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51.
Pierre Thuéry Nelly Keller Monique Lance Julien-Daniel Vigner Martine Nierlich 《Journal of inclusion phenomena and macrocyclic chemistry》1994,20(1):89-96
The doubly deprotonated form of calix[6]arene, with two protonated triethylamines as counter-ions, crystallizes in the monoclinic system: space groupP21/n,a=8.465(4),b=17.822(8),c=15.182(6) Å,=90.18(4)°,V=2291(2) Å3,Z=2. Refinement led to a final conventionalR value of 0.063 for 1046 reflections. The macrocycle conformation is not apinched cone, usual for freeR-calix[6]arene, but a distorted 1,2,3-alternate cone, since the molecule lies on a symmetry center. Furthermore, one of the torsion angles defined by the methylene bridges is near to zero, which is unusual in calixarene structures.
Supplementary Data relating to this article (atomic coordinates for hydrogen atoms, anisotropic displacement parameters for oxygen and nitrogen atoms, and observed and calculated structure factors) are deposited with the British Library as Supplementary Publication No. SUP 82182 (7 pages). 相似文献
52.
Tyson L ChasseJoshua C Yohannan Namjin KimQun Li Zemin LiChristopher B Gorman 《Tetrahedron》2003,59(22):3853-3861
Examples of new dendrimers are presented. In the first, the effect on electron transfer rate attenuation is investigated for two dendrimer isomers that differ only in the linkage (ortho- versus meta-linked) of the phenyl ether units within one generation of the structure. Second, the effect of encapsulation on electrochemical and luminescence behavior of a new type of rhenium selenide cluster core dendrimer is illustrated. 相似文献
53.
Enduracidin and ramoplanin belong to the large family of cyclodepsipeptide antibiotics, highly effective against Gram-positive bacteria. The primary and 3D solution structure of ramoplanin is already well known, and the primary structure of enduracidin has been determined by a combination of chemical and NMR spectroscopic methods. Both antibiotics share a similar peptide core of 17 amino acids and differ mainly in the length of the acyl chain and the presence of two D-mannose moieties in ramoplanin. Based on the high sequence homology with ramoplanin, the structure in solution of enduracidin is modeled as a cyclic peptide. The tertiary structure thus obtained was refined through molecular dynamics (MD) simulation, in which the interatomic NOE-derived distance restraints were imposed. MD simulations yielded a family of representative 3D structures (RMSD = 0.89), which highlighted a backbone geometry similar to that of ramoplanin in its beta-hairpin arrangement. In contrast, enduracidin displays a different arrangement of the side-chain and of the residues forming the hydrophobic core. 相似文献
54.
55.
ZHAO Chunxia XU Guowang SHI Xianzhe MA Jianmei ZHANG Yan L?Shen & YANG Qing . Dalian Institute of Chemical Physics Chinese Academy of Sciences Dalian China . Cell Laboratory Second Affiliated Hospital Dalian Medical University Dalian China 《中国科学B辑(英文版)》2004,47(2):166-172
With the accomplishment of Human Genome Project (HGP), single nucleotide polymorphism (SNP) and mutation detection in human genome are becom-ing a new researching focus. These researches can help us to understand the phenotype diversity of indi-vidual, disease susceptibility and drug resistance of different colonies. Traditional method used for muta-tion detection is slab gel electrophoresis, which re-mains labor-intensive and time-consuming because of the requirement of radioactivity or te… 相似文献
56.
DNA works as hereditary material and plays vital role in life science. The study of the binding of small molecules complex to DNA has been the focus of intense investigation, owning to their stereo and sequence specific interaction with the double helix1-… 相似文献
57.
The structure of the local anaesthetic benzocaine was solved by direct methods and refined to anR of 0·12 for 531 observed reflections. The packing of the molecule is stabilised by N−H … O hydrogen-bonds (2–97 ?). The alkyl
chain attached to the benzene ring is intrans-trans conformation. The benzoic moiety shows a quinonoid character as found in some other local anaesthetics.
