白藜芦醇顺反异构体及第一三重激发态结构的理论研究

在B3LYP/6-311++G(d,p)水平对白藜芦醇顺反异构体及第一三重激发态进行了结构优化、频率计算和自然键轨道(Natural Bond Orbital,NBO)分析.在MP2/6-311++G(d,p)//B3LYP/6-311++G(d,p)水平比较了白藜芦醇顺反异构体的能量.反式白藜芦醇整个分子呈平面结构,顺式白藜芦醇两苯环之间存在约30o扭角.第一三重激发态中两苯环几乎处于互相垂直的关系,C7-H5与C8-H6键也是几乎互相垂直的关系.顺式和反式白藜芦醇C7-C8的σ键成键情况分别为sp1.53-sp1.53和sp1.59-sp1.60,C7与C8各自提供p轨道形成π键,即形成C7=C8双键.三重态中,C7-C8的成键情况为sp1.92-sp1.89,没有p-pπ键,C7、C8均还有一个2p轨道未参与杂化,NBO分析证实C7、C8的各自剩下的2p轨道均几乎独立形成了高能量的反键轨道,分别垂直于单羟基和双羟基苯环,C7-C8键长明显长于白藜芦醇顺反异构体.顺式白藜芦醇比反式白藜芦醇的自由能高约1.3-2.5 kcal/mol,反式构型是热力学稳定构型.含时密度泛函方法(Time-Dependent Density Functional Theory,TD-DFT)方法,B3LYP/6-311++G(d,p)水平计算得反式和顺式白藜芦醇最强紫外吸收峰分别在330 nm和319 nm.     

Stability and structure of mixed-ligand metal ion complexes that contain Ni2+, Cu2+, or Zn2+, and Histamine, as well as adenosine 5'-triphosphate (ATP4-) or uridine 5'-triphosphate (UTP(4-): an intricate network of equilibria

With a view on protein–nucleic acid interactions in the presence of metal ions we studied the “simple” mixed‐ligand model systems containing histamine (Ha), the metal ions Ni²⁺, Cu²⁺, or Zn²⁺ (M²⁺), and the nucleotides adenosine 5′‐triphosphate (ATP^4?) or uridine 5′‐triphosphate (UTP^4?), which will both be referred to as nucleoside 5′‐triphosphate (NTP^4?) . The stability constants of the ternary M(NTP)(Ha)^2? complexes were determined in aqueous solution by potentiometric pH titrations. We show for both ternary‐complex types, M(ATP)(Ha)^2? and M(UTP)(Ha)^2?, that intramolecular stacking between the nucleobase and the imidazole residue occurs and that the stacking intensity is approximately the same for a given M²⁺ in both types of complexes: The formation degree of the intramolecular stacks is estimated to be 20 to 50 %. Consequently, in protein–nucleic acid interactions imidazole–nucleobase stacks may well be of relevance. Furthermore, the well‐known formation of macrochelates in binary M²⁺ complexes of purine nucleotides, that is, the phosphate‐coordinated M²⁺ interacts with N7, is confirmed for the M(ATP)^2? complexes. It is concluded that upon formation of the mixed‐ligand complexes the M²⁺? N7 bond is broken and the energy needed for this process corresponds to the stability differences determined for the M(UTP)(Ha)^2? and M(ATP)(Ha)^2? complexes. It is, therefore, possible to calculate from these stability differences of the ternary complexes the formation degrees of the binary macrochelates: The closed forms amount to (65±10) %, (75±8) %, and (31±14) % for Ni(ATP)^2?, Cu(ATP)^2?, and Zn(ATP)^2?, respectively, and these percentages agree excellently with previous results obtained by different methods, confirming thus the internal validity of the data and the arguments used in the evaluation processes. Based on the overall results it is suggested that M(ATP)^2? species, when bound to an enzyme, may exist in a closed macrochelated form only, if no enzyme groups coordinate directly to the metal ion.     

“Crowned” Univalent Indium Complexes as Donors? Experimental and Computational Insights on the Valence Isomers of EE′X4 Species

The use of the univalent indium reagent [In([18]crown-6)][OTf] as a donor is investigated by its reactions with acceptors including InX(3) (X=Cl, Br, I). The donor-acceptor complexes of the form [X([18]crown-6)In-InX(3)] obtained in this manner represent the first new isomeric form of indium(II) halides identified for at least five decades. The formation of such complexes appears to be particularly favorable and they are isolated as products in many reactions involving low-valent indium, a halide source, and [18]crown-6. A convenient solution-phase synthesis of In[ECl(4)] salts is reported. This facile and direct syntheses of In[ECl(4)] (E=Al, Ga, In) salts allows for the in situ preparation and isolation of crown-ether complexes of the form [In([18]crown-6)][ECl(4)], whose existence had been postulated but never confirmed. Solution-phase and solid-state NMR experiments reveal that these compounds can exist as either donor-acceptor complexes or ionic salts, depending on the phase of the system, the nature of the solvent employed, and the identity of the metalate anion involved. Similar investigations into the effect of a smaller crown ether allow for the isolations of salts containing the cation [In([15]crown-5)](+). Computational investigations into the nature of the crowned univalent indium donor fragments, and on the donor-acceptor complexes produced, demonstrate the influence of anionic substituents on the reactivity of lone pair of electrons of the In(I) center. Natural bond orbital (NBO) analysis of donor-acceptor models shows that the composition of the E-E bond MO should provide the ability to predict which models should form stable complexes.     

