Revisiting the absolute chirality and polymorphism of (–)‐Istanbulin A

The terpenoid (?)‐Istanbulin A is a natural product isolated from Senecio filaginoides DC, one of the 270 species of Senecio (Asteraceae) which occurs in Argentina. The structure and absolute configuration of this compound [9a‐hydroxy‐3,4a,5‐trimethyl‐4a,6,7,8a,9,9a‐hexahydro‐4H,5H‐naphtho[2,3‐b]‐furan‐2,8‐dione or (4S,5R,8R,10S)‐1‐oxo‐8β‐hydroxy‐10βH‐eremophil‐7(11)‐en‐12,8β‐olide, C₁₅H₂₀O₄] were determined by single‐crystal X‐ray diffraction studies. It proved to be a sesquiterpene lactone showing an eremophilanolide skeleton whose chirality is described as 4S,5R,8R,10S. Structural results were also in agreement with the one‐ and two‐dimensional (1D and 2D) NMR and HR–ESI–MS data, and other complementary spectroscopic information. In addition, (?)‐Istanbulin A is a polymorph of the previously reported form of (?)‐Istanbulin A, form I; thus, the title compound is denoted form II or polymorph II. Structural data and a literature search allowed the chirality of Istanbulin A to be revisited. The antimicrobial and antifungal activities of (?)‐Istanbulin A, form II, were evaluated in order to establish a reference for future comparisons and applications related to specific crystal forms of Istanbulins.     

Terezine E,bioactive prenylated tryptophan analogue from an endophyte of Centaurea stoebe

Abstract

Fungal endophytes are considered promising sources of new bioactive natural products. In this study, a Mucor sp. has been isolated as an endophyte from the medicinal plant Centaurea stoebe. Through bioactivity-guided fractionation, the isolation of the new bioactive terezine E in addition to the previously reported 14-hydroxyterezine D was carried out. The isolated compounds were fully characterised by HRESIMS and 1D and 2D NMR analyses. Both compounds exhibited potent antiproliferative activity against K-562 and HUVEC cell lines and antifungal efficacy against the tested fungal strains.     

Two new compounds from the heartwood of Dalbergia melanoxylon

Abstract

A new neoflavonoid, named S(+)-3′-hydroxy-4′,2,4,5-tetramethoxydalbergiquinol (1), and a new benzofuran, named (2S,3S)-5-hydroxy-6-methoxy-3-methyl-2-(4′-hydroxyphenyl)-2,3dihydrobenzofuran (4), together with two known neoflavonoids, were isolated from the heartwood of Dalbergia melanoxylon. Their structures were elucidated by a combination of spectroscopic methods and comparison with the literature. Compounds 1–4 were evaluated for inhibitory activity against Staphylococcus aureus ATCC 25923, Escherichia coli ATCC 6538, Salmonella enteri CMCC 50041 and Candida albicans ATCC 289065, which all exhibited inactive or weak activity.     

Hydrophilic Quaternary Ammonium Ionenes—Is There an Influence of Backbone Flexibility and Topology on Antibacterial Properties?

The antimicrobial properties of polycations are strongly affected by the structural features such as the backbone flexibility and topology (isomerism) through the polymer ability to attain proper conformation in interaction with the cell membrane. In this paper, a synthesis and biocidal properties evaluation of ionenes characterized by different backbone topology (isomerism) and flexibility are presented. The findings reveal influence of variation in topology on activity against different microorganisms, and general positive effect of improved flexibility. Furthermore, one of the obtained ionenes displays degradable properties in near physiological environment (phosphate‐buffered saline pH 7.4, 37 °C). The degradation proceeds via Hofmann elimination reaction and the products are not of acidic character. For the first time a new class of degradable ionenes with a high antimicrobial potential is presented.     

Specific rearrangement reactions of acetylated lysine containing peptide bn (n = 4–7) ion series

Characterization of ε‐N‐acetylated lysine containing peptides, one of the most prominent post‐translational modifications of proteins, is an important goal for tandem mass spectrometry experiments. A systematic study for the fragmentation reactions of b ions derived from ε‐N‐acetyllysine containing model octapeptides (K_AcYAGFLVG and YAK_AcGFLVG) has been examined in detail. Collision‐induced dissociation (CID) mass spectra of b_n (n = 4–7) fragments of ε‐N‐acetylated lysine containing peptides are compared with those of N‐terminal acetylated and doubly acetylated (both ε‐N and N‐terminal) peptides, as well as acetyl‐free peptides. Both direct and nondirect fragments are observed for acetyl‐free and singly acetylated (ε‐N or N‐terminal) peptides. In the case of ε‐N‐acetylated lysine containing peptides, however, specific fragment ions (m/z 309, 456, 569 and 668) are observed in CID mass spectra of b_n (n = 4–7) ions. The CID mass spectra of these four ions are shown to be identical to those of selected protonated C‐terminal amidated peptides. On this basis, a new type of rearrangement chemistry is proposed to account for the formation of these fragment ions, which are specific for ε‐N‐acetylated lysine containing peptides. Consistent with the observation of nondirect fragments, it is proposed that the b ions undergo head‐to‐tail macrocyclization followed by ring opening. The proposed reaction pathway assumes that b_n (n = 4–7) of ε‐N‐acetylated lysine containing peptides has a tendency to place the K_Ac residue at the C‐terminal position after macrocyclization/reopening mechanism. Then, following the loss of CO, it is proposed that the marker ions are the result of the loss of an acetyllysine imine as a neutral fragment. Copyright © 2014 John Wiley & Sons, Ltd.     

