapor is found to stably exist.     

密度泛函理论在分子磁学中的应用

通过对桥联双核铁的磁耦合常数的计算，探讨了密度泛函理论计算条件对计算 结果的影响。基于密度泛函理论下的破损态方法，着重讨论了双核 Fe(III)_2的 d~5-d~5电子通过氧桥的超交换作用。研究发现分子的反铁磁通道主要是Fe(III) d_yz和d_z~2与μ-O的p轨道形成的，具有π*/π*和σ*/σ*特征的超交换通道。     

3-羟基哒嗪及其CH3, NO2和Cl取代衍生物质子转移过程的理论研究

用密度泛函理论(DFT) B3LYP方法, 在6-311＋G*基组下, 对3-羟基哒嗪及其CH₃, NO₂和Cl取代衍生物分子醇式和酮式结构互变异构化反应进行了研究, 优化化合物的几何构型, 寻找反应的过渡态, 通过振动分析和内禀反应坐标(IRC)分析加以证实, 计算了反应的活化能. 结果表明, 3(2H)-哒嗪酮及其带取代基的衍生物不论是单体, 还是相对应的二聚体, 比其相对应的异构体能量低, 表明在通常情况下是以3(2H)-哒嗪酮及其衍生物形式稳定存在的, 这与前人通过实验数据对3-羟基哒嗪互变异构体的比率进行预测的结果是一致的. 根据计算结果讨论了异构化反应的机理.     

Comparative studies of static dipole polarizabilities of ionic crystals on the basis of different self-consistent potentials

The static dipole polarizabilities, ^D , have been studied for the ions O^2–, F^–, Na⁺, Mg²⁺, Cl^–, K⁺ and Ca²⁺ in the crystals NaF, KF, NaCl, KC1, MgO and CaO. The starting zero-order wave functions have been generated using various exchange- and exchange-correlation potentials in order to study the effect of these potentials on ^D . The direct contribution to the dipole polarizability, _o ^D , has been determined by the uncoupled Hartree-Fock method. Self-consistency effects have been included by the geometric approximation. The crystal potential is incorporated using the Watson sphere model. Good agreement between theoretical and experimental results are found for those self-consistent potentials which exclude self-interaction.     

π-Bindungsbeitrag in Boranen, 2. Mitt.:Ab initio- und Kraftfeld-Rechnungen von Vinyldifluorboran

Ab initio calculations on vinyldifluoroborane yield a -contribution of 23 kJ/mol (5.5 kcal/mol) mainly due to the C=C bond and not to the lone pairs of the fluorine atoms. The rotational barrier was also determined. The force field calculations favour the interpretation of the bond structure derived from the theab initio results.

     

Parameterization of peptide 13C carbonyl chemical shielding anisotropy in molecular dynamics simulations.

NMR chemical shielding anisotropy (CSA) relaxation is an important tool in the study of dynamical processes in proteins and nucleic acids in solution. Herein, we investigate how dynamical variations in local geometry affect the chemical shielding anisotropy relaxation of the carbonyl carbon nucleus, using the following protocol: 1) Using density functional theory, the carbonyl (13)C' CSA is computed for 103 conformations of the model peptide group N-methylacetamide (NMA). 2) The variations in computed (13)C' CSA parameters are fitted against quadratic hypersurfaces containing cross terms between the variables. 3) The predictive quality of the CSA hypersurfaces is validated by comparing the predicted and de novo calculated (13)C' CSAs for 20 molecular dynamics snapshots. 4) The CSA fluctuations and their autocorrelation and cross correlation functions due to bond-length and bond-angle distortions are predicted for a chemistry Harvard molecular mechanics (CHARMM) molecular dynamics trajectory of Ca(2+)-saturated calmodulin and GB3 from the hypersurfaces, as well as for a molecular dynamics (MD) simulation of an NMA trimer using a quantum mechanically correct forcefield. We find that the fluctuations can be represented by a 0.93 scaling factor of the CSA tensor for both R(1) and R(2) relaxations for residues in helix, coil, and sheet alike. This result is important, as it establishes that (13)C' relaxation is a valid tool for measurement of interesting dynamical events in proteins.     