DCB contribution No. 699 相似文献
58.
Monika Tarnowska Adam Liwo Mark D. Shenderovich Inta Liepiņa Alexander A. Golbraikh Zbigniew Grzonka Anna Tempczyk 《Journal of computer-aided molecular design》1993,7(6):699-719
Summary The effect of the substitution in position 1 on the low-energy conformations of the oxytocin/vasopressin 20-membered ring was investigated by means of molecular mechanics. Three representative substitutions were considered: -mercapto-,-dimethyl)propionic acid (Dmp), (-mercapto-,-cyclopentamethylene)propionic acid (Cpp), both forming strong antagonists, and (,-dimethyl--mercapto)propionic acid (-Dmp), forming analogs of strongly reduced biological activity, with the -mercaptopropionic (Mpa) residue taken as reference. Both ECEPP/2 (rigid valence geometry) and AMBER (flexible valence geometry) force fields were employed in the calculations. Three basic types of backbone conformations were taken into account which are distinguished by the type of -turn at residues 3 and 4: 1/III, II, and I/III, all types containing one or two intra-annular hydrogen bonds. The allowed (ring-closed) disulfide-bridge conformations were searched by an algorithm formulated in terms of scanning the disulfide-bridge torsional angle C-S-S-C. The ECEPP/2 and AMBER energies of the obtained conformations were found to be in reasonable agreement. Two of the low-energy conformers of the [Mpa1]-compound agreed very well with the cyclic part of the two conformers found in the crystal structure of [Mpa1]-oxytocin. An analysis of the effect of -substitution on relative energies showed that the conformations with the N-C-CH2-CH2 (1) and C-CH2-CH2-S (1) angles of the first residue around (–100°, 60°) and (100°, –60°) are not affected; this in most cases implies a left-handed disulfide bridge. In the case of -substitution the allowed values of 1 are close to ± 60°. This requirement, being in contradiction to the one concerning -substitution, could explain the very low biological activity of the -substituted analogs. The conformational preferences of substituted compounds can largely be explained by the analysis of local interactions within the first residue. Based on the selection of the conformations which are low in energy for both the reference and -substituted compounds, two distinct types of possible binding conformations were proposed, the first one being similar to the crystal conformer with a left-handed disulfide bridge, the second one having a right-handed bridge, but a geometry different from that of the crystal conformer with the right-handed bridge. The first type of disulfide-bridge arrangement is equally favorable for both I/III and II types of backbone structure, while the second one is allowed only for the II type of backbone. No conformation of the I/III type has a low enough energy to be considered as a possible binding conformation for all of the active compounds studied in this work. 相似文献
59.
G. A. Zhurko V. V. Aleksandriiskii V. A. Burmistrov 《Journal of Structural Chemistry》2006,47(4):622-628
Quantum chemical calculations of the structure and conformational state of a number of Shiff bases have been performed. 13C NMR spectra of investigated molecules were calculated and compared with experimental data to test verification of the used calculation model. The effect of terminal substituents on the conformation of azomethines and a relation between the conformation and 13C NMR chemical shift were examined. 相似文献
60.
Single crystals of Li4(PO2NH)4 · 4 H2O were obtained by dissolving LiOH and H4(PO2NH)4 · 2 H2O in water and subsequent precipitation with acetone and ethanol followed by slow evaporation of the solvents. The structure of Li4(PO2NH)4 · 4 H2O was solved by single‐crystal X‐ray methods ( (No. 2), a = 489.2(2), b = 853.2(2), c = 880.5(2) pm, α = 101.71(3), β = 102.39(3), γ = 94.88(3)°, Z = 1). The structure is composed of LiO4 tetrahedra and (PO2NH)44? ions. The P4N4 rings of the anions exhibit a slightly distorted chair–1 conformation, which is supported by IR data and has been described by torsion angles, displacement asymmetry parameters and puckering parameters. Via Li+ ions and hydrogen bonds, the tetrametaphosphimate anions are connected forming a three‐dimensional network. 相似文献