Valence state parameters of all transition metal atoms in metalloproteins—development of ABEEMσπ fluctuating charge force field

To promote accuracy of the atom‐bond electronegativity equalization method (ABEEMσπ) fluctuating charge polarizable force fields, and extend it to include all transition metal atoms, a new parameter, the reference charge is set up in the expression of the total energy potential function. We select over 700 model molecules most of which model metalloprotein molecules that come from Protein Data Bank. We set reference charges for different apparent valence states of transition metals and calibrate the parameters of reference charges, valence state electronegativities, and valence state hardnesses for ABEEMσπ through linear regression and least square method. These parameters can be used to calculate charge distributions of metalloproteins containing transition metal atoms (Sc‐Zn, Y‐Cd, and Lu‐Hg). Compared the results of ABEEMσπ charge distributions with those obtained by ab initio method, the quite good linear correlations of the two kinds of charge distributions are shown. The reason why the STO‐3G basis set in Mulliken population analysis for the parameter calibration is specially explained in detail. Furthermore, ABEEMσπ method can also quickly and quite accurately calculate dipole moments of molecules. Molecular dynamics optimizations of five metalloproteins as the examples show that their structures obtained by ABEEMσπ fluctuating charge polarizable force field are very close to the structures optimized by the ab initio MP2/6–311G method. This means that the ABEEMσπ/MM can now be applied to molecular dynamics simulations of systems that contain metalloproteins with good accuracy. © 2014 Wiley Periodicals, Inc.     

Design of a reaction field using a linear‐combination‐based isotropic periodic sum method

In our previous study (Takahashi et al., J. Chem. Theory Comput. 2012, 8, 4503), we developed the linear‐combination‐based isotropic periodic sum (LIPS) method. The LIPS method is based on the extended isotropic periodic sum theory that produces a ubiquitous interaction potential function to estimate homogeneous and heterogeneous systems. The LIPS theory also provides the procedure to design a periodic reaction field. To demonstrate this, in the present work, a novel reaction field of the LIPS method was developed. The novel reaction field was labeled LIPS‐SW, because it provides an interaction potential function with a shape that resembles that of the switch function method. To evaluate the ability of the LIPS‐SW method to describe in homogeneous and heterogeneous systems, we carried out molecular dynamics (MD) simulations of bulk water and water–vapor interfacial systems using the LIPS‐SW method. The results of these simulations show that the LIPS‐SW method gives higher accuracy than the conventional interaction potential function of the LIPS method. The accuracy of simulating water–vapor interfacial systems was greatly improved, while that of bulk water systems was maintained using the LIPS‐SW method. We conclude that the LIPS‐SW method shows great potential for high‐accuracy, high‐performance computing to allow large scale MD simulations. © 2014 Wiley Periodicals, Inc.     

Acceleration of self‐consistent field convergence in ab initio molecular dynamics simulation with multiconfigurational wave function

The Lagrange interpolation of molecular orbital (LIMO) method, which reduces the number of self‐consistent field iterations in ab initio molecular dynamics simulations with the Hartree–Fock method and the Kohn–Sham density functional theories, is extended to the theory of multiconfigurational wave functions. We examine two types of treatments for the active orbitals that are partially occupied. The first treatment, as denoted by LIMO(C), is a simple application of the conventional LIMO method to the union of the inactive core and the active orbitals. The second, as denoted by LIMO(S), separately treats the inactive core and the active orbitals. Numerical tests to compare the two treatments clarify that LIMO(S) is superior to LIMO(C). Further applications of LIMO(S) to various systems demonstrate its effectiveness and robustness. © 2014 Wiley Periodicals, Inc.     

Effects of Magnetic Nanofluid Fuel Combustion on the Performance and Emission Characteristics

Although the compression ignition engines are a significant source of power, their detrimental emissions create considerable problems to the environment as well as to humans. The objective of the present experimental investigation is to examine the effects of the magnetic nanofluid fuels on combustion performance characteristics and exhaust emissions. In this regard, the Fe₃O₄ nanoparticles dispersed in the diesel fuel with the nanoparticle concentrations of 0.4 and 0.8 vol% were employed for combustion in a single-cylinder, direct-injection diesel engine. After a series of experiments, it was demonstrated that the nanoparticle additives, even at very low concentrations, have considerable influence in diesel engine characteristics. Furthermore, the results indicated that the nanofluid fuel with nanoparticle concentration of 0.4 vol% shows better combustion characteristics in comparison with that of 0.8 vol%. Based on the experimental results, NO _x and SO₂ emissions dramatically reduce, while CO emissions and smoke opacity noticeably increase with increasing the dosing level of nanoparticles.     

聚四氟乙烯和石墨对聚醚酰亚胺摩擦学性能的影响

将聚四氟乙烯(PTFE)和石墨两类减摩耐磨填料填充到聚醚酰亚胺(PEI)中,表征其摩擦性能,利用扫描电子显微镜分析了磨损表面的显微结构,并分析了磨损机制.研究结果表明,PTFE和石墨的填充明显改善了PEI的摩擦磨损性,摩擦系数降低到0.3以下(纯PEI的摩擦系数为0.41),磨损率降低了3个数量级.在PTFE体系中,PTFE质量分数为10%时,PEI基共混材料的摩擦系数最低为0.23;而在质量分数为15%的石墨体系中,PEI基共混材料摩擦系数最低为0.27.磨损率随着填料含量的增加而逐渐下降,在填料质量分数为20%之后,摩损率下降平缓.因此PTFE和石墨的填充对PEI的摩擦学性能起到了很好的改善作用,而且PTFE比石墨的改善效果更优益.共混物的机械性能测试结果表明,在填料质量分数为5%~15%时,共混物具有良好的机械性能.     

