Short range photoinduced electron transfer in proteins: QM-MM simulations of tryptophan and flavin fluorescence quenching in proteins

Hybrid quantum mechanical-molecular mechanics (dynamics) were performed on flavin reductase (Fre) and flavodoxin reductase (Fdr), both from Escherichia coli. Each was complexed with riboflavin (Rbf) or flavin mononucleotide (FMN). During 50 ps trajectories, the relative energies of the fluorescing state (S₁) of the isoalloxazine ring and the lowest charge transfer state (CT) were assessed to aid prediction of fluorescence lifetimes that are shortened due to quenching by electron transfer from tyrosine. The simulations for the four cases display a wide range in CT–S₁ energy gap caused by the presence of phosphate, other charged and polar residues, water, and by intermolecular separation between donor and acceptor. This suggests that the Gibbs energy change (ΔG₀) and reorganization energy (λ) for the electron transfer may differ in different flavoproteins.     

无脂链磺化酞菁铜多层膜体系：电子非弹性平均自由程的研究

磺化酞菁铜多层膜体系是利用Langmuir-Blodgett技术制备的有序有机分子膜,它对于XPS测试有很好的稳定性,本文在固定电子出射角的条件下利用XPS方法研究了不同厚度的膜样品中Cu_((2(?))_(3/2))、Ni_(1(?))、S_(2p)峰强度的变化规律,讨论了膜内分子有序排列引起的散射效应对电子平均自由程的影响。     

Cation influence on the structure and electron density of water in some Men+·H2O complexes

The cation influence on the water molecule in the Li⁺·H₂O, Be²⁺·H₂O, Mg²⁺·H₂O and A1³⁺·H₂O complexes has been studied by means of quantum-mechanical ab initio calculations. A number of general trends are noted. (1) The calculated equilibrium water O-H distances increase with increasing binding energies, i.e. in the order Li⁺, Mg²⁺, Be²⁺, Al³⁺. The H-O-H angles differ by about ±1 ° from the calculated equilibrium angle for the free H₂O molecule; the variation has no systematic trend. (2) The electron density redistribution accompanying the change in the internal H₂O geometry in these complexes is considerably smaller than the redistribution brought about by the direct influence of the external field. (3) The harmonic O-H stretching force constant decreases with increased cation-water bonding. (4) The qualitative features of the density changes are very similar for the four complexes. The magnitudes of the interactions follow the relation Li⁺ < Mg²⁺ < Be²⁺ Al³⁺. An increased polarization of the H₂O molecule occurs with electron migration from the H atoms towards the O atom and an accumulation of electron charge approximately at the centre of the Meⁿ⁺—O bond, especially in Be²⁺·H₂O and A1³⁺·H₂O. An electron deficiency is found in the lone-pair region.     

硫化镉钠米微粒在聚合物网络中的组装

硫化镉钠米微粒在聚合物网络中的组装黄金满，杨毅，杨柏，刘式墉，沈家骢（吉林大学分子光谱与分子结构重点实验室、集成光电子国家重点实验室，长春，１３００２３）关键词组装，纳米微粒，离子交换，透射电子显微镜，电子衍射由于纳米半导体微粒的物理和化学性质介于分...     

Identification of radicals spin-trapped in autoxidized linoleic acids: A high performance liquid chromatography and electron spin resonance study

Radicals generated in linoleic acid and deuterated linoleic acid have been trapped by the spin trap 2-methyl-2-nitroso-propane (MNP) and identified by electron spin resonance (ESR) and ENDOR spectroscopy. The formation of two distinct secondary alkyl radical adducts (one conjugated, the other non-conjugated, as shown by their UV absorption spectra) was demonstrated by 11, 11-dideuterio-9-cis-12-cis-linoleic acid using HPLC and ESR spectroscopy.     

