Toward direct determination of conformations of protein building units from multidimensional NMR experiments. V. NMR chemical shielding analysis of N-formyl-serinamide,a model for polar side-chain containing peptides

Knowledge of chemical shift-structure relationships could greatly facilitate the NMR chemical shift assignment and structure refinement processes that occur during peptide/protein structure determination via NMR spectroscopy. To determine whether such correlations exist for polar side chain containing amino acid residues the serine dipeptide model, For-L-Ser-NH(2), was studied. Using the GIAO-RHF/6-31+G(d) and GIAO-RHF/TZ2P levels of theory the NMR chemical shifts of all hydrogen ((1)H(N), (1)H(alpha), (1)H(beta1), (1)H(beta2)), carbon ((13)C(alpha), (13)C(beta), (13)C') and nitrogen ((15)N) atoms have been computed for all 44 stable conformers of For-L-Ser-NH(2). An attempt was made to establish correlation between chemical shift of each nucleus and the major conformational variables (omega(0), phi, psi, omega(1), chi,(1) and chi(2)). At both levels of theory a linear correlation can be observed between (1)H(alpha)/phi, (13)C(alpha)/phi, and (13)C(alpha)/psi. These results indicate that the backbone and side-chain structures of For-L-Ser-NH(2) have a strong influence on its chemical shifts.     

Model of the Negative DC Corona Plasma: Comparison to the Positive DC Corona Plasma

A numerical model of the negative DC corona plasma along a thin wire in dry air is presented. The electron number density and electric field are determined from solution of the one-dimensional coupled continuity equations of charge carriers and Maxwell's equation. The electron kinetic energy distribution is determined from the spatially homogeneous Boltzmann equation. A parametric study is conducted to examine the effects of linear current density (0.1–100 A per cm of wire length), wire radius (10–1000 m), and air temperature (293–800 K) on the distribution of electrons and the Townsend second ionization coefficient. The results are compared to those previously determined for the positive corona discharge. In the negative corona, energetic electrons are present beyond the ionization boundary and the number of electrons is an order of magnitude greater than in the positive corona. The number of electrons increases with increasing gas temperature. The electron energy distribution does not depend on discharge polarity.     

Thermodynamic possibilities and constraints of pure hydrogen production by a chromium,nickel, and manganese-based chemical looping process at lower temperatures

The reduction of chromium, nickel, and manganese oxides by hydrogen, CO, CH₄, and model syngas (mixtures of CO + H₂ or H₂ + CO + CO₂) and oxidation by water vapor has been studied from the thermodynamic and chemical equilibrium point of view. Attention was concentrated not only on the convenient conditions for reduction of the relevant oxides to metals or lower oxides at temperatures in the range 400–1000 K, but also on the possible formation of soot, carbides, and carbonates as precursors for the carbon monoxide and carbon dioxide formation in the steam oxidation step. Reduction of very stable Cr₂O₃ to metallic Cr by hydrogen or CO at temperatures of 400–1000 K is thermodynamically excluded. Reduction of nickel oxide (NiO) and manganese oxide (Mn₃O₄) by hydrogen or CO at such temperatures is feasible. The oxidation of MnO and Ni by steam and simultaneous production of hydrogen at temperatures between 400 and 1000 K is a difficult step from the thermodynamics viewpoint. Assuming the Ni—NiO system, the formation of nickel aluminum spinel could be used to increase the equilibrium hydrogen yield, thus, enabling the hydrogen production via looping redox process. The equilibrium hydrogen yield under the conditions of steam oxidation of the Ni—NiO system is, however, substantially lower than that for the Fe—Fe₃O₄ system. The system comprising nickel ferrite seems to be unsuitable for cyclic redox processes. Under strongly reducing conditions, at high CO concentrations/partial pressures, formation of nickel carbide (Ni₃C) is thermodynamically favored. Pressurized conditions during the reduction step with CO/CO₂ containing gases enhance the formation of soot and carbon-containing compounds such as carbides and/or carbonates.     

Thermal decomposition of sodium nitrite and sodium nitrate pre-adsorbed on TiO2 surfaces

The thermal decomposition of sodium nitrite or nitrate pre-adsorbed upon TiO₂ surfaces has been investigated by employing several techniques as infrared spectroscopy (IR) and temperature programmed desorption in conjunction with mass spectrometry analysis (TPD-MS) to study the features observed during these thermal decompositions. Differential thermal analysis (DTA) in combination with X-ray diffraction analysis (XRD) were used to investigate the possibility of a solid state chemical reaction between the solid products originated from the thermal decomposition of the pre-adsorbed species and the TiO₂. On the basis of our results, various characteristic features of these thermal decomposition reactions will be discussed.This work was supported by JUNTA DE ANDALUCIA (financial support for research groups/1990).     

