Structural Relationships between the Hemiporphyrazine Macrocyclic Ligand and its Metal Complexes. II.: Planar Neutral Ligand,C26H16N8, and Four Isomorphous Metal Complexes, [M(C26H16N8)(H2O)], M=Mn(II), Co(II), Cu(II), Zn(II)

Crystal and molecular structures of the planar neutral ligand, C₂₆H₁₆N₈, and the four isomorphous five-coordinated metal complexes, [M(C₂₆H₁₆N₈)(H₂O)], M = Mn(II), Co(II), Cu(II), Zn(II), have been determined from three-dimensional X-ray diffraction data. The free ligand hpH₂, C₂₆H₁₆N₈, belongs to the P 2₁/c space group with Z=2, a=4.142(3), b=23.736(6), c=10.338(3) Ä, β=94.66(6)°. The metal complexes monohydrate Mhp-H₂O all belong to the orthorhombic Pcab space group with Z=8. The dimensions are roughly 8.8×19.3×23.7 ų. In each structure, the macrocyclic ligand has an almost planar conformation which differs from the saddle shaped ligand hydrate (hpH₂·H₂O) and the nickel complex [Nihp]⁵. The distances from the center of the macrocyclic ring to the nitrogen atom of the free ligand are 1.907(6) and 2.245(6)Å. The coordination geometry in these four complexes is square pyramidal with a water molecule as an axial ligand. The bond distances of M(II)-O(H₂O), M(II)-N1 (imine), M(II)-N3 (pyridine) are: 2.19(1), 2.00(2), 2.27(2)Å respectively for the manganese complex; 2.08(1), 1.97(1), 2.23(1)Å for the cobalt complex; 2.33(1), 1.92(3), 2.18(1)Å for the copper complex; 2.110(5), 1.964(6), 2.252(6)Å for the zinc complex. The variation of metal-ligand distances can be correlated to the metal d orbital occupancy. A comparison with similar ligands will be presented.     

Surface Functionalized Magnetic Nanoparticles as a Selective Sorbent for Affinity Fishing of PPAR-γ Ligands from Choerospondias axillaris

Coronary heart disease (CHD), which has developed into one of the major diseases, was reported to be treated by the target of peroxisome proliferators-activate receptor γ (PPAR-γ). As a natural medicine long used in the treatment of CHD, there are few studies on how to screen the target active compounds with high specific activity from Choerospondias axillaris. To advance the pace of research on target-specific active compounds in natural medicines, we have combined magnetic ligand fishing and functionalized nano-microspheres to investigate the active ingredients of PPAR-γ targets in Choerospondias axillaris. The PPAR-γ functionalized magnetic nano-microspheres have been successfully synthesized and characterized by vibrating sample magnetometer (VSM), scanning electron microscopy (SEM), and transmission electron microscopy (TEM). The specificity, reusability, and reproducibility of the nano-microspheres were investigated with the help of the specific binding of rosiglitazone to PPAR-γ. In addition, the incubation temperature and the pH of the buffer solution in the magnetic ligand fishing were optimized to improve the specific adsorption efficiency of the analytes. Finally, with the aid of ultraperformance liquid chromatography plus Q-Exactive Orbitrap tandem mass spectrometry (UHPLC-Q-Exactive Orbitrap-MS/MS), the 16 active ligands including 9 organic acids, 5 flavonoids, and 2 phenols were found in the ethanolic extracts of Choerospondias axillaris. Therefore, the study can provide a successful precedent for realizing the designated extraction and rapid isolation of target-specific active ingredient groups in the complex mixtures.     

Mixed-Valent Trinuclear CoIII-CoII-CoIII Complex with 1,3-Bis(5-chlorosalicylideneamino)-2-propanol

A mixed-valent trinuclear complex with 1,3-bis(5-chlorosalicylideneamino)-2-propanol (H₃clsalpr) was synthesized, and the crystal structure was determined by the single-crystal X-ray diffraction method at 90 K. The molecule is a trinuclear Co^III-Co^II-Co^III complex with octahedral geometries, having a tetradentate chelate of the Schiff-base ligand, bridging acetate, monodentate acetate coordination to each terminal Co³⁺ ion and four bridging phenoxido-oxygen of two Schiff-base ligands, and two bridging acetate-oxygen atoms for the central Co²⁺ ion. The electronic spectral feature is consistent with the mixed valent Co^III-Co^II-Co^III. Variable-temperature magnetic susceptibility data could be analyzed by consideration of the axial distortion of the central Co²⁺ ion with the parameters Δ = –254 cm⁻¹, λ = –58 cm⁻¹, κ = 0.93, tip = 0.00436 cm³ mol⁻¹, θ = –0.469 K, g_z = 6.90, and g_x = 2.64, in accordance with a large anisotropy. The cyclic voltammogram showed an irreversible reduction wave at approximately −1.2 V·vs. Fc/Fc⁺, assignable to the reduction of the terminal Co³⁺ ions.     

