Thermodynamics of formation of nitrogen bases and d-ribose from mineral substances in light of the problem of origination of simplest elements of living matter

The paper represents a further development of our hydrate hypothesis of simplest living matter origination (SLMO) from inorganic and simplest organic mineral substances. It is supposed that the sources of SLMO are simplest aliphatic hydrocarbons, niters, and phosphates. Thermodynamic calculations demonstrating a principal possibility for simultaneous syntheses of different nitrogen bases, d-ribose, and desoxy-d-ribose from these source substances are presented. The most probable principal mechanism of SLMO and the principal conditions necessary for realization of the proposed chemism of SLMO in the framework of the proposed mechanism are considered. A principal means for testing the hypothesis is proposed.     

Molecular Recognition of Bases and Nucleosides by Mono－substituted Mononuclear Complexes of 1,4,7,10－Tetraaza－cyclododecane

The mononuclear macrocyclic polyamine metal complexes 5a-5e have been shown to form stable 1 : 1 complexes with bases and nucleosides. Their binding constants (K) were determined by UV-visible spectrometric titration. The results show that recognition ability of the complexes 5a--5e for uracil, U (Uridine), dT (Thymidine) is higher than that for the other bases or nucleosides (such as Cytidine, Guanosine, Adenosine). The metal ion also plays an important role for the recognition ability of complexes.     

Spectrochemical Properties of Noncubical Transition Metal Complexes in Solution. XII. Angular Overlap Studies of Salicylideneethylenediamine Cu(II) Complex in Various Solvents

As a part of our general interest in the UV-Vis spectroscopy of multidentate mixed-donor ligands, the (salicylideneethylenediamine)Cu(II) complex has been prepared and characterized by elemental analyses, solubility in common solvents, molar conductivities, and ultraviolet (UV), and visible (Vis) spectroscopy. The combined results of spectrophotometric measurements and EPR spectra, as well as known the X-ray structure for solids, were used to determine the structure of the investigated complex in solutions. The spectra of [Cu(salen)] (H₂salen = salicylideneethylenediamine), were measured in various solvents at room temperature, resolved by Gaussian analysis, and angular overlap model (AOM) treated in C _2v symmetry. Because of overparametrization problems, the bis(salicylaldehyde)Cu(II) complex has been characterized and AOM treated. The results of this have been used for AOM studies of [Cu(salen)]. The effect of the solvents upon the - and -bonding ligand abilities is discussed.     

Ln(Ⅲ)与2-羟基-1-萘醛缩蛋氨酸盐及邻菲咯啉三元配合物的合成与表征

合成了稀土硝酸盐与希夫碱盐2-羟基-1-萘醛缩蛋氨酸钾(以KL表示)及邻菲咯啉(Phen)的四种固体三元配合物。通过元素分析，IR，UV，DTA-TG及摩尔电导分析等手段确定配合物的组成为[Ln(L)(Phen)(NO3)(H2O)]NO3(Ln＝Gd，Dy，Er，Yb)，并对它们的配合方式及某些物理和化学性质进行了研究。     

Synthesis,characterization and antimicrobial studies on 13-membered-N6-macrocyclic transition metal complexes containing trimethoprim

Asymmetrical macrocyclic complexes of Mn^II, Co^II, Ni^II, Cu^II and Zn^II have been synthesized by the template process using bis(benzil)ethylenediamine as precursor. Bis(benzil)ethylenediamine reacts with transition metal chlorides and trimethoprim in a 1:1:1 molar ratio in methanol to give several solid metal complexes of the general composition [M(L)X₂] (M = Mn^II, Co^II, Ni^II, Cu^II and Zn^II, L = ligand and X = Cl^?). They were characterized by physicochemical and spectroscopic techniques. Based on analytical, spectral and magnetic moments, all the complexes are identified as distorted octahedral structures. All the complexes are of the [M(L)X₂] type. The shifts of the ν(CN) (azomethine) stretches have been monitored. To find out the donor sites of the ligands, the activity data show that the metal complexes are more potent than the parent ligand. The [M(L)X₂] complexes showed a broad spectrum of antimicrobial activity in vitro against both gram-positive and gram-negative human pathogenic bacterial isolates and the antimicrobial spectrum enhanced only with a combination of metal chlorides and trimethoprim complex. From the results it is imperative that the synthesized macrocyclic [M(L)X₂] complexes exhibit potent broad spectrum antibacterial activity.     

Two‐ and Three‐Dimensional Molecular Organization of Schiff‐Base Derivatives

We have designed and synthesized a series of Schiff base derivatives, and studied their structural features in two‐dimensional (2D) and three‐dimensional (3D) states by combining scanning tunneling microscopy (STM) and X‐ray diffraction experiments. The Schiff‐base derivatives with short alkyl chains crystallize easily, which allows a detailed structural analysis by X‐ray diffraction. Due to the strong adsorbate–substrate interactions, those bases with long alkyl chains easily form 2D assemblies on highly oriented pyrolytic graphite (HOPG). The STM images indicate also that the introduction of two methoxy groups into the molecule can change the structure of these 2D assemblies as a result of the increased steric hindrances, for example: the Schiff‐base derivative, bearing both methoxy groups and C₁₆H₃₃ tails, forms 2D Moiré patterns, and an alignment of pairing Schiff‐base molecules may be easily resolved. Conversely, the Schiff base derivative, bearing solely C₁₆H₃₃ tails, forms 2D non‐Moiré patterns. It is demonstrated that the 3D structural features result from the compromise of intermolecular interactions of different molecular moieties. However, there is one more factor, which also governs the 2D structure: the adsorbate‐substrate interaction. The 3D crystal structure may thus help to understand many factors involved in the formation of 2D structures, and would be helpful for designing new molecular assemblies with tailoring functions.     