Electrochemical and quantum chemical investigation of the CuI and CuII complexes with biquinolyl monomer and polymer ligands

Structural reorganization of polyamide (PA) and low-molecular-weight Cu^I and Cu^II complexes with biquinolyl (biQ) ligands during their mutual redox transformations in solution was studied using the electrochemical methods (cyclic voltammetry and preparative electrolysis) and quantum chemical DFT calculations. The influence of electronic factors and geometry distortions in the complexes on the ionization energy on going from Cu^I to Cu^II was evaluated in comparison. The catalytically active form of the [Cu^I(PA)L₂]BF₄ complex can be synthesized in situ from the stable tetrahedral complex [Cu^I(PA)₂]BF₄ by the series of successive redox transitions Cu^I → Cu^II → Cu^I accompanied by the loss of one biQ-containing macroligand. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7, pp. 1331–1340, July, 2007.     

The theory of non-Cottrellian diffusion on the surface of a sphere or truncated sphere.

A method is developed whereby spherical and other particles can be derivatised with electroactive species on their surface and then immobilised on the surface of an electrode. The chronoamperometric and voltammetric responses in the limit of reversible electrode kinetics are modelled using a theory of charge movement over the surface of the spheres where this movement is considered as a diffusional process. The model is extended to include different distributions of sphere radii and to model the scenario of truncated spheres resting on the electrode surface. It is found that a good estimation of the truncation angle can be found by fitting the experimental data with theoretical predictions.     

Chemical mass shifts in resonance ejection experiments in the quadrupole ion trap

Chemical mass shifts were measured in a Paul ion trap operated in the mass-selective instability scan with resonance ejection using a custom-built instrument. These shifts, which can be as much as 2%, decrease with increasing endcap electrode separation owing to changes in the higher order contributions to the electric field. They also decrease with decreasing helium buffer gas pressure. Both of these effects are analogous to those found with boundary ejection. This suggests that the previously proposed chemical mass shift mechanism based on compound-dependent collisional modification of the ejection delay produced by field faults near the endcap electrode apertures holds true also for resonance ejection. The influence of the resonance frequency on chemical mass shifts was also investigated and it is shown that at certain working points (values of the Mathieu parameter q(z) and a(z)) non-linear resonances greatly reduce the ejection delay for all ions, regardless of their chemical structures, and thus reduce the magnitude of the chemical mass shift. Energetic collisions leading to dissociation can take place at an earlier stage during the ejection process in the mass analysis scan when using resonance ejection compared with boundary ejection. This leads to even larger chemical mass shifts of fragile ions in resonance ejection. Increasing the resonance voltage amplitude can enhance this effect. The chemical mass shifts of fragile ions increase with increase in the resonance voltage amplitude, whereas negligible changes occur for structurally stable ions.     

ESCA: Electron Spectroscopy for Chemical Analysis

A substance on which X-rays fall emits photoelectrons and Auger electrons. The energy spectra of the electrons emitted provide information about the electronic structure in the specimen, ranging from the innermost atomic levels and their dependence on the chemical environment to the molecular orbitals of the valence electrons and the band structure in solids. Electron spectra of this nature can now be recorded with high-resolution instruments; their analysis offers new aspects for investigation of chemical composition. The method of electron spectroscopy developed for this purpose, which has now been developed to a high degree of perfection, will be referred to in the following discussion as ESCA (Electron Spectroscopy for Chemical Analysis).     

Structure of 4-[4-(Dimethylamino)-Phenylazo] Benzeneboronic Acid and Its Cyclic Esters with D-Glucose: A Computational Study

We present results from a computational study of 4-[4-(dimethylamino)-phenylazo] benzene boronic acid (DABBA) (the 4'-boronic acid isomer of the aminoazobenzene dye N,N-dimethylaminoazobenzene) and its associated anion, as well as, several cyclic esters formed from these azoborates and various conformers of D-glucose. Azo dyes that also contain one or more boronic acid functional groups are of practical importance in the development of chemical sensors for saccharide recognition because of their ability to induce a visible color change upon binding. The lowest-energy DABBA:D-glucose esters found in this investigation consistently involved at least one of the exocyclic hydroxymethyl groups on the D-glucose moiety rather than vicinal cis or trans diol arrangements of hydroxyl groups on the ring.