Cations Modulated Assembly of Triol-Ligand Modified Cu-Centered Anderson-Evans Polyanions

Counter-cations are essential components of polyoxometalates (POMs), which have a distinct influence on the solubility, stabilization, self-assembly, and functionality of POMs. To investigate the roles of cations in the packing of POMs, as a systematic investigation, herein, a series of triol-ligand covalently modified Cu-centered Anderson-Evans POMs with different counter ions were prepared in an aqueous solution and characterized by various techniques including single-crystal X-ray diffraction. Using the strategy of controlling Mo sources, in the presence of triol ligand, NH₄⁺, Cu²⁺ and Na⁺ were introduced successfully into POMs. When (NH₄)₆Mo₇O₂₄ was selected, the counter cations of the produced POMs were ammonium ions, which resulted in the existence of clusters in the discrete state. Additionally, with the modulation of the pH of the solutions, the modified sites of triol ligands on the cluster can be controlled to form δ- or χ-isomers. By applying MoO₃ in the same reaction, Cu²⁺ ions served as linkers to connect triol-ligand modified polyanions into chains. When Na₄Mo₈O₂₆ was employed as the Mo source to react with triol ligands in the presence of CuCl₂, two 2-D networks were obtained with {Na₄(H₂O)₁₄} or {{Na₂(H₂O)₄} sub-clusters as linkers, where the building blocks were δ/δ- and χ/χ-isomers, respectively. The present investigation reveals that the charges, sizes and coordination manners of the counter cations have an obvious influence on the assembled structure of polyanions.     

Identification of Mtb GlmU Uridyltransferase Domain Inhibitors by Ligand-Based and Structure-Based Drug Design Approaches

Targeting enzymes that play a role in the biosynthesis of the bacterial cell wall has long been a strategy for antibacterial discovery. In particular, the cell wall of Mycobacterium tuberculosis (Mtb) is a complex of three layers, one of which is Peptidoglycan, an essential component providing rigidity and strength. UDP-GlcNAc, a precursor for the synthesis of peptidoglycan, is formed by GlmU, a bi-functional enzyme. Inhibiting GlmU Uridyltransferase activity has been proven to be an effective anti-bacterial, but its similarity with human enzymes has been a deterrent to drug development. To develop Mtb selective hits, the Mtb GlmU substrate binding pocket was compared with structurally similar human enzymes to identify selectivity determining factors. Substrate binding pockets and conformational changes upon substrate binding were analyzed and MD simulations with substrates were performed to quantify crucial interactions to develop critical pharmacophore features. Thereafter, two strategies were applied to propose potent and selective bacterial GlmU Uridyltransferase domain inhibitors: (i) optimization of existing inhibitors, and (ii) identification by virtual screening. The binding modes of hits identified from virtual screening and ligand growing approaches were evaluated further for their ability to retain stable contacts within the pocket during 20 ns MD simulations. Hits that are predicted to be more potent than existing inhibitors and selective against human homologues could be of great interest for rejuvenating drug discovery efforts towards targeting the Mtb cell wall for antibacterial discovery.     

Radiation chemistry of tris(acetylacetonato) cobalt(iii) in aqueous solutions

Abstract

On radiolysis tris(acetylacetonato) cobalt(III) in aqueous solutions is found to get reduced by reaction with (1) hydrated electrons, (2) H atoms, (3) OH radicals and (4) C₂H₂OH radicals. The bimolecular rate constants for the first three reactions, determined by competition kinetics are: 4 × 10¹⁰, 2.3 × 10⁹ and 4.7 × 10⁹ M^?1sec^?1 respectively. Absorption spectra of the irradiated solutions indicate the formation of bis(acetylacetonato) cobalt(II) from reaction (1), but not from (3). The total cobaltous yield in air-free solutions is given byG(Co⁺⁺) = 5.6 and 6.5 at pH 6.5 and 1 respectively. It appears that G_eaq- ∽ _H ⁺ G_oH ∽ 2.8 in neutral solutions. Considerations of material balance for the primary yields of radiolysis of water suggest the possibility that the so-called independent H-atoms in neutral solutions are probably excited water molecules or ion-pairs.     

DIE AMBIDENTE REAKTIONSFÄHIGKEIT DES RHODANIDANIONS IN DER REAKTION MIT 2-PROPOXYCARBONYLTHIOCYANAT

Abstract

By pursuing the reaction between 2-propyloxycarbonylthiocyanate and ¹⁴C-potassiumrhodanide the relative reactivity of the nitrogen and sulfur in the rhodanideanion has been determined.