Optical emission spectroscopy as a real time diagnostic tool for plasma-assisted deposition of TiN

Real-time optical emission spectroscopy (OES) was used to monitor the deposition of TiN both from mixtures of tetrakis(dimethylamino)titanium (TDMATi)-N₂ and TiCl₄-H₂-N₂ in an electron cyclotron resonance chemical vapor deposition system. The accurate control of the ratio of the emission intensities of ionized nitrogen at 391.4 nm and molecular nitrogen at 357.7 nm (N ₂ ⁺ /N₂) led to low temperature deposition of stoichiometric TiN (Ti/N ≈ 1) and very low resistivity in both cases. It was found that high ion density plasmas are crucial for a considerable reduction of the deposition temperature while maintaining good film quality. OES shows that the abundance of certain excited plasma species is not only dependent on the gas mixture and the deposition parameters, such as total pressure and microwave power, but also is strongly affected by the magnetic field configuration. The deposition rate and the film resistivity can be related to the emission intensity ratio, I(N ₂ ⁺ )/I(N₂). Finally, the two processes are compared in terms of the quality of as-deposited and heat-treated films. The comparison shows that the films obtained with TDMATi exhibit lower resistivity and are thermally more stable than with TiCl₄.     

Comparison of the Hartree-Fock,Møller-Plesset,and Hartree-Fock-Slater method with respect to electrostatic properties of small molecules

Summary The results of various quantum chemical calculations, the Hartree-Fock (HF) method, the Møller-Plesset perturbation theory (MP2), and the Hartree-Fock-Slater (HFS) method are compared. Atomic charges, dipole moments, topological properties of the electron density distribution and polarizabilities, and first hyperpolarizabilities are calculated. Atomic charges obtained with the HFS method are found to be very close to those calculated with the MP2 method, from which we conclude that the HFS method describes to some extent electron correlation effects. Performing an MP2 calculation after an HF calculation improves the molecular dipole moments considerably, yielding values close to the experimental ones. HFS calculations are computationally less demanding than MP2 and yield comparable results for the electron density distributions, dipole moments and polarizabilities.     

Hypercoulometric effect in an electron capture detector polarized with an additional voltage

Summary This paper reports measurements of the current characteristics and of the signal corresponding to a constant concentration of Freon F-11 for an electron-capture detector, supplied with a pulse voltage with a changeable pulse duration, amplitude and repetition time. It was found that an additional voltage applied to the detector cathode increased the detector signal by about 50% and that the maximal signal was observed at 5 V. The influence of the polarized voltage on the electron caputure efficiency coefficient (p) measured with two detectors in series was demonstrated and the reliability of the sample mass calculation by means of (p) is discussed.     

氰基乙烯基苯胺衍生物的电化学行为

本文利用循环伏安法研究了电子给-受体模型化合物——氰基乙烯基苯胺衍生物的电化学行为,并对推电子取代基团—NH_2和—N(CH_3)_2与吸电子取代基团氰基乙烯基对化合物电化学行为的影响进行了较为详细的讨论.提出了这些化合物的电氧化态和电还原态的结构,通过分析比较叔、仲和伯自由基对化合物电化学行为的影响,探讨了电极反应机理.     

Tailoring approach for exploring electron densities and electrostatic potentials of molecular crystals

Experimental and theoretical studies of electron densities and the corresponding derived entities such as electrostatic potentials have been the primary means of understanding the chemical nature and electronic properties of crystalline substances. Conventional crystal calculation methods such as the embedded cluster models are capable of performing calculations on small and medium-sized molecules, while periodic ab initio methods can treat crystals with up to 200 atoms per unit cell. A linear scaling method, viz. the molecular tailoring approach, has recently been developed for obtaining ab initio quality one-electron properties. In the present study, the molecular tailoring approach is employed to generate electron density, electrostatic potential and interaction density maps with the ibuprofen crystal as a test case. The interaction density and electrostatic potential maps produced in the present work succinctly bring out the actual crystalline environment around a given reference molecule by including the interactions with atoms in its neighborhood. The results obtained from the molecular tailoring approach may thus be expected to enhance our understanding of the environment in the crystalline material with reasonably small computational effort.Contribution to the Jacopo Tomasi Honorary Issue