Crystal structure of Alanine‐Copper(II) complex to understand the mechanism of salt induced prebiotic oligomerization of amino acids

Oligomerization of amino acid monomers is the vital step in the formation of longer peptides and functional proteins. In spite of continuing efforts towards solving the puzzle of origin of life, the mystery of chemical evolution remains unsolved. Out of various pathways proposed for the formation of peptides under prebiotic conditions, salt induced peptides synthesis presents the most plausible scenario. In attempts to study mechanism of prebiotic oligomerization of amino acid on primitive earth the current study was aimed to determine the crystal structure of intermediate copper amino acid complex and its supra‐molecular assembly. The Structure of the copper alanine complex obtained from SIPF was studied by x‐ray crystallography. The self‐assembling properties of complex into supra‐molecular nanostructures were studied using Field‐emission electron microscopy (FE‐SEM). Results showed the occurrence of racemization of amino acids. This is the first structural study for copper alanine complex formed from prebiotic peptide synthesis pathway. The aggregational properties of intermediate complex showed the formation of rod like crystals and nanospheres. The findings from our study showed the possible mechanism of prebiotic oligomerization of amino acids on the primitive earth towards formation of longer peptides and functional proteins.     

Integrated Antimicrobial and Nonfouling Zwitterionic Polymers

Zwitterionic polymers are generally viewed as a new class of nonfouling materials. Unlike their poly(ethylene glycol) (PEG) counterparts, zwitterionic polymers have a broader chemical diversity and greater freedom for molecular design. In this Minireview, we highlight recent microbiological applications of zwitterionic polymers and their derivatives, with an emphasis on several unique molecular strategies to integrate antimicrobial and nonfouling properties. We will also discuss our insights into the bacterial nonfouling performance of zwitterionic polymers and one example of engineering zwitterionic polymer derivatives for antimicrobial wound‐dressing applications.     

Stereoselective Metal‐Free Synthesis of β‐Amino Thioesters with Tertiary and Quaternary Stereogenic Centers

β‐Amino thioesters are important natural building blocks for the synthesis of numerous bioactive molecules. An organocatalyzed Mannich reaction was developed which provides direct and highly stereoselective access to acyclic β²‐ and β^2,3,3‐amino thioesters with adjacent tertiary and quaternary stereocenters. Mechanistic studies showed that the stereochemical course of the reaction can be controlled by the choice of the substrates. The β‐amino thioesters were further functionalized by, for example, stereoselective decarboxylation to access β^2,3‐frameworks. In addition, the value of the β‐amino thioesters was shown in coupling‐reagent‐free peptide synthesis.     

Protease Probes that Enable Excimer Signaling upon Scission

Peptide‐based probes that fluoresce upon proteolytic cleavage are invaluable tools for monitoring protease activity. The read‐out of protease activity through pyrene excimer signaling would be a valuable asset because the large Stokes shift and the long lifetime of the excimer emission facilitate measurements in autofluorescent media such as blood serum. However, proteolytic cleavage abolishes rather than installs the proximity relationships required for excimer signaling. Herein, we introduce a new probe architecture to enable the switching on of pyrene excimer emission upon proteolytic scission. The method relies on hairpin‐structured peptide nucleic acid (PNA)/peptide hybrids with pyrene units and anthraquinone‐based quencher residues positioned in a zipper‐like arrangement within the PNA stem. The excimer hairpin peptide beacons afforded up to a 50‐fold enhancement of the pyrene excimer emission. Time‐resolved measurements allowed the detection of matrix metalloprotease 7 in human blood serum.     

Synthesis of and Specific Antibody Generation for Glycopeptides with Arginine N‐GlcNAcylation

As a unique and unappreciated protein posttranslational modification, arginine N‐glycosylation was recently discovered to play an important role in the process that bacteria counteract host defenses. To provide chemical tools for further proteomic and biochemical studies on arginine N‐glycosylation, we report the first general strategy for a rapid and cost‐effective synthesis of glycopeptides carrying single or multiple arginine N‐GlcNAcyl groups. These glycopeptides were successfully utilized to generate the first antibodies that can specifically recognize arginine N‐GlcNAcylated peptides or proteins in a sequence‐independent manner.