含硼杂原子Na-B-ZSM-5分子筛对甲醇脱氢制甲醛反应的催化性能

以白炭黑为硅源、硼酸为硼源、NaOH为碱源、四丙基溴化铵(TPABr)和1,6-己二胺(HMDA)混合模板剂,采用水热合成法制备含硼杂原子Na-B-ZSM-5分子筛,用XRD、SEM、FT-IR、UV-vis、11B MAS NMR、NH3-TPD等方法对其进行表征。在连续流动常压固定床反应器上评价Na-B-ZSM-5分子筛对甲醇脱氢制甲醛反应的催化性能,考察n(Si)/n(B)、n(Na2O)/n(SiO2)、晶化温度和晶化时间等制备参数以及反应温度和质量空速等工艺参数对催化性能的影响。结果表明,硼进入了分子筛的骨架结构中,存在与B酸中心有关的骨架四配位硼和与L酸中心有关的骨架三配位硼,Na-B-ZSM-5分子筛含有较多的弱酸位和少量的中强酸位。催化剂的最佳制备参数为n(Si)/n(B)比值为7.5、n(Na2O)/n(SiO2)比值为0.14、晶化温度170℃、晶化时间48 h。Na-B-ZSM-5(7.5)分子筛在反应温度550℃、质量空速1.85 h-1的反应条件下对甲醇的转化率为62.97%,甲醛的选择性为68.86%。     

Determination of four sulfonylurea herbicides in tea by matrix solid‐phase dispersion cleanup followed by dispersive liquid–liquid microextraction

Matrix solid‐phase dispersion combined with dispersive liquid–liquid microextraction has been developed as a new sample pretreatment method for the determination of four sulfonylurea herbicides (chlorsulfuron, bensulfuron‐methyl, chlorimuron‐ethyl, and pyrazosulfuron) in tea by high‐performance liquid chromatography with diode array detection. The extraction and cleanup by matrix solid‐phase dispersion was carried out by using CN‐silica as dispersant and carbon nanotubes as cleanup sorbent eluted with acidified dichloromethane. The eluent of matrix solid‐phase dispersion was evaporated and redissolved in 0.5 mL methanol, and used as the dispersive solvent of the following dispersive liquid–liquid microextraction procedure for further purification and enrichment of the target analytes before high‐performance liquid chromatography analysis. Under the optimum conditions, the method yielded a linear calibration curve in the concentration range from 5.0 to 10 000 ng/g for target analytes with a correlation coefficients (r²) ranging from 0.9959 to 0.9998. The limits of detection for the analytes were in the range of 1.31–2.81 ng/g. Recoveries of the four sulfonylurea herbicides at two fortification levels were between 72.8 and 110.6% with relative standard deviations lower than 6.95%. The method was successfully applied to the analysis of four sulfonylurea herbicides in several tea samples.     

Simultaneous determination of seven phthalic acid esters in beverages using ultrasound and vortex‐assisted dispersive liquid–liquid microextraction followed by high‐performance liquid chromatography

A sensitive, rapid, and simple high‐performance liquid chromatography with UV detection method was developed for the simultaneous determination of seven phthalic acid esters (dimethyl phthalate, dipropyl phthalate, di‐n‐butyl phthalate, benzyl butyl phthalate, dicyclohexyl phthalate, di‐(2‐ethylhexyl) phthalate, and di‐n‐octyl phthalate) in several kinds of beverage samples. Ultrasound and vortex‐assisted dispersive liquid–liquid microextraction method was used. The separation was performed using an Intersil ODS‐3 column (C₁₈, 250 × 4.6 mm, 5.0 μm) and a gradient elution with a mobile phase consisting of MeOH/ACN (50:50) and 0.2 M KH₂PO₄ buffer. Analytes were detected by a UV detector at 230 nm. The developed method was validated in terms of linearity, limit of detection, limit of quantification, repeatability, accuracy, and recovery. Calibration equations and correlation coefficients (> 0.99) were calculated by least squares method with weighting factor. The limit of detection and quantification were in the range of 0.019–0.208 and 0.072–0.483 μg/L. The repeatability and intermediate precision were determined in terms of relative standard deviation to be within 0.03–3.93 and 0.02–4.74%, respectively. The accuracy was found to be in the range of –14.55 to 15.57% in terms of relative error. Seventeen different beverage samples in plastic bottles were successfully analyzed, and ten of them were found to be contaminated by different phthalic acid esters.     

Comparison of different types of outlet frits in slurry‐packed capillary columns

Fused‐silica capillary columns for high‐performance liquid chromatography with 320 and 250 μm inner diameter were prepared by slurry packing with 5 and 3 μm Nucleosil C₁₈ stationary phase. Different types of mechanical and monolithic outlet frits were used and their influence on the resulting column performance was evaluated. Columns with quartz wool exhibited symmetrical peaks and low theoretical plate height, and the preparation time was short. The performance of monolithic frits varied based on type of monolith, length of the frit, and silanization procedure. The best frit performed similarly to the quartz wool ones, but the preparation took several hours. Their main advantage lies in the possibility of on‐column detection, because the detection window can be burnt immediately behind the frit.