S1←S0 Vibronic spectra and the structure of acetyl fluoride-h3 and acetyl fluoride-d3 molecules

UV absorption spectra of acetyl fluoride-h₃ and -d₃ (CH₃COF and CD₃COF) molecules in the region of S₁S₀ electronic transitions are investigated. The origins (0⁰ ₀ or 14^0± ₀) of these transitions are observed at 39912 and 39904 cm^–1, respectively, and some of the fundamental frequencies of these molecules in the s₀ and S₁ states are determined. In particular, the systems of torsion and inversion (out-of-plane C=O vibrations) energy levels are studied. The geometric parameters of an acetyl fluoride-h₃ molecule in the S₁ state are estimated by the theoretical simulation of the rotational contours of the 0⁰ ₀ (14^0± ₀) band. These data are used to evaluate the potential barriers to internal rotation in the S₀ and S₁ states, which were found to be 360 and 560 cm^–1 for acetyl fluoride-h₃ and 380 and 770 cm^–1 for acetyl fluoride-d₃, respectively, as well as the potential barriers to inversion in the S₁ states, which were found to be 2090 and 2370 cm^–1 for acetyl fluoride-h₃ and acetyl fluoride-d₃, respectively.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 11, pp. 1957–1964, November, 1994.In conclusion, the authors would like to acknowledge T. S. Kuznetsova for the synthesis and purification of the AF samples.The research presented here was supported in part by the International Science Foundation under grant No. MJ 1000.     

Protein fold recognition

Summary An important, yet seemingly unattainable, goal in structural molecular biology is to be able to predict the native three-dimensional structure of a protein entirely from its amino acid sequence. Prediction methods based on rigorous energy calculations have not yet been successful, and best results have been obtained from homology modelling and statistical secondary structure prediction. Homology modelling is limited to cases where significant sequence similarity is shared between a protein of known structure and the unknown. Secondary structure prediction methods are not only unreliable, but also do not offer any obvious route to the full tertiary structure. Recently, methods have been developed whereby entire protein folds are recognized from sequence, even where little or no sequence similarity is shared between the proteins under consideration. In this paper we review the current methods, including our own, and in particular offer a historical background to their development. In addition, we also discuss the future of these methods and outline the developments under investigation in our laboratory.     

Dansyl-Modified γ-Cyclodextrin as a fluorescent sensor for molecular recognition

The crystal structure of thiamine iodide sesquihydrate has been determined by X-ray diffraction methods as a host-guest model for coenzyme-substrate interactions. The asymmetric unit contains two chemical units. Both the thiamine molecules A and B, which are crystallographically independent, assume the usualF conformation and have a disordered hydroxyethyl side chain. An iodide anion (or a water molecule) bridges the pyrimidine and thiazolium rings of molecule A (or B) by forming a hydrogen bond with the amino group and an electrostatic contact with the thiazolium ring to stabilize the molecular conformation. In the crystal the thiamine molecules self-associate to form a pipe-like polymeric structure, in which four thiamine hosts surround an iodide guest and hold it through C(2)-H...I hydrogen bonds and thiazolium...I electrostatic interactions. Crystal data: C₁₂H₁₇N₄OS⁺·I^– · 1.5 H₂O, monoclinic,P2₁/c, a=12.585(2), b=25.303(5), c=12.030(2) Å, =115.15(1)°,V=3468(1) ų,Z=8,D _c=1.606 g cm^–3,R=0.045 for 3328 observed reflections. Supplementary Data relating to this article are deposited with the British Library as Supplementary Publication No. SUP. 82156 (13 pages).     

Synthesis, crystal structure and thermoelectric properties of a new carbide Zr2[Al3.56Si0.44]C5

A new quaternary layered carbide, Zr₂[Al_3.56Si_0.44]C₅, has been synthesized and characterized by X-ray powder diffraction, transmission electron microscopy and thermopower and electrical conductivity measurements. The crystal structure was successfully determined using direct methods, and further refined by the Rietveld method. The crystal is trigonal (space group R3m, Z=3) with lattice dimensions of a=0.331059(5), c=4.09450(5) nm and V=0.38864(1) nm³. The final reliability indices calculated from the Rietveld refinement were R_wp=6.24%, R_p=4.21% and R_B=0.82%. The crystal structure is composed of electroconductive NaCl-type ZrC slabs separated by Al₄C₃-type [Al_3.56Si_0.44]C₃ layers. This material had thermoelectric properties superior to those of the ternary layered carbides Zr₂Al₃C₄ and Zr₃Al₃C₅, with the power factor reaching 7.6×10⁻⁵W m⁻¹ K⁻².     

