酶分子在试管内的定向进化及其在手性有机物合成中的应用

本文扼要介绍了当今改进酶分子性能的有效手段———分子定向进化技术的基本方法如易错PCR和DNA洗牌,以及派生的一些新技术的原理与进展,并列举了在手性有机物合成中一些成功的实例,为该领域的研究与应用提供了一些新的信息。     

Synthesis and properties of N-carbazole end-capped conjugated molecules

A series of novel N-carbazole end-capped π-conjugated molecules were synthesized by a divergent approach with the use of bromination, Suzuki cross-coupling, and Ullmann reactions and their physical properties were investigated. In dilute solution, UV-vis absorption spectra displayed bathochromic shift with respect to their conjugated backbones, and photoluminescence spectra showed emission maxima in the blue region. Thermal analysis revealed that they are thermally stable semi-crystalline and amorphous materials. All molecules exhibited good electrochemical stability with high-lying HOMO energy levels and have potential applications as hole-transporting and light-emitting layers in organic light-emitting diodes or as host materials for electrophosphorescent applications.     

Dynamics of intramolecular processes in electronic-excited states of 2,4,5-triarylimidazole molecules

Intramolecular processes in electronic-excited states of 2,4,5-triarylimidazole molecules were studied by femtosecond laser spectroscopy. Experiments were carried out with two types of compounds, namely, those experiencing intramolecular proton transfer and two model compounds in which it is impossible. Schemes of the processes studied were proposed and the characteristic rate constants were determined. The excited-state intramolecular proton transfer (ESIPT) in the molecules with planar structure of the reaction center is a very fast process (100 fs). If the reaction center has a nonplanar structure and, hence, the intramolecular hydrogen bond is weakened, the ESIPT time is determined by the time of conformational rearrangement of the molecule.     

Fuzzy Symmetries for Linear Molecules and their Molecular Orbitals

In this paper, the fuzzy symmetry of some prototypical linear molecules has been analyzed. The results show that some molecular orbitals (MOs) are less symmetrical but some others are more symmetrical than the molecular skeleton, which the MOs correspond to. The membership functions of space inversion for MOs are closely related to the chemical characteristics of the MOs. Sometimes, although the symmetry of a molecular skeleton is not obvious, however that of some MO is quite obvious. The membership functions of the fuzzy inversion symmetry depend on the choice of the position of the center of inversion. As compared to those of diatomic molecules and linear tri-atomic molecules, the linear polyatomic molecules in which a distinctive fuzzy symmetry of space translation may exist, and thus a significant effect on their properties can be expected.     

The de novo design of median molecules within a property range of interest

Summary In this paper an application is presented of the median molecule workflow to the de novo design of novel molecular entities with a property profile of interest. Median molecules are structures that are optimised to be similar to a set of existing molecules of interest as an approach for lead exploration and hopping. An overview of this workflow is provided together with an example of an instance using the similarity to camphor and menthol as objectives. The methodology of the experiments is defined and the workflow is applied to designing novel molecules for two physical property datasets: mean molecular polarisability and aqueous solubility. This paper concludes with a discussion of the characteristics of this method.     

A detailed analysis of pseudorotation in PH4F

Summary Pentacoordinated molecules are thought to undergo intramolecular isomerization by the widely accepted Berry pseudorotation mechanism. Through our investigations, we have found that the actual pseudorotation for the PH₄F system is more complex than that envisioned by Berry. The potential energy surface of PH₄F is mapped out at the RHF/6-311G(d, p) level. According to the Berry mechanism, this system is expected to have two minima and two maxima; however, the system actually has two transition states and one global minimum. The minimum energy path from the highest transition state is followed to the second transition state, which in turn has a minimum energy path leading to the global minimum. Along the path between the two transition states there is a branching region. This portion of the potential energy surface is probed extensively.Dedicated to Prof. Klaus Ruedenberg     

Calculations of the electronic structures of cage molecules using free-electron orbitals as a basis

A non-empirical molecular orbital method, particularly suitable for calculations on cage-like molecules, is described. The method uses as basis functions the set of free-electron functions which are the solutions of Schrödinger's equation for an electron confined between two concentric, spherical potential energy barriers. Application of the theory to the SCF calculation of the energies of the delocalized electrons in benzene and tetrasulphur tetranitride shows that the model is capable of interpreting the properties of such systems. However, it does highlight a difficulty in the calculation of excited state energies with one-centre models which appears to be largely unrecognized.Extension of the method to a consideration of all the valence electrons, using P₄ as an example, reveals problems the origin of which is an inadequate treatment of the core electrons. It is suggested that these problems may best be dealt with by use of a suitable pseudo potential.     

Interaction between Metal in Metallo Enzyme and Small Biological Molecules

ＩｎｔｅｒａｃｔｉｏｎｂｅｔｗｅｅｎＭｅｔａｌｉｎＭｅｔａｌｌｏＥｎｚｙｍｅａｎｄＳｍａｌｌＢｉｏｌｏｇｉｃａｌＭｏｌｅｃｕｌｅｓ￥ＨｕＪｉｅ－Ｈａｎ；ＳｈｕＺａｎ－Ｙｏｎｇ；ＴａｏＬｉ－Ｍｅｉ；ＣｈｅｎｇＧｕｏ－Ｂａｏ（ＤａｌｉａｎＩｎｓｔｉｔｕｔ...     

液相色谱中一个新的表征参数Z：Ⅱ.反相液相色谱中小分子极性溶质体系

反相高效液相色谱（ＲＰＬＣ）中小分子极性溶质的极性是可以用液相色谱中溶质计量置换保留模型中的Ｚ值（１ｍｏｌ溶质被固定相吸附时，在固定相与溶质子间释放出置换剂的ｍｏｌ数）来表征的，其大小可用带有该极性端基的同系物的Ｚ值对碳原子数线性作图的截距求得。这些检性基的Ｚ测量定值与疏水性片段指数１ｇｆ间有极好的线性关系。依此关系还可测出一些用其他实验方法无法测得的某些基团的１ｇｆ值。     

Permutation representations in molecular symmetry

The reducible representations of the point groups are generally studied because of their relevance to molecular orbital and vibration theory. Triple correlations within the polyhedra are described by group-theoretical invariants that are related to the permutation representations and termed polyhedral isoscalar factors. These invariants are applied in theorems on matrix elements referring to the symmetry-adapted bases at different centres. Further invariants or geometrical weight factors inter-relate different types of reduced matrix elements of irreducible tensors (generalization of the Wigner-Eckart theorem to the polycentric case). As a demonstration a complete tabulation is given for the point group C ₄.