On Mercury(I) Oxo Compounds — Quasi‐Relativistic Computational and Experimental Studies

About 60 molecular species composed of up to 10 mercury atoms and of oxygen atoms and/or of some other elements or groups (such as halogen, OH₂, OH, H, alkali, NO₃) have been investigated quantum chemically. Different density functional approaches and the ab initio SCF‐MP2 method were applied, comparing different basis sets and different atomic core sizes. It is important not to treat the Hg 5s, p, d as inactive core shells, and to use sufficiently many polarization functions. The shape of the 〉O‐Hg‐Hg‐O〈 units is not favorable concerning the formation of lattices composed of Hg^I, O and OH only. Despite its bulkiness, the OHgHgO units can easily come into contact with each other and then disproportionate. This is prevented in the so‐called ternary M‐Hg^I oxides by the embedded oxometallate (oxoacidic) anions. Furthermore, the Hg^I and Hg^II oxide bond energies are less favorable towards the stability of Hg^I oxo compounds, as compared to Hg halidic or oxoacidic compounds. Both points are not promising concerning the search for Hg^I oxides/hydroxides, although the preparation of such compounds, including spacer groups, by topochemical reactions can still not be excluded. So far, experimental efforts towards the synthesis of such a new class of compounds have only demonstrated that Hg^II is strictly preferred over Hg^I in the formation of solids of binary Hg‐O or ternary A‐Hg‐O composition (A = electropositive metal such as alkali, in contrast to M = transition or semi‐metal). This is so even if compounds containing ‘electron rich Hg^δ— atoms’ (i.e. A‐Hg amalgams) are oxidized under mild conditions.     

Probing the hydride transfer process in the lumiflavine-1-methylnicotinamide model system using group softness

The hydride transfer process between the isoalloxazine moiety of flavins and the nicotinamide moiety of NAD(P)H has been explored by using density functional theory based reactivity index in the 1-methylnicotinamide-lumiflavine model system. Based on crystallographic data available, we have found that the group softness index helps to locate and orientate reactive regions in these interacting molecules while the electrophilicity index successfully describes the reactivity pattern of this system.     

Silica-Based and Transition Metal-Based Inorganic-Organic Hybrid Materials—A Comparison

Organically substituted metal alkoxides can be prepared by reaction of the parent alkoxides with complexing organic compounds. The chemical and structural consequences of such substitutions are discussed in this article. Examples are given showing how functional organic moieties, such as polymerizable groups, can be incorporated into sol-gel materials via the complexing ligands. Major structural differences between silica-based and metal-based hybrid materials originate from the different charge/coordination number ratios of silicon and most metals. This results in a high tendency for the molecular building blocks to aggregate. In many cases, metal oxide clusters are formed which are capped by the organic ligands. Such surface-modified clusters are themselves very valuable condensed matter units for materials syntheses.     

The Conductance- and Capacitance-Frequency Characteristics of the Rectifying Junctions Formed by Sublimation of Organic Pyronine-B on p-Type Silicon

The rectifying junction characteristics of the organic compound pyronine-B film on a p-type Si substrate has been studied. The pyronine-B has been sublimed on the top of p-Si surface. The barrier height and ideality factor values of 0.79±0.04 and 1.13±0.06 eV for this structure have been obtained from the forward bias current-voltage (I-V) characteristics. From the low capacitance-frequency (C-f) characteristics as well as conductance-frequency (G-f) characteristics, the energy distribution of the interface states and their relaxation time have been determined in the energy range of (0.53−E_v)-(0.79−E_v) eV taking into account the forward bias I-V data. The interface state density N_ss ranges from 4.93×10¹⁰ cm⁻² eV⁻¹ in (0.79−E_v) eV to 3.67×10¹³ cm⁻² eV⁻¹ in (0.53−E_v) eV. Furthermore, the relaxation ranges from 3.80×10⁻³ s in (0.53−E_v) eV to 4.21×10⁻⁴ s in (0.79−E_v) eV. It has been seen that the interface state density has an exponential rise with bias from the midgap towards the top of the valence band. The relaxation time shows a slow exponential rise with bias from the top of the valence band towards the midgap.