非晶态金属Al中微团簇多面体结构及其演变规律的模拟研究

对50 000个金属Al原子从液态急冷形成非晶态结构的过程进行了分子动力学模拟研究.采用原子键型和原子团簇类型指数法,发现在其微观结构的转变过程中,与不断增加的1551键型密切相关的二十面体及其缺陷结构的形成起了非常突出的作用.通过各种键型原子团簇的计算,获得团簇多面体结构的分布数据.在可视化的显示下,得到一幅十分清晰的关于团簇多面体结构的特征及其演变的图景.建立了一种简单而有效的团簇多面体结构研究方法.同时也对模拟计算结果的微观机理给出了相应的讨论,这对于深入理解非晶态结构的形成机制及其微观过程,将有重     

基态和激发态氧振动光谱的量子力学计算

利用分子势能函数的Murrell-Sorbie和PG函数形式,将时域有限差分法应用基态和激发态氧分子的振动能级的量子力学计算,计算结果令人满意.     

Conformational Analysis of (S)-4,5,6,7-Tetrahydro-5-Methylimidazo [4,5,1-jk][1,4]-Benzodiazepin-2(1H)-one (R78362)

The solution and solid state conformation of (S)-4,5,6,7-tetrahydro-5-methylimidazo [4,5,1-jk][1,4]-benzodiazepin-2(1H)-one (R78362) have been investigated by low temperature NMR and x-ray diffraction studies. The ¹H NMR spectrum of R78362 shows no evidence of the presence of multiple conformers in the temperature range 340K - 177K. Molecular mechanisms and semiempirical molecular orbital calculations suggest that the nitrogen and ring inversion barriers of R78362 are small and thus a time-averaged ¹H NMR spectrum is probably occurring at 298K. The x-ray diffraction data indicated that there were two independent molecules in the asymmetric unit of the crystal. The two molecules had similar conformations with the benzoimidazole ring being planar and the diazepine ring in a “half-chair” conformation.     

CN红带A^2Πi-X^2Σ^＋（6，1）和（7，2）带振转光谱研究

通过微量CH3CN(36Pa)与He(660Pa)混合气体交流Penning辉光放电获得CN自由基分子，采用光外差-磁旋转-浓度调制光谱技术，在可见光波段16850～17480cm^-1进行了转动分辨光谱测量，分别标识了CN分子红带A^2Πi-X^2Σ^ (6，1)和(7，2)138条和118条的转动光谱(其余光谱为C2自由基及CN红带(8，3)带光谱)。理论拟合分子常数时考虑电子态间的微扰作用，采用有效哈密顿量矩阵对角化获得了A^2Πi(v=6，7)态更精确的分子常数及电子态A^2Πi(v=7)与X^2Σ^ (v=11)之间的微扰常数ξ，η，总体拟合方差均小于实验误差0．007cm^-1，表明拟合结果是非常精确的。     

α,α'-二氧代烯酮环二硫代缩醛的NMR研究

报道了7种新的α,α'-二氧代烯酮环二硫代缩醛化合物的NMR谱.应用¹H、¹³C NMR谱等确定了这7种新化合物的分子结构,并对全部谱峰进行了归属,初步探讨了分子结构对化学位移的影响.     

Dynamics of polyglutamic acids in α-helical and coil states. Comparison with dynamics of some globular proteins. Rayleigh scattering of Mössbauer radiation (RSMR) data

Summary The classical model system poly-L-glutamic acid (poly-Glu), was investigated in a disordered coil state (atpH=7.0) and in helix state (atpH=2.0) by the RSMR technique. By considering that the coil state of poly-Glu models unfolded (random coil) state and α-helix state models the fluctuating secondary structure (during consequent folding of protein), a comparative analysis of the dynamical properties of poly-Glu in different states with the dynamical properties of different proteins in the native state (α-helical myoglobin and HSA, partially β-sheet lysozyme) and in intermediate (molten globule) state (α-lactalbumin) was performed. This comparison brings some unpredicted results: native α-helical proteins behave close to random coil, native partially β-sheet proteins behave close to fluctuating secondary structure (α-helix) and the dynamic behaviour of molten-globule state (partially β-sheet α-lactalbumin) is not different from the behaviour of lysozyme and much more rigid than that of native α-helical proteins. Paper presented at ICAME-95, Rimini, 10–16 September 1995.     

Adatom concentration on GaAs(001) during MBE annealing

We study the concentration of adatoms on GaAs(001) during annealing under MBE conditions. By rapidly cooling the sample from typical growth temperatures and typical As overpressures, the thermal concentration of adatoms can be frozen into small islands on the terraces. The area of the resulting islands is measured with STM far from terrace steps, giving an estimate of the concentration of adatoms during equilibrium. We find that a surprisingly large concentration of adatoms is present for typical growth temperatures, e.g. 0.18 monolayer at 600°C. Possible consequences for current growth models are discussed.     

Palladium island growth on Ni(111) Stochastic classical trajectory — ghost atom calculations

We generalize previous stochastic classical trajectory-ghost atom calculations for describing palladium deposition onto the Ni(111) surface between 0.1 and 0.5 monolayers. The growth evolves through two-dimensional islands. The islands are formed following the downward funneling mechanism. Surface temperature does not affect the island growth.     

分子动力学研究抑制剂pDI6W与MDM2的相互作用机制

p53-MDM2相互作用已经成为治疗癌症药物设计的重要靶标.本文采用分子动力学模拟和MM-PBSA(molecular mechanics-Possion-Boltzmann surface area)方法计算了肽类抑制剂pD16W与MDM2的结合自由能,结果证明范德华作用是pD16W与MDM2结合的主要力量.相关矩阵的计算结果表明pD16W的结合主要诱导了MDM2内部的反相关运动.基于成对残基的自由能分解计算不仅证明pD16W的5个残基Phe19′,Trp22′,Trp23′,Leu26′和Thr27′能够与MDM2产生较强的相互作用,而且确认了CH-π,CH-CH和π-πc相互作用驱动了pD16W在MDM2疏水裂缝中的结合.这为抗癌药物的设计提供了理论上的指导.     

分子信标的原理、应用及其研究进展

分子信标是一种设计巧妙的新型荧光标记核酸探针。特殊的发夹结构使分子信标具有很强的特异性识别靶标序列的能力 ,目前已成为分子生物学和生物技术中一种强有力的研究工具。本文介绍了分子信标的原理及其在 PCR、核酸序列的分析、活细胞内核酸的动态检测、蛋白质 (酶 )与核酸的相互作用等方面的应用和研究进展。