Gas chromatographic identification of chlorination products of aliphatic ketones

Chlorinated derivatives of aliphatic ketones are a class of organic compounds poorly characterized by both mass spectra and chromatographic retention indices up to present. It is caused by objective difficulties of isolation of individual products from reaction mixtures formed in the result of non-selective chlorination of parent carbonyl compounds. Nevertheless the differences of GC retention indices for structurally analogous chlorination products of different ketones and initial substrates indicate the constancy depending on the number and position of chlorine atoms in the molecules. This feature permits us to use the simplest kind of additive schemes in identification of such chlorinated derivatives, including diastereomeric α,α'-dichloro-k-alkanones (k>2). Hence, the identification of chlorination products of aliphatic ketones becomes possible for any compounds of this class without using mass spectrometric data only in the result of accurate measurement of their GC retention indices.     

Absorption spectra of azobenzenes simulated with time‐dependent density functional theory

Using time‐dependent density functional theory and the polarizable continuum model, we have simulated the absorption spectra of an extended series of azobenzene dyes. First, we have determined a theoretical level optimal for this important class of dyes, and it turned out that a C‐PCM‐CAM‐B3LYP/6‐311+G(d,p)//C‐PCM‐B3LYP/6‐311G(d,p) approach represents an effective compromise between chemical accuracy and computational cost. In a second stage, we have compared the theoretical and experimental transition energies for 46 n → π^☆ and 141 π → π^☆ excitations. For the full set, that spans over a 302–565 nm domain, we obtained a mean absolute deviation of 13 nm (0.10 eV) and a linear correlation coefficient of 0.95, illustrating the accuracy of our approach, though some significant outliers pertained. In a last step, the impact of several modifications, that is, trans/cis isomerization, variation of the acidity of the medium and azo/hydrazo tautomerism have been modeled with two functionals. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2010     

Application of molecular statistical calculations to the prediction of chromatographic separation of isomeric difluorobiphenyls

Molecular statistical calculations have been used for estimation of the possibility of chromatographic separation of difluorobiphenyl mixtures. GC-MS investigation of the mixture of difluorobiphenyls has been carried out. It is impossible to identify each isomer with only mass spectrometric data due to the similarity of their mass spectra. A chromato graphic column that makes adequate chromatographic separation possible has been selected based on the molecular statistical calculations. The identification of each isomer resulted from combination of the mass spectrometric investigation results and molecular statistical calculations.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 3, pp. 623–626, March, 1996.     

Predictive abilities of scaled quantum mechanical molecular force fields: application to 2,3-dimethylbuta-1,3-diene

In connection with the appearance of new experimental vibrational data on the high-energy rotational isomer of 2,3-dimethylbuta-1,3-diene (I) in a low-temperature matrix and in neat crystals, the ab initio-based vibrational analysis of this molecule has been re-evaluated. Calculated wavenumbers derived from a scaled quantum-mechanical force field analysis at the MP2(FC)/aug-cc-pVDZ//MP2(FC)/aug-cc-pVDZ computational level are compared with experimental data. Several reassignments of the fundamental wavenumbers for I have been suggested in the course of the current analysis, and the existence of a high-energy non-planar s-gauche conformer of 2,3-dimethylbuta-1,3-diene has been confirmed.     

Determination of toluenesulfonic acid isomers by gas chromatography

Summary A gas chromatographic method for the determination of isomeric distribution in toluenesulfonic acid samples is described. The acids are transformed into the corresponding ethyl esters by reaction with triethyl orthoformate in toluene. The reaction mixture can be injected, without further purification, into the gas chromatograph. The separation is best performed on columns containing OV-210 or polyphenyl ether (6 rings) as the stationary phase.     

The transport properties of polyimide isomers containing hexafluoroisopropylidene in the diamine residue

The effect of modification of the central moiety of the dianhydride residue and isomerism on the gas transport and physical properties were compared for six polyimides containing the hexafluoroisopropylidene group in the diamine residue. Substitution of bulkier groups within the dianhydride residue resulted in disruption of chain packing and slight increases in resistance to chain motions which led to an increase in permeability with little loss in selectivity. The permeabilities and diffusivities in the meta connected polyimide isomers were considerably lower than in the para connected polyimide isomers. Similarly, the permselectivities in the meta connected isomers were consistently higher than in the para connected isomers. These lower permeabilities and higher permselectivities were a result of the more dense packing and a significant suppression of small scale motions in the meta connected isomers. The suppression of segmental mobility in the meta connected isomers was indicated by an increase in the sub Tg transition temperatures in these materials relative to the para connected isomers. The differences in transport properties for these polyimides were attributed to contributions by several factors, including: (1) total free volume (2) distribution of free volume (3) intersegmental resistance to chain motions, and (4) intrasegmental resistance to chain motions. © 1994 John Wiley & Sons, Inc.