Synthesis and Crystal Structure of 3-（Trichloroacetyl） Indole

1 INTRODUCTION Indole and its derivatives have attracted much at-tention due to their chemical properties as well asbiological activities[1, . They have been widely used 2]as the materials for producing pigment, perfume,plant growth regulators, etc. Recently, it has alsobeen found that some indole derivatives present anti-tumor and antiviral activities[3～5]. During our sear-ches for bioactive compounds, a series of indole deri-vatives were synthesized, among …     

Structure inhomogeneities of medium-range order in fluorozirconate glasses

Images of cleaved surfaces were obtained for 53ZrF₄-20BaF₂-4LaF₃-3AlF₃-20NaF (ZBLAN) glasses and fused quartz using an NTMDT atomic force microscope. It is shown that the scatter of particle size depends on the cooling rate and is 21–48.5 Å for the cleaved surface of ZBLAN glass obtained by very fast cooling and 68–172 Å for the cleaved surface of ZBLAN after slow cooling. For cleaved fused quartz, the range is 25-18 Å.     

Monodisperse chloromethyl-functionalized macroporous polymer particles by seeded polymerization in aqueous media

This study presents a method to produce monodisperse chloromethyl-functionalized macroporous poly(styrene-co-divinylbenzene) polymer particles by seeded polymerization in aqueous media. We observed that the molecular structure of polystyrene seed particles, the composition of the secondary monomer mixtures, and the type of solvents were very important factors that determine the morphology and porosity of the final particles. This study proposes that the molecular chemistry of polystyrene seed polymers, increasing molecular weight or crosslinking, is another factor that can control the porosity of the final particles. Also, the selection of a poor solvent was effective in forming the larger surface area. In this study, it was confirmed that the chloromethyl groups introduced on the surface of porous particles were quantified chemically and their effective incorporation had a close relationship with the surface area.     

A Theoretical Study on the Conductivity of Carbon Doped BNNT

From the changes in energy band, density of state (DOS) and electronic structure calculated by the DFT/B3LYP method, the conductivity of carbon doped boron‐nitride nanotube (BNNT), which is formed by C‐C bond substituting B‐N bond, was discussed. The results indicate that the substitution will strengthen the conductivity of the tube, and its semi‐conductivity might be adjusted by controlling the substitution.     

Theoretical study of reaction channels for the weakly bound complex systems created with HF,CO2, and various amines

This investigation conducted reaction channels of weakly bound complexes CO₂…HF, CO₂…HF…NH₃, CO₂…HF…NH₂CH₃, CO₂…HF…NH(CH₃)₂, and CO₂…HF…N(CH₃)₃ systems, using the Gaussian 98 package at the B3LYP/6‐311++G(3df,2pd) level. The syn‐fluoroformic acid or syn‐fluoroformic acid plus NH₃ or amine conformers are more stable than the related anti‐fluoroformic acid or anti‐fluoroformic acid plus NH₃ or amine conformers. However, the above‐mentioned weakly bound complexes are more stable than both the related syn‐ and anti‐type fluoroformic acid or acid plus NH₃ or amine conformers and their related decomposed into CO₂ + HF or CO₂ + NHR₃F (R?H, CH₃) combined molecular systems. Five reaction channels of the weakly bound complexes exist. Each channel includes weakly bound complexes and their related above‐mentioned systems. Moreover, each reaction channel contains two transition states. The transition state between the weakly bound complex and anti‐fluoroformic acid type structure (T₁₃) is significantly higher than that of internal rotation (T₂₃) between syn‐ and anti‐FCO₂H (or FCO₂H…NR₃) structures. However, the above‐mentioned T₁₃ can significantly decrease its energy by adding the third molecule NH₃ or NR₃ (R?H or CH₃). The more CH₃ that is substituted in NR₃ of the reaction channel, the lower the activation energy of the transition state in the system is affected. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

双亲性三嵌段共聚物/水体系超分子结构的研究

利用小角 X-射线散射技术研完了双亲性聚氧化乙烯-聚二甲基硅氧烷-聚氧化乙烯三嵌段共聚物/水体系在高浓度的溶致性液晶相,测定了亲水区、疏水区随浓度和结构变化的尺寸等超分子结构参数。用简单的几何模型可满意地解释实验结果。