Durch Verfolgen der Reaktion zwischen 2-Propoxycarbonylthiocyanat und ¹⁴C markiertem Kaliumrh odanid wurde die relative Reaktionsfähigkeit des Rhodanidanions in bezug auf das Stickstoffatom und das Schwefelatom bestimmt.     

Selective lighting up of segments around Gly,Ala and Ser/Thr in proteins

Direct detection of ¹³C nucleus can be used as a valuable alternative where ¹H detection poses a challenge due to relaxation effects, chemical exchange and poor chemical shift dispersion. In this context, we have designed a suite of 2D ¹³C^α‐detected hNCA experiments that provide sequential correlations of ¹³C^α with ¹⁵N on one hand and efficient spectroscopic labeling of certain groups of residues, namely, Gly, Ala, Ser and Thr, on the other. These residues act as checkpoints in the sequential walk, which in turn offer new possibilities of backbone assignment of small proteins from a set of 2D experiments, thereby providing great economy in terms of spectrometer time. The direct identification of peptide segments around Gly, Ala, Ser and Thr residues along a protein chain will be highly valuable for deriving important information on sites of ligand binding, phosphorylation, inhibitor/substrate binding, understanding protein folding pathways, comprehending local conformational dynamics etc. without having to obtain complete sequence‐specific assignments, which can be time consuming and at times formidable, especially in large proteins. We have illustratively demonstrated the multifaceted applications of these variants of 2D experiments on ubiquitin and M‐crystallin. We foresee that these 2D hNCA experiments will provide economic and efficient strategies for studying the structure and function of proteins. Copyright © 2012 John Wiley & Sons, Ltd.     

Synthesis and characterization of polystyrene-anchored monobasic bidentate Schiff base and its complexes with bi-, tri-, tetra- and hexavalent metal ions

A new monobasic bidentate ON donor Schiff base PS–LH₂ (where PS–LH₂ = polystyrene-anchored Schiff base obtained by condensation of chloromethylated polystyrene (containing 1.17 mmol of chlorine per gram of resin cross-linked with 2% divinylbenzene), 2-hydroxy-1-naphaldehyde and 4-aminosalicylic acid has been synthesized. PS–LH₂ reacts with metal complexes to form polystyrene-anchored complexes: PS–LHM(CH₃Coo) · DMF (where M = Cu, Zn, Cd, UO₂), PS–LHZr(OH)₂(CH₃Coo) · 2DMF, PS–LHFeCl₂ · 2DMF, PS–LHM′(CH₃Coo) · 3DMF (where M′ = Mn and Ni) and PS–LHMoo₂(acac), where acacH = acetylacetone. The polystyrene-anchored complexes have been characterized by elemental analysis, IR, ESR and magnetic susceptibility measurements. The per cent reaction conversion of PS–LH₂ to polystyrene supported coordination compounds lies between 30–95. Shifts of the azomethine ν(C=N) and phenolic ν(C–O) stretches are indicative of ON donor behaviour of the polystyrene-anchored ligands. The complexes, PS–LHCu(CH₃Coo) · DMF, PS–LHFecl₂ · 2DMF, PS–LHMn(CH₃Coo) · 3DMF and PS–LHNi(CH₃Coo) · 3DMF are paramagnetic, while PS–LHZn(CH₃Coo) · DMF, PS–LHCd(CH₃COO) · DMF, PS–LHUo₂(CH₃Coo) · DMF, PS–LHZr(OH)₂(CH₃COO) · 2DMF and PS–LHMoO₂(acac) are diamagnetic. The copper(II) complex exhibits a square planar structure, zinc(II) and cadmium(II) complexes have tetrahedral structures, nickel(II), manganese(II), iron(III), dioxomolybdenum(VI) and dioxouranium(VI) complexes have octahedral structure and zirconium(IV) complex is pentagonal bipyramidal.     

An unprecedented tetranuclear Zn(ΙΙ) complex with an unsymmetric Salen-type bisoxime ligand: synthesis,crystal structure,and spectral properties

A tetranuclear Zn(ΙΙ) complex, [Zn₄L₂(OAc)₂(CH₃OH)₂] with an unsymmetric Salen-type bisoxime (H₃L?=?6-hydroxy-4′,6′-dibromo-2,2′-[ethylenediyldioxybis(nitrilomethylidyne)]diphenol), has been synthesized and structurally characterized. There are two kinds of coordination geometry (trigonal bipyramidal and square pyramidal) in the Zn(ΙΙ) complex. The molecule has serious distortion probably from the asymmetry. The complex exhibits blue emission with the maximum emission wavelength λ _max?=?423?nm when excited with 340?nm.