Synthesis and catalytic activity of new chiral unsymmetrical Mn(III)-Schiff-base complexes containing salicylaldehyde and 1-(2-hydroxyphenyl)ketone units

Two new chiral unsymmetrical (non-C₂-symmetric) Schiff-base ligands containing salicylaldehyde and 1-(2-hydroxyphenyl)ketone units were synthesized from (R,R)-1,2-diphenylethylenediamine as the chiral diamine using a stepwise approach. The Mn(III) complexes of the ligands were subsequently used as catalysts in asymmetric epoxidation of unfunctionalized alkenes and the results were compared with those obtained using typical C₂-symmetric Mn(III)–salen complexes. Possible reasons for the differences in reactivity and selectivity between the two types of catalysts are briefly discussed.     

Deprotonated and non-deprotonated cobalt(II) complexes of the bis-amide tetradentate ligand N,N′-(dipicolyl)-1,8-naphthylene diamine. Three different modes of coordination by the ligand

The preparation and some properties of the cobalt(II) complexes Co(LH₂)Cl₂·2H₂O, Co(LH₂(NCS)₂ and CoL·H₂O (whereLH₂=N,N-(dipicolyl)-1,8-naphthylenediamine) are reported. On the basis of magnetic moments, visible reflectance and IR data, the structure is proposed to be pseudo-octahedral for Co(LH₂)Cl₂·2 H₂O, pseudo-tetrahedral for Co(LH₂)(NCS)₂ and square planar for CoL·H₂O.

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Deprotonierte und Nicht-deprotonierte Co(II)-Komplexe des vierzähnigen Bisamid-Liganden N,N-(Dipicolyl)-1,8-naphthyldiamin. Drei verschiedene Koordinationstypen

Zusammenfassung Es werden die Darstellung und einige Eigenschaften der Kobalt(II)-Komplexe Co(LH₂)Cl₂·2 H₂O, Co(LH₂)(NCS)₂ und CoL·H₂O [LH₂=N,N-(dipicolyl)-1,8-naphthylendiamin] diskutiert. Auf der Grundlage von magnetischen Momenten, von Daten der sichtbaren Reflektions-und IR-Spektren wird eine pseudooctaedrische Struktur für Co(LH₂)Cl₂·2H₂O, eine pseudotetraedrische für Co(LH₂)(NCS)₂ und eine planar-quadratische für CoL·H₂O vorgeschlagen.

     

Matrix-isolation FT-IR and DFT theoretical studies of the intramolecular hydrogen bonding in Mannich bases

FT-IR Ar-matrix isolated spectra were studied for dichloro- (Cl₂-MB) and tetrachloroderivatives (Cl₄-MB) of the ortho Mannich base. The spectra were analyzed based on the DFT calculated frequencies and intensities and compared with those recorded in CCl₄ solution in the region of the ν(OH) and ν(OD) vibrations. The matrix-isolated spectra are characterized by narrower ν(OH) and ν(OD) bands with much better resolved fine structure than in solution. The fine structure originates from the anharmonic coupling with the low frequency modes as well as from Fermi resonance. The ν(OD) band shapes can be reproduced exclusively by assuming the Fermi resonance with overtones and summation of the frequencies of modes into which the bridge atoms are involved. The frequency isotopic ratio (ISR) is for both compounds 1.33 while the half-width ratios are equal to 1.82 and 1.94, for Cl₂-MB and Cl₄-MB, respectively.     

New Cu(II) complexes with polydentate chelating Schiff base ligands: Synthesis, structures, characterisations and biochemical activity studies

We have reported herein the synthesis of three new Cu(II) complexes of tri- and tetradentate Schiff base ligands containing N₃ or N₄ donor set along with terminal NNN⁻ or SCN⁻ ligands: [L¹Cu(NCS)]ClO₄ (1), [L²Cu(NCS)₂] (2) and [L³Cu(NNN)]ClO₄ (3) [L¹ = NC₅H₄C(CH₃)=N(CH₂)₃N=C(CH₃)C₅H₄N, L²= Me₂N–(CH₂)₃–N=C(CH₃)C₅H₄N and L³ = NC₅H₄CH=N–(CH₂)₄–N=CHC₅H₄N]. The complexes have been systematically characterised by elemental, spectroscopic and electrochemical techniques. Antimicrobial activities of the Schiff base ligands and their metal complexes have been studied using the disc diffusion method on the strains of Candida tropicalis and Bacillus megaterium. Structures of all the complexes have been unequivocally established from single crystal X-ray diffraction analyses that show the monomeric units containing a five-coordinated copper center in highly distorted square pyramidal geometry with thiocyanate or azide anion coordinated as terminal ligand. The complexes 1 and 3 crystallise in monoclinic (P2₁/c) and 2 in triclinic (P-1) space group, respectively.